IslandPath Analysis: Colwellia psychrerythraea 34H



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 38.03   STD DEV: 3.50
Colwellia psychrerythraea 34H, complete genome - 1..5373180
4910 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
716	 37.99	0	752366..752644	+	92	71282523	ppiC1	CPS_0749	-	peptidyl-prolyl cis-trans isomerase C
717	 36.05	0	753084..753377	+	97	71281822	-	CPS_0750	-	hypothetical protein
718	 41.94	+1	753796..756165	-	789	71278628	-	CPS_0751	-	cold-active alkaline serine protease
719	 32.13	-1	756376..756624	+	82	71278632	-	CPS_0752	-	hypothetical protein
720	 41.97	+1	756621..758450	+	609	71280567	-	CPS_0753	-	alkaline serine protease
721	 40.14	0	758752..760455	+	567	71279357	-	CPS_0754	-	alkaline serine protease
722	 35.48	0	760546..763707	+	1053	71278198	-	CPS_0755	-	GGDEF domain-containing protein
723	 37.42	0	763721..766702	-	993	71278484	-	CPS_0756	-	sensory box sensor histidine kinase/DNA-binding response regulator
724	 34.46	-1	767101..767277	-	58	71281786	-	CPS_0757	-	hypothetical protein
725	 40.22	0	767326..768399	-	357	71282508	-	CPS_0758	-	hypothetical protein
726	 43.79	+1	768667..769020	-	117	71281287	-	CPS_0759	-	methylmalonate-semialdehyde dehydrogenase, interruption
727	 44.61	+1	769215..769808	+	197	71278284	-	CPS_0760	-	hypothetical protein
728	 41.21	0	770682..775289	+	1535	71281776	-	CPS_0761	-	putative glutamate synthase, ferredoxin-dependent
729	 43.73	+1	775310..776800	+	496	71280317	gltD	CPS_0762	-	glutamate synthase subunit beta
730	 36.61	0	777129..779114	+	661	71280933	-	CPS_0763	-	methyl-accepting chemotaxis protein
731	 36.99	0	779733..781535	+	600	71279455	-	CPS_0764	-	hypothetical protein
732	 34.88	0	781568..783835	+	755	71280192	-	CPS_0765	-	hypothetical protein
733	 38.49	0	783835..784707	+	290	71278055	-	CPS_0766	-	hypothetical protein
734	 33.23	-1	785114..786040	+	308	71278793	-	CPS_0767	-	auxin efflux carrier family protein
735	 44.44	+1	786206..787240	+	344	71279082	selD	CPS_0768	-	selenide, water dikinase
736	 41.11	0	787237..788355	+	372	71281259	-	CPS_0769	-	tRNA 2-selenouridine synthase
737	 38.10	0	788473..789375	-	300	71277790	-	CPS_0770	-	LysR family transcriptional regulator
738	 38.59	0	789454..790404	+	316	71281996	-	CPS_0771	-	isochorismatase family protein
739	 32.20	-1	790503..790679	+	58	71280769	-	CPS_0772	-	hypothetical protein
740	 36.21	0	790579..791169	+	196	71279190	-	CPS_0773	-	hypothetical protein
741	 38.98	0	791518..792774	+	418	71278458	-	CPS_0774	-	RND family efflux transporter MFP subunit
742	 38.80	0	792878..793609	+	243	71279130	-	CPS_0775	-	ABC transporter, ATP-binding protein
743	 39.27	0	793627..796050	+	807	71280520	-	CPS_0776	-	putative permease
744	 37.50	0	796219..796314	+	31	71281190	-	CPS_0777	-	hypothetical protein
745	 41.27	0	796448..797833	+	461	71280257	-	CPS_0778	-	sigma-54 dependent DNA-binding response regulator
746	 37.10	0	797820..799226	+	468	71280193	-	CPS_0779	-	sensor histidine kinase
747	 39.38	0	799355..799966	+	203	71279381	-	CPS_0780	-	exonuclease
748	 34.63	0	800061..802835	-	924	71278148	-	CPS_0781	-	TPR domain-containing protein
749	 27.13	-2	803022..803150	+	42	71282385	-	CPS_0782	-	hypothetical protein
750	 39.34	0	803083..803814	+	243	71282307	-	CPS_0783	-	hypothetical protein
751	 37.38	0	804081..804623	-	180	71280430	-	CPS_0784	-	RNA methyltransferase
752	 32.26	-1	804969..805061	-	30	71279717	-	CPS_0785	-	hypothetical protein
753	 39.23	0	805110..806144	+	344	71278980	-	CPS_0786	-	M50 family peptidase
754	 43.12	+1	806562..806837	-	91	71282329	-	CPS_0787	-	IS110 family transposase truncated
755	 41.90	+1	807552..809372	+	606	71282140	-	CPS_0788	-	thermostable serine protease
756	 45.47	+2	809468..810217	-	249	71281442	-	CPS_0789	-	hypothetical protein
757	 41.35	0	810810..811370	-	186	71278929	-	CPS_0790	-	hypothetical protein
758	 42.62	+1	811520..811939	-	139	71278193	-	CPS_0791	-	hypothetical protein
759	 28.99	-2	811955..812092	-	45	71278278	-	CPS_0792	-	hypothetical protein
760	 40.00	0	812178..812282	-	34	71279922	-	CPS_0793	-	hypothetical protein
761	 35.23	0	812543..813229	+	228	71280882	-	CPS_0794	-	sigma-70 family RNA polymerase sigma factor
762	 35.00	0	813258..813497	+	79	71281253	-	CPS_0795	-	hypothetical protein
763	 36.76	0	813576..814130	+	184	71280516	-	CPS_0796	-	hypothetical protein
764	 36.32	0	814222..815997	-	591	71280522	-	CPS_0797	-	putative hemolysin
765	 41.33	0	816096..816995	-	299	71282083	-	CPS_0798	-	LysR family transcriptional regulator
766	 41.15	0	817093..817821	+	242	71281553	-	CPS_0799	-	hypothetical protein
767	 38.33	0	817935..818294	+	119	71278218	-	CPS_0800	-	hypothetical protein
768	 37.01	0	818335..819231	-	298	71278918	-	CPS_0801	-	LysR family transcriptional regulator
769	 38.78	0	819351..819974	+	207	71279213	-	CPS_0802	-	DJ-1/PfpI family protein
770	 36.64	0	820137..820529	+	130	71280305	-	CPS_0803	-	glyoxalase family protein
771	 39.01	0	820760..821182	+	140	71280970	-	CPS_0804	-	MarR family transcriptional regulator
772	 38.56	0	821312..821962	+	216	71282613	-	CPS_0805	-	putative glutathione S-transferase
773	 38.28	0	821993..825244	+	1083	71278593	-	CPS_0806	-	hypothetical protein
774	 38.01	0	825246..826571	+	441	71279928	-	CPS_0807	-	hypothetical protein
775	 35.08	0	826795..827652	-	285	71279680	-	CPS_0808	-	hypothetical protein
776	 39.35	0	827693..828157	-	154	71280497	-	CPS_0809	-	DoxD family protein
777	 37.72	0	828258..829100	-	280	71282072	-	CPS_0810	-	hypothetical protein
778	 40.02	0	829093..830034	-	313	71277983	-	CPS_0811	-	hypothetical protein
779	 43.51	+1	830291..830575	-	94	71278849	-	CPS_0812	-	hypothetical protein
780	 40.00	0	830608..830937	-	109	71279084	-	CPS_0813	-	thioredoxin
781	 37.71	0	830975..831454	-	159	71280788	-	CPS_0814	-	hypothetical protein
782	 40.10	0	831656..832483	+	275	71278512	-	CPS_0815	-	AraC family transcriptional regulator
783	 39.66	0	832573..833442	-	289	71277995	-	CPS_0816	-	LysR family transcriptional regulator
784	 40.50	0	833593..834723	+	376	71279579	-	CPS_0817	-	alcohol dehydrogenase, class III
785	 35.29	0	834656..834910	-	84	71279052	-	CPS_0818	-	hypothetical protein
786	 42.25	+1	834833..835684	+	283	71279566	-	CPS_0819	-	putative esterase
787	 35.73	0	835988..836989	+	333	71281361	-	CPS_0820	-	GGDEF domain-containing protein
788	 42.95	+1	837156..837800	-	214	71280526	-	CPS_0821	-	hypothetical protein
789	 33.33	-1	837863..838009	-	48	71282270	-	CPS_0822	-	hypothetical protein
790	 35.07	0	838190..838534	+	114	71278039	-	CPS_0823	-	transcriptional regulator
791	 39.45	0	838732..839499	+	255	71279837	-	CPS_0824	-	short chain dehydrogenase/reductase family oxidoreductase
792	 34.09	-1	839471..839602	+	43	71278762	-	CPS_0825	-	hypothetical protein
793	 42.18	+1	839604..841073	-	489	71278086	-	CPS_0826	-	dihydrolipoamide dehydrogenase
794	 35.93	0	841106..841375	-	89	71280173	-	CPS_0827	-	putative glutaredoxin
795	 37.76	0	841607..842578	-	323	71279493	-	CPS_0828	-	alpha/beta fold family hydrolase
796	 36.21	0	842614..842856	-	80	71280925	-	CPS_0829	-	glutaredoxin
797	 40.38	0	843111..843323	+	70	71280412	-	CPS_0830	-	hypothetical protein
798	 43.32	+1	843350..844240	+	296	71282316	-	CPS_0831	-	LysR family transcriptional regulator
799	 41.38	0	844312..845268	-	318	71278676	-	CPS_0832	-	hypothetical protein
800	 33.51	-1	845730..846281	+	183	71279115	-	CPS_0833	-	hypothetical protein
801	 38.11	0	846426..848372	+	648	71282506	-	CPS_0834	-	hypothetical protein
802	 41.12	0	848775..849827	+	350	71281650	-	CPS_0835	-	hypothetical protein
803	 28.95	-2	849896..850009	+	37	71281280	-	CPS_0836	-	hypothetical protein
804	 38.84	0	849906..850958	+	350	71280765	-	CPS_0837	-	hypothetical protein
805	 41.04	0	851096..853432	-	778	71281320	-	CPS_0838	-	aminotransferase, class V
806	 38.44	0	853812..854672	+	286	71277967	-	CPS_0839	-	sodium/bile acid symporter family protein
807	 37.97	0	854677..855669	-	330	71279736	-	CPS_0840	-	AraC family transcriptional regulator
808	 39.26	0	855958..857712	+	584	71281770	atsA	CPS_0841	-	arylsulfatase
809	 41.59	+1	857865..859814	+	649	71278610	-	CPS_0842	-	putative surface protein
810	 29.44	-2	859906..860085	-	59	71281351	-	CPS_0843	-	hypothetical protein
811	 38.60	0	860021..861103	+	360	71280220	-	CPS_0844	-	putative lipoprotein
812	 44.79	+1	861296..861583	+	95	71279972	-	CPS_0845	-	hypothetical protein
813	 37.71	0	861645..862580	+	311	71279471	-	CPS_0846	-	hypothetical protein
814	 37.02	0	862583..863368	+	261	71279174	-	CPS_0847	-	hypothetical protein
815	 39.10	0	863474..864670	-	398	71278489	hmpA	CPS_0848	-	nitric oxide dioxygenase
38.03	MEAN

3.50	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.