version 1.0
Colwellia psychrerythraea 34H, complete genome - 1..5373180 4910 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 831 37.30 0 878843..879094 - 83 71281975 rpsQ CPS_0864 - ribosomal protein S17 832 38.54 0 879094..879285 - 63 71278351 rpmC CPS_0865 - ribosomal protein L29 833 43.48 +1 879285..879698 - 137 71280332 rplP CPS_0866 - 50S ribosomal protein L16 834 43.82 +1 879710..880405 - 231 71282222 rpsC CPS_0867 - ribosomal protein S3 835 40.84 0 880418..880750 - 110 71281105 rplV CPS_0868 - ribosomal protein L22 836 43.48 +1 880762..881037 - 91 71281186 rpsS CPS_0869 - 30S ribosomal protein S19 837 45.21 +2 881119..881943 - 274 71279504 rplB CPS_0870 - 50S ribosomal protein L2 838 39.60 0 881956..882258 - 100 71279906 rplW CPS_0871 - 50S ribosomal protein L23 839 42.24 +1 882255..882860 - 201 71278848 rplD CPS_0872 - 50S ribosomal protein L4 840 42.72 +1 882877..883515 - 212 71278595 rplC CPS_0873 - ribosomal protein L3 841 41.67 +1 883530..883841 - 103 71278063 rpsJ CPS_0874 - ribosomal protein S10 842 40.79 0 884821..886926 + 701 71279669 fusA1 CPS_0875 - elongation factor G 843 30.21 -2 887028..887123 + 31 71278825 - CPS_0876 - hypothetical protein 844 33.62 -1 887258..888289 - 343 71281466 - CPS_0877 - hypothetical protein 845 35.27 0 888744..888950 - 68 71281977 - CPS_0878 - hypothetical protein 846 34.81 0 889352..889486 + 44 71280032 - CPS_0879 - hypothetical protein 847 40.56 0 889476..889724 + 82 71278085 - CPS_0880 - hypothetical protein 848 39.18 0 890002..891369 - 455 71281719 - CPS_0881 - zona occludens toxin-like protein 849 32.35 -1 891459..891863 - 134 71282257 - CPS_0882 - hypothetical protein 850 35.10 0 891860..893221 - 453 71278957 - CPS_0883 - hypothetical protein 851 41.67 +1 893342..893569 - 75 71278203 - CPS_0884 - hypothetical protein 852 38.43 0 893585..893839 - 84 71280335 - CPS_0885 - hypothetical protein 853 38.26 0 893846..894190 - 114 71282101 - CPS_0886 - hypothetical protein 854 40.24 0 894216..895649 - 477 71279225 - CPS_0887 - putative phage replication initiation protein 855 37.75 0 895639..895842 - 67 71280960 - CPS_0888 - hypothetical protein 856 37.45 0 895845..896087 - 80 71281183 - CPS_0889 - putative transcriptional regulator 857 28.32 -2 896199..896597 + 132 71280409 - CPS_0890 - hypothetical protein 858 32.72 -1 896560..896721 - 53 71282165 - CPS_0891 - hypothetical protein 859 29.72 -2 896774..897244 + 156 71281502 - CPS_0892 - hypothetical protein 860 33.33 -1 897186..897296 + 36 71280591 - CPS_0893 - hypothetical protein 861 41.33 0 897465..898352 - 295 71281247 - CPS_0894 - ISCps3, transposase orfB 862 40.50 0 898283..898645 - 120 71281950 - CPS_0895 - ISCps3, transposase orfA 863 31.30 -1 898731..899123 - 130 71281435 - CPS_0896 - hypothetical protein 864 34.00 -1 899224..899676 - 150 71281929 - CPS_0897 - hypothetical protein 865 29.96 -2 899673..900353 - 226 71280695 - CPS_0898 - hypothetical protein 866 37.20 0 900319..900525 - 68 71279748 - CPS_0899 - hypothetical protein 867 33.73 -1 901027..902031 + 334 71281181 - CPS_0900 - phage integrase family site specific recombinase 868 38.45 0 902252..903013 - 253 71280640 - CPS_0901 - hypothetical protein 869 39.69 0 903070..903966 + 298 71279477 - CPS_0902 - acetyltransferase 870 40.96 0 903998..904495 + 165 71280186 - CPS_0903 - hypothetical protein 871 40.22 0 904523..905437 + 304 71282099 - CPS_0904 - hypothetical protein 872 32.26 -1 905508..905786 + 92 71280291 - CPS_0905 - hypothetical protein 873 40.73 0 905786..906718 + 310 71278711 - CPS_0906 - NifR3/Smm1 family protein 874 36.51 0 906787..906912 + 41 71281711 - CPS_0907 - hypothetical protein 875 40.32 0 907180..908724 - 514 71278652 hutH CPS_0908 - histidine ammonia-lyase 876 44.07 +1 908887..910581 - 564 71277962 hutU CPS_0909 - urocanate hydratase 877 36.72 0 910721..911458 - 245 71280178 hutC CPS_0910 - histidine utilization repressor 878 41.69 +1 911672..912928 + 418 71279387 hutI CPS_0911 - imidazolonepropionase 879 36.57 0 913485..914195 + 236 71281657 - CPS_0912 - hypothetical protein 880 37.04 0 914221..916569 + 782 71282335 - CPS_0913 - sensory box protein 881 41.77 +1 916584..917852 + 422 71280241 - CPS_0914 - hypothetical protein 882 37.55 0 917908..918618 - 236 71280956 - CPS_0915 - glycerophosphoryl diester phosphodiesterase family protein 883 38.20 0 918971..919915 + 314 71281709 - CPS_0916 - RNA pseudouridine synthase family protein 884 41.67 +1 920056..921951 - 631 71281178 - CPS_0917 - acid-CoA ligase family protein 885 36.07 0 922561..922779 + 72 71279644 - CPS_0918 - DNA-binding protein 886 39.56 0 922838..923383 - 181 71279109 - CPS_0919 - hypothetical protein 887 41.24 0 923476..926307 - 943 71281224 uvrA CPS_0920 - excinuclease ABC, A subunit 888 36.84 0 926684..926797 - 37 71280684 - CPS_0921 - hypothetical protein 889 40.81 0 926822..928186 + 454 71280107 - CPS_0922 - major facilitator family transporter 890 35.19 0 928321..928536 + 71 71279531 - CPS_0923 - hypothetical protein 891 43.42 +1 928567..929052 - 161 71280898 - CPS_0924 - hypothetical protein 892 41.41 0 929218..931260 + 680 71280229 fadH1 CPS_0925 - 2,4-dienoyl-CoA reductase 893 36.79 0 931386..932714 + 442 71277754 pssA CPS_0926 - phosphatidylserine synthase 894 37.11 0 932787..934613 - 608 71282281 - CPS_0927 - hypothetical protein 895 31.78 -1 934637..934894 + 85 71278777 - CPS_0928 - hypothetical protein 896 38.38 0 935056..935451 + 131 71279671 - CPS_0929 - thioesterase family protein 897 43.59 +1 935811..936512 + 233 71277762 ssb CPS_0930 - single-strand binding protein 898 41.28 0 936638..937681 - 347 71279530 - CPS_0931 - oxidoreductase, zinc-binding 899 34.34 -1 937757..937855 + 32 71279954 - CPS_0932 - hypothetical protein 900 40.58 0 937900..938589 - 229 71279077 - CPS_0933 - ThiJ/PfpI family protein 901 40.80 0 938739..939635 + 298 71278365 - CPS_0934 - LysR family transcriptional regulator 902 40.41 0 939721..940752 + 343 71281506 - CPS_0935 - putative polyhydroxyalkanoate depolymerase 903 37.59 0 940893..943145 + 750 71282170 - CPS_0936 - TonB-dependent receptor 904 39.58 0 943259..943930 + 223 71279165 - CPS_0937 - LuxR family DNA-binding response regulator 905 39.13 0 944052..945017 - 321 71278160 - CPS_0938 - putative lipoprotein 906 40.52 0 945172..948678 - 1168 71279574 - CPS_0939 - sensory box sensor histidine kinase/response regulator 907 37.09 0 948888..950084 + 398 71278280 - CPS_0940 - major facilitator family transporter 908 39.84 0 950072..951055 + 327 71282424 - CPS_0941 - putative lipase 909 41.61 +1 951183..951665 - 160 71278815 - CPS_0942 - putative lipoprotein 910 41.70 +1 952016..952828 - 270 71280310 bdhA1 CPS_0943 - D-beta-hydroxybutyrate dehydrogenase 911 41.22 0 953358..953636 - 92 71280757 - CPS_0944 - hypothetical protein 912 39.55 0 953817..953993 - 58 71280935 - CPS_0945 - hypothetical protein 913 40.01 0 954102..955448 - 448 71281294 accC CPS_0946 - acetyl-CoA carboxylase biotin carboxylase subunit 914 42.51 +1 955471..955917 - 148 71279126 accB CPS_0947 - acetyl-CoA carboxylase, biotin carboxyl carrier protein 915 38.10 0 956008..956469 - 153 71281376 aroQ CPS_0948 - 3-dehydroquinate dehydratase 916 30.83 -2 956530..956649 + 39 71279592 - CPS_0949 - hypothetical protein 917 37.78 0 956889..957248 + 119 71282370 - CPS_0950 - hypothetical protein 918 35.81 0 957226..958518 + 430 71281934 - CPS_0951 - hypothetical protein 919 36.13 0 958529..960994 + 821 71279060 - CPS_0952 - GGDEF/EAL domain-containing protein 920 37.33 0 961255..963081 - 608 71278562 dipZ CPS_0953 - thiol:disulfide interchange protein precursor 921 34.94 0 963087..963398 - 103 71280302 cutA CPS_0954 - periplasmic divalent cation tolerance protein CutA 922 39.50 0 963531..964049 + 172 71280199 fsxA CPS_0955 - fxsA protein 923 38.83 0 964180..964470 + 96 71278078 groES CPS_0956 - co-chaperonin GroES 924 41.47 0 964651..966297 + 548 71279743 groEL CPS_0957 - chaperone protein GroEL 925 36.36 0 966746..967804 - 352 71279065 - CPS_0958 - ompA family protein 926 34.01 -1 968039..968185 - 48 71280868 - CPS_0959 - hypothetical protein 927 37.13 0 968189..968425 - 78 71280644 - CPS_0960 - hypothetical protein 928 36.48 0 968369..969193 + 274 71279452 - CPS_0961 - hypothetical protein 929 36.52 0 969211..969744 + 177 71280780 - CPS_0962 - RNA polymerase sigma factor SigX 930 36.56 0 969804..969896 + 30 71281289 - CPS_0963 - hypothetical protein 38.03 MEAN 3.50 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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