IslandPath Analysis: Colwellia psychrerythraea 34H



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 38.03   STD DEV: 3.50
Colwellia psychrerythraea 34H, complete genome - 1..5373180
4910 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
761	 35.23	0	812543..813229	+	228	71280882	-	CPS_0794	-	sigma-70 family RNA polymerase sigma factor
762	 35.00	0	813258..813497	+	79	71281253	-	CPS_0795	-	hypothetical protein
763	 36.76	0	813576..814130	+	184	71280516	-	CPS_0796	-	hypothetical protein
764	 36.32	0	814222..815997	-	591	71280522	-	CPS_0797	-	putative hemolysin
765	 41.33	0	816096..816995	-	299	71282083	-	CPS_0798	-	LysR family transcriptional regulator
766	 41.15	0	817093..817821	+	242	71281553	-	CPS_0799	-	hypothetical protein
767	 38.33	0	817935..818294	+	119	71278218	-	CPS_0800	-	hypothetical protein
768	 37.01	0	818335..819231	-	298	71278918	-	CPS_0801	-	LysR family transcriptional regulator
769	 38.78	0	819351..819974	+	207	71279213	-	CPS_0802	-	DJ-1/PfpI family protein
770	 36.64	0	820137..820529	+	130	71280305	-	CPS_0803	-	glyoxalase family protein
771	 39.01	0	820760..821182	+	140	71280970	-	CPS_0804	-	MarR family transcriptional regulator
772	 38.56	0	821312..821962	+	216	71282613	-	CPS_0805	-	putative glutathione S-transferase
773	 38.28	0	821993..825244	+	1083	71278593	-	CPS_0806	-	hypothetical protein
774	 38.01	0	825246..826571	+	441	71279928	-	CPS_0807	-	hypothetical protein
775	 35.08	0	826795..827652	-	285	71279680	-	CPS_0808	-	hypothetical protein
776	 39.35	0	827693..828157	-	154	71280497	-	CPS_0809	-	DoxD family protein
777	 37.72	0	828258..829100	-	280	71282072	-	CPS_0810	-	hypothetical protein
778	 40.02	0	829093..830034	-	313	71277983	-	CPS_0811	-	hypothetical protein
779	 43.51	+1	830291..830575	-	94	71278849	-	CPS_0812	-	hypothetical protein
780	 40.00	0	830608..830937	-	109	71279084	-	CPS_0813	-	thioredoxin
781	 37.71	0	830975..831454	-	159	71280788	-	CPS_0814	-	hypothetical protein
782	 40.10	0	831656..832483	+	275	71278512	-	CPS_0815	-	AraC family transcriptional regulator
783	 39.66	0	832573..833442	-	289	71277995	-	CPS_0816	-	LysR family transcriptional regulator
784	 40.50	0	833593..834723	+	376	71279579	-	CPS_0817	-	alcohol dehydrogenase, class III
785	 35.29	0	834656..834910	-	84	71279052	-	CPS_0818	-	hypothetical protein
786	 42.25	+1	834833..835684	+	283	71279566	-	CPS_0819	-	putative esterase
787	 35.73	0	835988..836989	+	333	71281361	-	CPS_0820	-	GGDEF domain-containing protein
788	 42.95	+1	837156..837800	-	214	71280526	-	CPS_0821	-	hypothetical protein
789	 33.33	-1	837863..838009	-	48	71282270	-	CPS_0822	-	hypothetical protein
790	 35.07	0	838190..838534	+	114	71278039	-	CPS_0823	-	transcriptional regulator
791	 39.45	0	838732..839499	+	255	71279837	-	CPS_0824	-	short chain dehydrogenase/reductase family oxidoreductase
792	 34.09	-1	839471..839602	+	43	71278762	-	CPS_0825	-	hypothetical protein
793	 42.18	+1	839604..841073	-	489	71278086	-	CPS_0826	-	dihydrolipoamide dehydrogenase
794	 35.93	0	841106..841375	-	89	71280173	-	CPS_0827	-	putative glutaredoxin
795	 37.76	0	841607..842578	-	323	71279493	-	CPS_0828	-	alpha/beta fold family hydrolase
796	 36.21	0	842614..842856	-	80	71280925	-	CPS_0829	-	glutaredoxin
797	 40.38	0	843111..843323	+	70	71280412	-	CPS_0830	-	hypothetical protein
798	 43.32	+1	843350..844240	+	296	71282316	-	CPS_0831	-	LysR family transcriptional regulator
799	 41.38	0	844312..845268	-	318	71278676	-	CPS_0832	-	hypothetical protein
800	 33.51	-1	845730..846281	+	183	71279115	-	CPS_0833	-	hypothetical protein
801	 38.11	0	846426..848372	+	648	71282506	-	CPS_0834	-	hypothetical protein
802	 41.12	0	848775..849827	+	350	71281650	-	CPS_0835	-	hypothetical protein
803	 28.95	-2	849896..850009	+	37	71281280	-	CPS_0836	-	hypothetical protein
804	 38.84	0	849906..850958	+	350	71280765	-	CPS_0837	-	hypothetical protein
805	 41.04	0	851096..853432	-	778	71281320	-	CPS_0838	-	aminotransferase, class V
806	 38.44	0	853812..854672	+	286	71277967	-	CPS_0839	-	sodium/bile acid symporter family protein
807	 37.97	0	854677..855669	-	330	71279736	-	CPS_0840	-	AraC family transcriptional regulator
808	 39.26	0	855958..857712	+	584	71281770	atsA	CPS_0841	-	arylsulfatase
809	 41.59	+1	857865..859814	+	649	71278610	-	CPS_0842	-	putative surface protein
810	 29.44	-2	859906..860085	-	59	71281351	-	CPS_0843	-	hypothetical protein
811	 38.60	0	860021..861103	+	360	71280220	-	CPS_0844	-	putative lipoprotein
812	 44.79	+1	861296..861583	+	95	71279972	-	CPS_0845	-	hypothetical protein
813	 37.71	0	861645..862580	+	311	71279471	-	CPS_0846	-	hypothetical protein
814	 37.02	0	862583..863368	+	261	71279174	-	CPS_0847	-	hypothetical protein
815	 39.10	0	863474..864670	-	398	71278489	hmpA	CPS_0848	-	nitric oxide dioxygenase
816	 39.39	0	864748..866034	-	428	71277812	-	CPS_0849	-	putative ATP synthase F0, A subunit
817	 35.90	0	866036..866308	-	90	71280777	-	CPS_0850	-	hypothetical protein
818	 42.55	+1	866544..868127	+	527	71282073	-	CPS_0851	-	anaerobic nitric oxide reductase transcription regulator
819	 35.00	0	868124..868423	-	99	71281986	-	CPS_0852	-	hypothetical protein
820	 39.04	0	868844..869737	-	297	71280250	-	CPS_0853	-	putative glycine cleavage operon activator
821	 42.37	+1	870022..871338	-	438	71281641	-	CPS_0854	-	amidohydrolase family protein
822	 35.04	0	871431..871547	+	38	71279176	-	CPS_0855	-	hypothetical protein
823	 37.89	0	871874..873607	-	577	71279865	-	CPS_0856	-	M16 family metallopeptidase
824	 39.49	0	873604..874740	-	378	71280570	pqqE	CPS_0857	-	pyrroloquinoline quinone biosynthesis protein PqqE
825	 35.53	0	874733..875005	-	90	71281262	pqqD	CPS_0858	-	pyrroloquinoline quinone biosynthesis protein PqqD
826	 41.27	0	875002..875757	-	251	71282639	pqqC	CPS_0859	-	pyrroloquinoline quinone biosynthesis protein PqqC
827	 41.98	+1	875726..875887	-	53	71279201	-	CPS_0860	-	hypothetical protein
828	 41.07	0	876088..877005	-	305	71279293	pqqB	CPS_0861	-	pyrroloquinoline quinone biosynthesis protein PqqB
829	 31.94	-1	877244..877315	-	23	71279223	pqqA	CPS_0862	-	coenzyme PQQ biosynthesis protein A
830	 38.56	0	877425..878381	-	318	71278187	pip1	CPS_0863	-	proline iminopeptidase
831	 37.30	0	878843..879094	-	83	71281975	rpsQ	CPS_0864	-	ribosomal protein S17
832	 38.54	0	879094..879285	-	63	71278351	rpmC	CPS_0865	-	ribosomal protein L29
833	 43.48	+1	879285..879698	-	137	71280332	rplP	CPS_0866	-	50S ribosomal protein L16
834	 43.82	+1	879710..880405	-	231	71282222	rpsC	CPS_0867	-	ribosomal protein S3
835	 40.84	0	880418..880750	-	110	71281105	rplV	CPS_0868	-	ribosomal protein L22
836	 43.48	+1	880762..881037	-	91	71281186	rpsS	CPS_0869	-	30S ribosomal protein S19
837	 45.21	+2	881119..881943	-	274	71279504	rplB	CPS_0870	-	50S ribosomal protein L2
838	 39.60	0	881956..882258	-	100	71279906	rplW	CPS_0871	-	50S ribosomal protein L23
839	 42.24	+1	882255..882860	-	201	71278848	rplD	CPS_0872	-	50S ribosomal protein L4
840	 42.72	+1	882877..883515	-	212	71278595	rplC	CPS_0873	-	ribosomal protein L3
841	 41.67	+1	883530..883841	-	103	71278063	rpsJ	CPS_0874	-	ribosomal protein S10
842	 40.79	0	884821..886926	+	701	71279669	fusA1	CPS_0875	-	elongation factor G
843	 30.21	-2	887028..887123	+	31	71278825	-	CPS_0876	-	hypothetical protein
844	 33.62	-1	887258..888289	-	343	71281466	-	CPS_0877	-	hypothetical protein
845	 35.27	0	888744..888950	-	68	71281977	-	CPS_0878	-	hypothetical protein
846	 34.81	0	889352..889486	+	44	71280032	-	CPS_0879	-	hypothetical protein
847	 40.56	0	889476..889724	+	82	71278085	-	CPS_0880	-	hypothetical protein
848	 39.18	0	890002..891369	-	455	71281719	-	CPS_0881	-	zona occludens toxin-like protein
849	 32.35	-1	891459..891863	-	134	71282257	-	CPS_0882	-	hypothetical protein
850	 35.10	0	891860..893221	-	453	71278957	-	CPS_0883	-	hypothetical protein
851	 41.67	+1	893342..893569	-	75	71278203	-	CPS_0884	-	hypothetical protein
852	 38.43	0	893585..893839	-	84	71280335	-	CPS_0885	-	hypothetical protein
853	 38.26	0	893846..894190	-	114	71282101	-	CPS_0886	-	hypothetical protein
854	 40.24	0	894216..895649	-	477	71279225	-	CPS_0887	-	putative phage replication initiation protein
855	 37.75	0	895639..895842	-	67	71280960	-	CPS_0888	-	hypothetical protein
856	 37.45	0	895845..896087	-	80	71281183	-	CPS_0889	-	putative transcriptional regulator
857	 28.32	-2	896199..896597	+	132	71280409	-	CPS_0890	-	hypothetical protein
858	 32.72	-1	896560..896721	-	53	71282165	-	CPS_0891	-	hypothetical protein
859	 29.72	-2	896774..897244	+	156	71281502	-	CPS_0892	-	hypothetical protein
860	 33.33	-1	897186..897296	+	36	71280591	-	CPS_0893	-	hypothetical protein
38.03	MEAN

3.50	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.