IslandPath Analysis: Colwellia psychrerythraea 34H



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 38.03   STD DEV: 3.50
Colwellia psychrerythraea 34H, complete genome - 1..5373180
4910 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
686	 38.65	0	720124..720330	+	68	71278873	-	CPS_0718	-	cold shock DNA-binding domain-containing protein
687	 43.41	+1	720872..722101	+	409	71279935	-	CPS_0719	-	putative spore maturation protein A/B
688	 37.27	0	722390..723049	-	219	71281079	-	CPS_0720	-	hemolysin III
689	 33.33	-1	723183..723401	-	72	71280921	-	CPS_0721	-	EF hand domain-containing protein
690	 39.99	0	723827..725269	+	480	71281380	-	CPS_0722	-	alpha/beta fold family hydrolase
691	 39.68	0	725332..726087	+	251	71282460	natA	CPS_0723	-	ATP-binding transport protein NatA
692	 39.04	0	726084..727274	+	396	71279262	natB	CPS_0724	-	protein NatB
693	 40.70	0	727671..728213	+	180	71281281	-	CPS_0725	-	sigma-70 family RNA polymerase sigma factor
694	 37.39	0	728210..728875	+	221	71279558	-	CPS_0726	-	hypothetical protein
695	 37.40	0	729194..729439	-	81	71279858	-	CPS_0727	-	hypothetical protein
696	 41.19	0	729351..730610	+	419	71278068	glyA1	CPS_0728	-	serine hydroxymethyltransferase
697	 38.96	0	730921..731418	+	165	71281647	-	CPS_0729	-	transcriptional regulator NrdR
698	 41.03	0	731492..732661	+	389	71282342	ribD	CPS_0730	-	riboflavin biosynthesis protein RibD
699	 40.20	0	732709..733407	+	232	71280235	ribE1	CPS_0731	-	riboflavin synthase subunit alpha
700	 39.82	0	733549..734658	+	369	71280915	ribB	CPS_0732	-	3,4-dihydroxy-2-butanone-4-phosphate synthase
701	 38.44	0	734820..735995	+	391	71280551	-	CPS_0733	-	hypothetical protein
702	 37.43	0	736051..736758	+	235	71279893	-	CPS_0734	-	hypothetical protein
703	 35.28	0	736745..737515	+	256	71280157	-	CPS_0735	-	hypothetical protein
704	 36.04	0	737483..737593	-	36	71278223	-	CPS_0736	-	hypothetical protein
705	 39.52	0	737654..737863	-	69	71278479	-	CPS_0737	-	cold shock DNA-binding domain-containing protein
706	 39.73	0	738338..741259	-	973	71281480	valS	CPS_0738	-	valyl-tRNA synthetase
707	 40.72	0	741391..741864	-	157	71280374	holC	CPS_0739	-	DNA polymerase III, chi subunit
708	 41.57	+1	741959..743464	-	501	71279435	pepA	CPS_0740	-	leucyl aminopeptidase
709	 38.56	0	743693..744859	+	388	71279918	-	CPS_0741	-	putative permease
710	 36.30	0	744859..744993	+	44	71279374	-	CPS_0742	-	hypothetical protein
711	 39.70	0	744993..746060	+	355	71277954	-	CPS_0743	-	putative permease
712	 37.92	0	746189..746689	-	166	71279643	-	CPS_0744	-	hypothetical protein
713	 38.10	0	746998..750081	-	1027	71281409	-	CPS_0745	-	AcrB/AcrD/AcrF family protein
714	 39.60	0	750096..751196	-	366	71280721	-	CPS_0746	-	AcrA/E family efflux transporter MFP subunit
715	 38.00	0	751338..751958	+	206	71280732	-	CPS_0747	-	TetR family transcriptional regulator
716	 37.99	0	752366..752644	+	92	71282523	ppiC1	CPS_0749	-	peptidyl-prolyl cis-trans isomerase C
717	 36.05	0	753084..753377	+	97	71281822	-	CPS_0750	-	hypothetical protein
718	 41.94	+1	753796..756165	-	789	71278628	-	CPS_0751	-	cold-active alkaline serine protease
719	 32.13	-1	756376..756624	+	82	71278632	-	CPS_0752	-	hypothetical protein
720	 41.97	+1	756621..758450	+	609	71280567	-	CPS_0753	-	alkaline serine protease
721	 40.14	0	758752..760455	+	567	71279357	-	CPS_0754	-	alkaline serine protease
722	 35.48	0	760546..763707	+	1053	71278198	-	CPS_0755	-	GGDEF domain-containing protein
723	 37.42	0	763721..766702	-	993	71278484	-	CPS_0756	-	sensory box sensor histidine kinase/DNA-binding response regulator
724	 34.46	-1	767101..767277	-	58	71281786	-	CPS_0757	-	hypothetical protein
725	 40.22	0	767326..768399	-	357	71282508	-	CPS_0758	-	hypothetical protein
726	 43.79	+1	768667..769020	-	117	71281287	-	CPS_0759	-	methylmalonate-semialdehyde dehydrogenase, interruption
727	 44.61	+1	769215..769808	+	197	71278284	-	CPS_0760	-	hypothetical protein
728	 41.21	0	770682..775289	+	1535	71281776	-	CPS_0761	-	putative glutamate synthase, ferredoxin-dependent
729	 43.73	+1	775310..776800	+	496	71280317	gltD	CPS_0762	-	glutamate synthase subunit beta
730	 36.61	0	777129..779114	+	661	71280933	-	CPS_0763	-	methyl-accepting chemotaxis protein
731	 36.99	0	779733..781535	+	600	71279455	-	CPS_0764	-	hypothetical protein
732	 34.88	0	781568..783835	+	755	71280192	-	CPS_0765	-	hypothetical protein
733	 38.49	0	783835..784707	+	290	71278055	-	CPS_0766	-	hypothetical protein
734	 33.23	-1	785114..786040	+	308	71278793	-	CPS_0767	-	auxin efflux carrier family protein
735	 44.44	+1	786206..787240	+	344	71279082	selD	CPS_0768	-	selenide, water dikinase
736	 41.11	0	787237..788355	+	372	71281259	-	CPS_0769	-	tRNA 2-selenouridine synthase
737	 38.10	0	788473..789375	-	300	71277790	-	CPS_0770	-	LysR family transcriptional regulator
738	 38.59	0	789454..790404	+	316	71281996	-	CPS_0771	-	isochorismatase family protein
739	 32.20	-1	790503..790679	+	58	71280769	-	CPS_0772	-	hypothetical protein
740	 36.21	0	790579..791169	+	196	71279190	-	CPS_0773	-	hypothetical protein
741	 38.98	0	791518..792774	+	418	71278458	-	CPS_0774	-	RND family efflux transporter MFP subunit
742	 38.80	0	792878..793609	+	243	71279130	-	CPS_0775	-	ABC transporter, ATP-binding protein
743	 39.27	0	793627..796050	+	807	71280520	-	CPS_0776	-	putative permease
744	 37.50	0	796219..796314	+	31	71281190	-	CPS_0777	-	hypothetical protein
745	 41.27	0	796448..797833	+	461	71280257	-	CPS_0778	-	sigma-54 dependent DNA-binding response regulator
746	 37.10	0	797820..799226	+	468	71280193	-	CPS_0779	-	sensor histidine kinase
747	 39.38	0	799355..799966	+	203	71279381	-	CPS_0780	-	exonuclease
748	 34.63	0	800061..802835	-	924	71278148	-	CPS_0781	-	TPR domain-containing protein
749	 27.13	-2	803022..803150	+	42	71282385	-	CPS_0782	-	hypothetical protein
750	 39.34	0	803083..803814	+	243	71282307	-	CPS_0783	-	hypothetical protein
751	 37.38	0	804081..804623	-	180	71280430	-	CPS_0784	-	RNA methyltransferase
752	 32.26	-1	804969..805061	-	30	71279717	-	CPS_0785	-	hypothetical protein
753	 39.23	0	805110..806144	+	344	71278980	-	CPS_0786	-	M50 family peptidase
754	 43.12	+1	806562..806837	-	91	71282329	-	CPS_0787	-	IS110 family transposase truncated
755	 41.90	+1	807552..809372	+	606	71282140	-	CPS_0788	-	thermostable serine protease
756	 45.47	+2	809468..810217	-	249	71281442	-	CPS_0789	-	hypothetical protein
757	 41.35	0	810810..811370	-	186	71278929	-	CPS_0790	-	hypothetical protein
758	 42.62	+1	811520..811939	-	139	71278193	-	CPS_0791	-	hypothetical protein
759	 28.99	-2	811955..812092	-	45	71278278	-	CPS_0792	-	hypothetical protein
760	 40.00	0	812178..812282	-	34	71279922	-	CPS_0793	-	hypothetical protein
761	 35.23	0	812543..813229	+	228	71280882	-	CPS_0794	-	sigma-70 family RNA polymerase sigma factor
762	 35.00	0	813258..813497	+	79	71281253	-	CPS_0795	-	hypothetical protein
763	 36.76	0	813576..814130	+	184	71280516	-	CPS_0796	-	hypothetical protein
764	 36.32	0	814222..815997	-	591	71280522	-	CPS_0797	-	putative hemolysin
765	 41.33	0	816096..816995	-	299	71282083	-	CPS_0798	-	LysR family transcriptional regulator
766	 41.15	0	817093..817821	+	242	71281553	-	CPS_0799	-	hypothetical protein
767	 38.33	0	817935..818294	+	119	71278218	-	CPS_0800	-	hypothetical protein
768	 37.01	0	818335..819231	-	298	71278918	-	CPS_0801	-	LysR family transcriptional regulator
769	 38.78	0	819351..819974	+	207	71279213	-	CPS_0802	-	DJ-1/PfpI family protein
770	 36.64	0	820137..820529	+	130	71280305	-	CPS_0803	-	glyoxalase family protein
771	 39.01	0	820760..821182	+	140	71280970	-	CPS_0804	-	MarR family transcriptional regulator
772	 38.56	0	821312..821962	+	216	71282613	-	CPS_0805	-	putative glutathione S-transferase
773	 38.28	0	821993..825244	+	1083	71278593	-	CPS_0806	-	hypothetical protein
774	 38.01	0	825246..826571	+	441	71279928	-	CPS_0807	-	hypothetical protein
775	 35.08	0	826795..827652	-	285	71279680	-	CPS_0808	-	hypothetical protein
776	 39.35	0	827693..828157	-	154	71280497	-	CPS_0809	-	DoxD family protein
777	 37.72	0	828258..829100	-	280	71282072	-	CPS_0810	-	hypothetical protein
778	 40.02	0	829093..830034	-	313	71277983	-	CPS_0811	-	hypothetical protein
779	 43.51	+1	830291..830575	-	94	71278849	-	CPS_0812	-	hypothetical protein
780	 40.00	0	830608..830937	-	109	71279084	-	CPS_0813	-	thioredoxin
781	 37.71	0	830975..831454	-	159	71280788	-	CPS_0814	-	hypothetical protein
782	 40.10	0	831656..832483	+	275	71278512	-	CPS_0815	-	AraC family transcriptional regulator
783	 39.66	0	832573..833442	-	289	71277995	-	CPS_0816	-	LysR family transcriptional regulator
784	 40.50	0	833593..834723	+	376	71279579	-	CPS_0817	-	alcohol dehydrogenase, class III
785	 35.29	0	834656..834910	-	84	71279052	-	CPS_0818	-	hypothetical protein
38.03	MEAN

3.50	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.