IslandPathversion 1.0

IslandPath Analysis: Enterococcus faecalis V583



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 37.28 STD DEV: 4.35
Enterococcus faecalis V583, complete genome - 1..3218031
3113 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1013	 33.99	0	1067396..1067701	-	101	29375674	-	EF1098	-	hypothetical protein
1014	 38.42	0	1068036..1070060	+	674	29375675	-	EF1099	-	collagen adhesin protein
1015	 32.27	-1	1070185..1071780	+	531	29375676	-	EF1100	-	ABC transporter, ATP-binding/permease protein
1016	 37.41	0	1071850..1072584	+	244	29375677	-	EF1101	-	hypothetical protein
1017	 33.58	0	1072581..1072982	-	133	29375678	-	EF1102	-	hypothetical protein
1018	 37.18	0	1073093..1074445	-	450	29375679	-	EF1103	-	amino acid permease family protein
1019	 29.03	-1	1074617..1074802	-	61	29375680	-	EF1104	-	hypothetical protein
1020	 34.64	0	1075288..1075593	-	101	29375681	-	EF1105	-	hypothetical protein
1021	 31.01	-1	1075596..1075724	+	42	29375682	-	EF1106	-	hypothetical protein
1022	 41.67	+1	1075884..1076039	+	51	29375683	-	EF1107	-	hypothetical protein
1023	 40.94	0	1075945..1076706	+	253	29375684	-	EF1108	-	oxidoreductase, putative
1024	 41.07	0	1076719..1078191	+	490	29375685	-	EF1109	-	iron-sulfur cluster binding protein
1025	 40.83	0	1078184..1078903	+	239	29375686	-	EF1110	-	YkgG family protein
1026	 35.15	0	1079124..1079672	+	182	29375687	-	EF1111	-	signal peptidase I
1027	 38.85	0	1079783..1083373	+	1196	29375688	rexB	EF1112	-	exonuclease RexB
1028	 38.52	0	1083366..1087160	+	1264	29375689	rexA	EF1113	-	exonuclease RexA
1029	 34.78	0	1087230..1087574	+	114	29375690	-	EF1114	-	hypothetical protein
1030	 38.87	0	1087895..1088941	+	348	29375691	pheS	EF1115	-	phenylalanyl-tRNA synthetase subunit alpha
1031	 38.61	0	1088949..1091372	+	807	29375692	pheT	EF1116	-	phenylalanyl-tRNA synthetase subunit beta
1032	 36.34	0	1091568..1092233	-	221	29375693	-	EF1117	-	amino acid ABC transporter, permease protein
1033	 40.20	0	1092245..1092958	-	237	29375694	-	EF1118	-	amino acid ABC transporter, permease protein
1034	 35.75	0	1093004..1093831	-	275	29375695	-	EF1119	-	amino acid ABC transporter, amino acid-binding protein
1035	 39.34	0	1093866..1094597	-	243	29375696	-	EF1120	-	amino acid ABC transporter, ATP-binding protein
1036	 40.15	0	1094868..1095689	+	273	29375697	murI	EF1121	-	glutamate racemase
1037	 42.18	+1	1095682..1097037	+	451	29375698	rph	EF1122	-	ribonuclease PH/Ham1 protein
1038	 39.38	0	1097050..1097562	+	170	29375699	-	EF1123	-	hypothetical protein
1039	 35.56	0	1097656..1098420	-	254	29375700	-	EF1124	-	DeoR family transcriptional regulator
1040	 36.99	0	1098614..1099681	+	355	29375701	-	EF1125	-	putative L-ascorbate 6-phosphate lactonase
1041	 39.22	0	1099699..1100157	+	152	29375702	-	EF1126	-	PTS system, IIA component
1042	 37.10	0	1100170..1101657	+	495	29375703	ulaA	EF1127	-	ascorbate-specific PTS system enzyme IIC
1043	 36.00	0	1101672..1101971	+	99	29375704	sgaB	EF1128	-	phosphotransferase enzyme II, B compnent SgaB
1044	 39.59	0	1101985..1102623	+	212	29375705	ulaD	EF1129	-	3-keto-L-gulonate-6-phosphate decarboxylase
1045	 37.98	0	1102628..1103488	+	286	29375706	-	EF1130	-	putative L-xylulose 5-phosphate 3-epimerase
1046	 40.08	0	1103478..1104188	+	236	29375707	araD	EF1131	-	L-ribulose-5-phosphate 4-epimerase
1047	 34.97	0	1104445..1104933	+	162	29375708	-	EF1132	-	CBS domain-containing protein
1048	 42.59	+1	1105014..1105715	+	233	29375709	dapD	EF1133	-	2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase
1049	 41.20	0	1105752..1106921	+	389	29375710	-	EF1134	-	M20/M25/M40 family peptidase
1050	 36.26	0	1106966..1107886	-	306	29375711	-	EF1135	-	hypothetical protein
1051	 35.37	0	1108026..1108172	-	48	29375712	-	EF1136	-	hypothetical protein
1052	 38.41	0	1108144..1108419	+	91	29375713	-	EF1137	-	hypothetical protein
1053	 36.48	0	1108496..1109320	+	274	29375714	-	EF1138	-	aldo/keto reductase family oxidoreductase
1054	 41.49	0	1109371..1110093	-	240	29375715	-	EF1139	-	glutamine amidotransferase, class I
1055	 36.27	0	1110236..1110610	-	124	29375716	gloA	EF1140	-	lactoylglutathione lyase
1056	 40.72	0	1110759..1111205	+	148	29375717	-	EF1141	-	MutT/nudix family protein
1057	 36.90	0	1111269..1112081	-	270	29375718	-	EF1142	-	HAD superfamily hydrolase
1058	 38.95	0	1112100..1113470	-	456	29375719	-	EF1143	-	HD domain-containing protein
1059	 40.02	0	1113467..1114318	-	283	29375720	-	EF1144	-	lipoate-protein ligase A family protein, putative
1060	 35.16	0	1114614..1115051	+	145	29375721	-	EF1145	-	hypothetical protein
1061	 35.73	0	1115119..1115745	+	208	29375722	-	EF1146	-	DNA-directed RNA polymerase, delta subunit, putative
1062	 37.00	0	1116053..1117663	+	536	29375723	pyrG	EF1147	-	CTP synthetase
1063	 40.82	0	1117747..1120083	-	778	29375724	-	EF1148	-	penicillin-binding protein 1A
1064	 36.73	0	1120125..1120742	-	205	29375725	recU	EF1149	-	Holliday junction-specific endonuclease
1065	 36.10	0	1120805..1121347	+	180	29375726	-	EF1150	-	hypothetical protein
1066	 35.04	0	1121441..1121851	+	136	29375727	-	EF1151	-	cell division protein DivIVA, putative
1067	 40.72	0	1122565..1123728	+	387	29375728	-	EF1152	-	hypothetical protein
1068	 36.54	0	1123747..1125243	+	498	29375729	-	EF1153	-	thermostable carboxypeptidase 1
1069	 34.73	0	1125276..1125992	+	238	29375730	-	EF1154	-	DNA replication protein DnaD, putative
1070	 40.59	0	1126007..1126654	+	215	29375731	nth	EF1155	-	endonuclease III
1071	 41.05	0	1126828..1127592	+	254	29375732	-	EF1156	-	GntR family transcriptional regulator
1072	 41.11	0	1127589..1128887	+	432	29375733	-	EF1157	-	M20/M25/M40 family peptidase
1073	 42.21	+1	1129087..1130010	+	307	29375734	-	EF1158	-	N4-(beta-N-acetylglucosaminyl)-L-asparaginase, putative
1074	 35.45	0	1130030..1130359	+	109	29375735	-	EF1159	-	PTS system, cellobiose-specific IIB component
1075	 37.32	0	1130378..1131733	+	451	29375736	-	EF1160	-	PTS system, cellobiose-specific IIC component
1076	 40.08	0	1131751..1132269	+	172	29375737	-	EF1161	-	hypothetical protein
1077	 38.41	0	1132387..1134768	+	793	29375738	-	EF1162	-	helicase, putative
1078	 40.58	0	1134765..1135730	+	321	29375739	-	EF1163	-	L-asparaginase, putative
1079	 37.13	0	1135752..1136435	+	227	29375740	-	EF1164	-	HD domain-containing protein
1080	 32.93	-1	1136452..1136946	-	164	29375741	-	EF1165	-	nucleotide-binding protein
1081	 38.14	0	1137181..1138137	+	318	29375742	-	EF1166	-	YitT family protein
1082	 38.97	0	1138340..1139209	+	289	29375743	fba	EF1167	-	fructose-bisphosphate aldolase
1083	 30.77	-1	1139178..1139333	+	51	29375744	-	EF1168	-	hypothetical protein
1084	 40.91	0	1139383..1140675	+	430	29375745	murAB	EF1169	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
1085	 39.60	0	1140672..1141964	+	430	29375746	rho	EF1170	-	transcription termination factor Rho
1086	 40.37	0	1142064..1142333	+	89	29375747	rpmE	EF1171	-	ribosomal protein L31
1087	 31.18	-1	1142650..1143762	+	370	29375748	-	EF1172	-	teichoic acid biosynthesis protein B, putative
1088	 35.34	0	1143752..1144498	+	248	29375749	-	EF1173	-	WecB/TagA/CpsF family glycosyl transferase
1089	 27.95	-2	1144499..1145092	+	197	29375750	-	EF1174	-	hypothetical protein
1090	 31.58	-1	1145158..1145556	+	132	29375751	gct	EF1175	-	glycerol-3-phosphate cytidylyltransferase
1091	 37.46	0	1145695..1146759	+	354	29375752	-	EF1176	-	hypothetical protein
1092	 35.68	0	1146752..1146964	+	70	29375753	-	EF1177	-	hypothetical protein
1093	 40.16	0	1147190..1148068	+	292	29375754	cscK	EF1179	-	fructokinase
1094	 36.95	0	1148159..1148407	+	82	29375755	-	EF1180	-	hypothetical protein
1095	 37.69	0	1148465..1149199	-	244	29375756	-	EF1181	-	nitroreductase family protein
1096	 38.13	0	1149283..1149741	-	152	29375757	luxS	EF1182	-	S-ribosylhomocysteinase
1097	 42.23	+1	1149948..1151015	+	355	29375758	asd	EF1183	-	aspartate-semialdehyde dehydrogenase
1098	 40.89	0	1151049..1151921	+	290	29375759	dapA	EF1184	-	dihydrodipicolinate synthase
1099	 40.14	0	1151952..1153640	+	562	29375760	-	EF1185	-	metallo-beta-lactamase superfamily protein
1100	 40.85	0	1153765..1155147	+	460	29375761	-	EF1186	-	Ser/Thr protein phosphatase family protein
1101	 38.73	0	1155182..1155811	+	209	29375762	-	EF1187	-	hypothetical protein
1102	 38.52	0	1155817..1156587	+	256	29375763	-	EF1188	-	HAD superfamily hydrolase
1103	 32.11	-1	1156575..1157228	+	217	29375764	-	EF1189	-	hypothetical protein
1104	 35.96	0	1157355..1157924	+	189	29375765	-	EF1190	-	hypothetical protein
1105	 38.44	0	1157917..1158777	+	286	29375766	-	EF1191	-	DegV family protein
1106	 39.94	0	1158931..1159596	+	221	29375767	-	EF1192	-	aquaporin Z
1107	 37.87	0	1159770..1160474	+	234	29375768	vicR	EF1193	-	DNA-binding response regulator VicR
1108	 37.43	0	1160481..1162310	+	609	29375769	vicK	EF1194	-	sensory box histidine kinase VicK
1109	 36.31	0	1162307..1163617	+	436	29375770	-	EF1195	-	hypothetical protein
1110	 32.87	-1	1163617..1164471	+	284	29375771	-	EF1196	-	hypothetical protein
1111	 38.79	0	1164528..1165334	+	268	29375772	-	EF1197	-	metallo-beta-lactamase YycJ
1112	 35.85	0	1165545..1166459	+	304	29375773	-	EF1198	-	hypothetical protein
37.28	MEAN

4.35	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.