version 1.0
Colwellia psychrerythraea 34H, complete genome - 1..5373180 4910 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 3944 38.87 0 4278420..4280045 - 541 71279944 - CPS_4071 - GGDEF/EAL domain-containing protein 3945 31.18 -1 4280096..4280188 + 30 71281305 - CPS_4072 - hypothetical protein 3946 40.88 0 4280365..4281756 - 463 71279264 ffh CPS_4073 - signal recognition particle protein 3947 39.51 0 4281954..4283054 + 366 71278397 - CPS_4074 - putative permease 3948 33.21 -1 4283169..4283966 + 265 71277916 - CPS_4075 - cytochrome C assembly family protein 3949 38.15 0 4284080..4285345 + 421 71282291 - CPS_4076 - putative magnesium and cobalt efflux protein CorB 3950 40.42 0 4285681..4286301 - 206 71281949 - CPS_4077 - putative lipoprotein 3951 38.11 0 4288123..4289712 - 529 71278731 gshA CPS_4078 - glutamate--cysteine ligase 3952 38.40 0 4289880..4292759 - 959 71279948 - CPS_4079 - M16 family metallopeptidase 3953 36.51 0 4292838..4293530 + 230 71279393 - CPS_4080 - pseudouridine synthase Rlu family protein 3954 40.31 0 4293668..4295014 - 448 71280993 - CPS_4081 - sodium-dependent symporter family protein 3955 38.48 0 4295466..4297040 - 524 71280476 lysS CPS_4082 - lysyl-tRNA synthetase 3956 41.13 0 4297120..4298218 - 365 71281667 prfB CPS_4083 - peptide chain release factor 2, programmed frameshift 3957 30.91 -2 4298879..4299250 - 123 71282196 - CPS_4084 - putative granule-associated protein 3958 34.14 -1 4299484..4299855 - 123 71278701 - CPS_4085 - putative granule-associated protein 3959 43.17 +1 4300039..4300902 - 287 71279966 - CPS_4086 - putative granule-associated protein 3960 27.55 -2 4301007..4301438 - 143 71279701 - CPS_4087 - putative polyhydroxyalkanoate synthesis repressor PhaR 3961 36.39 0 4301593..4303356 - 587 71279541 phbC CPS_4088 - poly-beta-hydroxybutyrate polymerase 3962 25.23 -2 4303737..4303847 - 36 71278662 - CPS_4089 - hypothetical protein 3963 35.30 0 4303836..4305053 + 405 71278143 phaZ CPS_4090 - polyhydroxyalkanoate depolymerase, intracellular 3964 37.07 0 4305144..4305920 - 258 71282282 bdhA2 CPS_4091 - D-beta-hydroxybutyrate dehydrogenase 3965 40.11 0 4306609..4307331 + 240 71281971 phbB2 CPS_4092 - acetoacetyl-CoA reductase 3966 37.38 0 4307474..4308190 - 238 71282066 - CPS_4093 - hypothetical protein 3967 40.40 0 4308214..4309968 - 584 71281781 recJ CPS_4094 - single-stranded-DNA-specific exonuclease RecJ 3968 37.74 0 4310099..4310893 - 264 71281370 dsbC CPS_4095 - thiol:disulfide interchange protein DsbC 3969 39.11 0 4311138..4311656 + 172 71280670 - CPS_4096 - flavodoxin FldB 3970 39.31 0 4311964..4313217 + 417 161407972 srmB CPS_4097 - ATP-dependent RNA helicase SrmB 3971 38.62 0 4313529..4314758 + 409 71278556 - CPS_4098 - hypothetical protein 3972 43.78 +1 4314854..4315552 - 232 71278603 aqpZ CPS_4099 - aquaporin Z 3973 36.61 0 4315661..4317460 - 599 71277956 - CPS_4100 - hypothetical protein 3974 34.83 0 4317460..4317993 - 177 71279699 - CPS_4101 - hypothetical protein 3975 35.79 0 4318072..4318845 - 257 71280686 - CPS_4102 - hypothetical protein 3976 29.10 -2 4318908..4319096 - 62 71282468 - CPS_4103 - hypothetical protein 3977 38.53 0 4319112..4320074 + 320 71281093 tal CPS_4104 - transaldolase B 3978 35.98 0 4320369..4321274 + 301 71279346 - CPS_4105 - hypothetical protein 3979 39.03 0 4321478..4322776 - 432 71280073 eno CPS_4106 - phosphopyruvate hydratase 3980 35.24 0 4322842..4322946 + 34 71278065 - CPS_4107 - hypothetical protein 3981 40.27 0 4322943..4324571 - 542 71280015 pyrG CPS_4108 - CTP synthetase 3982 36.31 0 4324802..4324969 - 55 71279551 - CPS_4109 - hypothetical protein 3983 37.52 0 4325366..4325962 + 198 71280917 - CPS_4110 - hypothetical protein 3984 37.40 0 4326080..4326472 - 130 71280253 - CPS_4111 - hypothetical protein 3985 27.78 -2 4326629..4326736 + 35 71282328 - CPS_4112 - hypothetical protein 3986 38.46 0 4326729..4327313 - 194 71281665 - CPS_4113 - RNA methyltransferase 3987 39.22 0 4327324..4328172 - 282 71281735 - CPS_4114 - MazG family protein 3988 39.70 0 4328257..4330470 - 737 71278857 relA CPS_4115 - GTP pyrophosphokinase 3989 38.51 0 4330537..4331946 - 469 71278294 rumA CPS_4116 - 23S rRNA (Uracil-5-)-methyltransferase 3990 36.78 0 4332134..4334980 + 948 71278636 - CPS_4117 - hybrid sensory histidine kinase BarA 3991 40.96 0 4335063..4335311 - 82 71281501 - CPS_4118 - hypothetical protein 3992 38.46 0 4335517..4336257 - 246 71279180 pdxJ CPS_4119 - pyridoxal phosphate biosynthetic protein PdxJ 3993 36.01 0 4336301..4337011 - 236 71279899 recO CPS_4120 - recombination protein O 3994 38.24 0 4337026..4337943 - 305 71280742 era CPS_4121 - GTP-binding protein Era 3995 38.33 0 4337947..4338747 - 266 71281241 rnc CPS_4122 - ribonuclease III 3996 38.16 0 4338786..4339718 - 310 71278915 lepB3 CPS_4123 - signal peptidase I 3997 37.69 0 4339825..4341615 - 596 71281835 lepA CPS_4124 - GTP-binding protein LepA 3998 33.33 -1 4341578..4341778 + 66 71277827 - CPS_4125 - hypothetical protein 3999 37.71 0 4341825..4342304 - 159 71278367 rseC CPS_4126 - sigma-E factor regulatory protein RseC 4000 37.38 0 4342297..4343310 - 337 71280079 rseB CPS_4127 - sigma-E factor regulatory protein RseB 4001 37.18 0 4343383..4344084 - 233 71278080 rseA CPS_4128 - sigma-E factor negative regulatory protein RseA 4002 37.64 0 4344131..4344757 - 208 71281820 rpoE CPS_4129 - RNA polymerase sigma factor RpoE 4003 40.65 0 4345267..4346865 + 532 71282357 nadB CPS_4130 - L-aspartate oxidase 4004 36.23 0 4347319..4347594 - 91 71281404 - CPS_4131 - TPR repeat-containing protein 4005 36.41 0 4347821..4348795 + 324 71279144 - CPS_4132 - putative aminomethyltransferase 4006 41.26 0 4348843..4349334 + 163 71279713 slyD2 CPS_4133 - FKBP-type peptidyl-prolyl cis-trans isomerase SlyD 4007 38.25 0 4349468..4350505 - 345 71279561 recA CPS_4134 - recA protein 4008 38.80 0 4350779..4351675 - 298 71279605 iciA CPS_4135 - chromosome replication initiation inhibitor protein 4009 35.27 0 4351798..4352418 + 206 71280147 - CPS_4136 - amino acid transporter LysE 4010 41.50 0 4352552..4355170 + 872 71282195 mutS CPS_4137 - DNA mismatch repair protein 4011 39.55 0 4355215..4355391 - 58 71281674 - CPS_4138 - hypothetical protein 4012 38.63 0 4355742..4356062 - 106 71281469 - CPS_4140 - hypothetical protein 4013 39.61 0 4356349..4357878 - 509 71277979 - CPS_4141 - sulfate permease family protein 4014 39.31 0 4358112..4358780 - 222 71282365 - CPS_4142 - GntR family transcriptional regulator 4015 38.10 0 4358942..4359991 - 349 71278654 - CPS_4143 - trypsin family protein 4016 37.20 0 4360310..4360516 - 68 71281984 - CPS_4144 - hypothetical protein 4017 35.54 0 4360395..4360757 + 120 71278933 - CPS_4145 - hypothetical protein 4018 39.18 0 4361061..4361795 - 244 71278174 trmB CPS_4146 - tRNA (guanine-N(7)-)-methyltransferase 4019 38.64 0 4361952..4362290 - 112 71282584 - CPS_4147 - hypothetical protein 4020 38.93 0 4362430..4363518 + 362 71281992 mutY CPS_4148 - A/G-specific adenine glycosylase 4021 35.16 0 4363617..4363889 + 90 71278411 - CPS_4149 - hypothetical protein 4022 36.96 0 4364639..4365190 + 183 71277836 - CPS_4152 - putative lipoprotein 4023 38.20 0 4365474..4366295 + 273 71280298 - CPS_4153 - short chain dehydrogenase/reductase family oxidoreductase 4024 33.76 -1 4366288..4367214 + 308 71279894 - CPS_4154 - AraC family transcriptional regulator 4025 39.22 0 4367341..4368156 + 271 71281174 - CPS_4155 - short chain dehydrogenase/reductase family oxidoreductase 4026 35.60 0 4368245..4368862 + 205 71281026 - CPS_4156 - cytochrome c oxidase subunit III family protein 4027 31.37 -1 4368872..4369126 + 84 71278753 - CPS_4157 - hypothetical protein 4028 37.53 0 4369227..4369703 + 158 71279329 - CPS_4158 - hypothetical protein 4029 32.29 -1 4369682..4369777 + 31 71282037 - CPS_4159 - hypothetical protein 4030 36.15 0 4370153..4371040 + 295 71278272 - CPS_4160 - LysR family substrate binding transcriptional regulator 4031 34.11 -1 4371165..4371677 + 170 71279333 - CPS_4161 - hypothetical protein 4032 37.74 0 4371683..4372681 - 332 71280488 - CPS_4162 - hypothetical protein 4033 40.55 0 4372749..4373870 - 373 71278297 - CPS_4163 - HlyD family secretion protein 4034 38.34 0 4374025..4375083 - 352 71278839 - CPS_4164 - response regulator/phosphatase 4035 36.90 0 4375186..4380237 - 1683 71281538 - CPS_4165 - sensory box histidine kinase/response regulator 4036 35.04 0 4380332..4381858 + 508 71281599 - CPS_4166 - response regulator 4037 39.47 0 4381987..4384152 + 721 71282034 - CPS_4167 - sodium/dicarboxylate symporter family protein 4038 39.37 0 4384240..4385100 - 286 71280277 - CPS_4168 - hypothetical protein 4039 37.74 0 4385657..4386382 + 241 71281027 - CPS_4169 - hypothetical protein 4040 42.03 +1 4387770..4390079 - 769 71277810 parC CPS_4171 - DNA topoisomerase IV subunit A 4041 34.03 -1 4390579..4391874 - 431 71282198 - CPS_4172 - GGDEF domain-containing protein 4042 35.55 0 4391871..4393763 - 630 71282600 - CPS_4173 - diguanylate cyclase 4043 40.26 0 4393971..4395212 - 413 71278469 - CPS_4174 - hypothetical protein 38.03 MEAN 3.50 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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1.0