version 1.0
Colwellia psychrerythraea 34H, complete genome - 1..5373180 4910 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 3909 48.67 +2 4240251..4240550 + 99 71282055 soxD2 CPS_4033 - sarcosine oxidase, delta subunit 3910 47.78 +2 4240547..4243570 + 1007 71280977 soxA2 CPS_4034 - sarcosine oxidase, alpha subunit 3911 47.74 +2 4243563..4244159 + 198 71280443 soxG2 CPS_4035 - sarcosine oxidase, gamma subunit 3912 45.28 +2 4244332..4245210 + 292 71281589 purU CPS_4036 - formyltetrahydrofolate deformylase 3913 42.17 +1 4245425..4246024 + 199 71281030 - CPS_4037 - DNA-binding protein 3914 33.33 -1 4246178..4246303 - 41 71280439 - CPS_4038 - hypothetical protein 3915 43.36 +1 4246460..4247656 + 398 71279984 - CPS_4039 - putative glutathione-independent formaldehyde dehydrogenase 3916 46.27 +2 4248468..4249874 - 468 71279414 pntB2 CPS_4040 - NAD(P) transhydrogenase, beta subunit 3917 49.51 +2 4251552..4252787 - 411 71282411 - CPS_4042 - allantoate amidohydrolase 3918 45.31 +2 4253057..4254058 - 333 71281813 mer CPS_4043 - methylenetetrahydromethanopterin reductase 3919 48.08 +2 4254110..4254787 - 225 71281606 - CPS_4044 - NADPH-dependent F420 reductase 3920 47.16 +2 4254784..4255557 - 257 71278490 - CPS_4045 - putative F420-dependent oxidoreductase 3921 44.23 +1 4255542..4256174 - 210 71281854 - CPS_4046 - hypothetical protein 3922 45.58 +2 4256175..4257146 - 323 71278613 cofD CPS_4047 - LPPG:FO 2-phospho-L-lactate transferase 3923 44.65 +1 4257158..4258447 - 429 71279789 - CPS_4048 - hypothetical protein 3924 47.16 +2 4258459..4259637 - 392 71282022 cofG CPS_4049 - FO synthase subunit 1 3925 44.55 +1 4260173..4261126 - 317 71282561 - CPS_4050 - membrane protein 3926 34.00 -1 4262560..4263453 - 297 71281249 - CPS_4052 - membrane protein 3927 47.97 +2 4263652..4264587 - 311 71281519 - CPS_4053 - LysR family substrate binding transcriptional regulator 3928 41.29 0 4264798..4265526 - 242 71280509 - CPS_4054 - hypothetical protein 3929 49.83 +2 4265713..4267155 - 480 71280963 dht CPS_4055 - dihydropyrimidinase 3930 46.64 +2 4267261..4268808 - 515 71281223 - CPS_4056 - NCS1 nucleoside transporter 3931 40.54 0 4270111..4270221 - 36 71278902 - CPS_4058 - hypothetical protein 3932 47.25 +2 4270248..4271591 + 447 71278533 - CPS_4059 - beta alanine--pyruvate transaminase 3933 46.81 +2 4271694..4273184 + 496 71278171 mmsA4 CPS_4060 - methylmalonate-semialdehyde dehydrogenase 3934 38.10 0 4273464..4274072 + 202 71282129 ribA CPS_4061 - GTP cyclohydrolase II 3935 43.38 +1 4274258..4274914 - 218 71281722 - CPS_4062 - TetR family transcriptional regulator 3936 33.84 -1 4275324..4275521 - 65 71279100 - CPS_4063 - L-PSP family endoribonuclease 3937 36.70 0 4275671..4275937 + 88 71279603 - CPS_4064 - hypothetical protein 3938 39.68 0 4276009..4276134 + 41 71280749 - CPS_4065 - hypothetical protein 3939 40.68 0 4276247..4276600 - 117 71281307 rplS CPS_4066 - 50S ribosomal protein L19 3940 43.44 +1 4276636..4277397 - 253 71281063 trmD CPS_4067 - tRNA (guanine-N1)-methyltransferase 3941 37.48 0 4277437..4277967 - 176 71281652 rimM CPS_4068 - 16S rRNA-processing protein 3942 45.93 +2 4277996..4278241 - 81 71279379 rpsP CPS_4069 - ribosomal protein S16 3943 36.97 0 4278231..4278395 + 54 71279798 - CPS_4070 - hypothetical protein 3944 38.87 0 4278420..4280045 - 541 71279944 - CPS_4071 - GGDEF/EAL domain-containing protein 3945 31.18 -1 4280096..4280188 + 30 71281305 - CPS_4072 - hypothetical protein 3946 40.88 0 4280365..4281756 - 463 71279264 ffh CPS_4073 - signal recognition particle protein 3947 39.51 0 4281954..4283054 + 366 71278397 - CPS_4074 - putative permease 3948 33.21 -1 4283169..4283966 + 265 71277916 - CPS_4075 - cytochrome C assembly family protein 3949 38.15 0 4284080..4285345 + 421 71282291 - CPS_4076 - putative magnesium and cobalt efflux protein CorB 3950 40.42 0 4285681..4286301 - 206 71281949 - CPS_4077 - putative lipoprotein 3951 38.11 0 4288123..4289712 - 529 71278731 gshA CPS_4078 - glutamate--cysteine ligase 3952 38.40 0 4289880..4292759 - 959 71279948 - CPS_4079 - M16 family metallopeptidase 3953 36.51 0 4292838..4293530 + 230 71279393 - CPS_4080 - pseudouridine synthase Rlu family protein 3954 40.31 0 4293668..4295014 - 448 71280993 - CPS_4081 - sodium-dependent symporter family protein 3955 38.48 0 4295466..4297040 - 524 71280476 lysS CPS_4082 - lysyl-tRNA synthetase 3956 41.13 0 4297120..4298218 - 365 71281667 prfB CPS_4083 - peptide chain release factor 2, programmed frameshift 3957 30.91 -2 4298879..4299250 - 123 71282196 - CPS_4084 - putative granule-associated protein 3958 34.14 -1 4299484..4299855 - 123 71278701 - CPS_4085 - putative granule-associated protein 3959 43.17 +1 4300039..4300902 - 287 71279966 - CPS_4086 - putative granule-associated protein 3960 27.55 -2 4301007..4301438 - 143 71279701 - CPS_4087 - putative polyhydroxyalkanoate synthesis repressor PhaR 3961 36.39 0 4301593..4303356 - 587 71279541 phbC CPS_4088 - poly-beta-hydroxybutyrate polymerase 3962 25.23 -2 4303737..4303847 - 36 71278662 - CPS_4089 - hypothetical protein 3963 35.30 0 4303836..4305053 + 405 71278143 phaZ CPS_4090 - polyhydroxyalkanoate depolymerase, intracellular 3964 37.07 0 4305144..4305920 - 258 71282282 bdhA2 CPS_4091 - D-beta-hydroxybutyrate dehydrogenase 3965 40.11 0 4306609..4307331 + 240 71281971 phbB2 CPS_4092 - acetoacetyl-CoA reductase 3966 37.38 0 4307474..4308190 - 238 71282066 - CPS_4093 - hypothetical protein 3967 40.40 0 4308214..4309968 - 584 71281781 recJ CPS_4094 - single-stranded-DNA-specific exonuclease RecJ 3968 37.74 0 4310099..4310893 - 264 71281370 dsbC CPS_4095 - thiol:disulfide interchange protein DsbC 3969 39.11 0 4311138..4311656 + 172 71280670 - CPS_4096 - flavodoxin FldB 3970 39.31 0 4311964..4313217 + 417 161407972 srmB CPS_4097 - ATP-dependent RNA helicase SrmB 3971 38.62 0 4313529..4314758 + 409 71278556 - CPS_4098 - hypothetical protein 3972 43.78 +1 4314854..4315552 - 232 71278603 aqpZ CPS_4099 - aquaporin Z 3973 36.61 0 4315661..4317460 - 599 71277956 - CPS_4100 - hypothetical protein 3974 34.83 0 4317460..4317993 - 177 71279699 - CPS_4101 - hypothetical protein 3975 35.79 0 4318072..4318845 - 257 71280686 - CPS_4102 - hypothetical protein 3976 29.10 -2 4318908..4319096 - 62 71282468 - CPS_4103 - hypothetical protein 3977 38.53 0 4319112..4320074 + 320 71281093 tal CPS_4104 - transaldolase B 3978 35.98 0 4320369..4321274 + 301 71279346 - CPS_4105 - hypothetical protein 3979 39.03 0 4321478..4322776 - 432 71280073 eno CPS_4106 - phosphopyruvate hydratase 3980 35.24 0 4322842..4322946 + 34 71278065 - CPS_4107 - hypothetical protein 3981 40.27 0 4322943..4324571 - 542 71280015 pyrG CPS_4108 - CTP synthetase 3982 36.31 0 4324802..4324969 - 55 71279551 - CPS_4109 - hypothetical protein 3983 37.52 0 4325366..4325962 + 198 71280917 - CPS_4110 - hypothetical protein 3984 37.40 0 4326080..4326472 - 130 71280253 - CPS_4111 - hypothetical protein 3985 27.78 -2 4326629..4326736 + 35 71282328 - CPS_4112 - hypothetical protein 3986 38.46 0 4326729..4327313 - 194 71281665 - CPS_4113 - RNA methyltransferase 3987 39.22 0 4327324..4328172 - 282 71281735 - CPS_4114 - MazG family protein 3988 39.70 0 4328257..4330470 - 737 71278857 relA CPS_4115 - GTP pyrophosphokinase 3989 38.51 0 4330537..4331946 - 469 71278294 rumA CPS_4116 - 23S rRNA (Uracil-5-)-methyltransferase 3990 36.78 0 4332134..4334980 + 948 71278636 - CPS_4117 - hybrid sensory histidine kinase BarA 3991 40.96 0 4335063..4335311 - 82 71281501 - CPS_4118 - hypothetical protein 3992 38.46 0 4335517..4336257 - 246 71279180 pdxJ CPS_4119 - pyridoxal phosphate biosynthetic protein PdxJ 3993 36.01 0 4336301..4337011 - 236 71279899 recO CPS_4120 - recombination protein O 3994 38.24 0 4337026..4337943 - 305 71280742 era CPS_4121 - GTP-binding protein Era 3995 38.33 0 4337947..4338747 - 266 71281241 rnc CPS_4122 - ribonuclease III 3996 38.16 0 4338786..4339718 - 310 71278915 lepB3 CPS_4123 - signal peptidase I 3997 37.69 0 4339825..4341615 - 596 71281835 lepA CPS_4124 - GTP-binding protein LepA 3998 33.33 -1 4341578..4341778 + 66 71277827 - CPS_4125 - hypothetical protein 3999 37.71 0 4341825..4342304 - 159 71278367 rseC CPS_4126 - sigma-E factor regulatory protein RseC 4000 37.38 0 4342297..4343310 - 337 71280079 rseB CPS_4127 - sigma-E factor regulatory protein RseB 4001 37.18 0 4343383..4344084 - 233 71278080 rseA CPS_4128 - sigma-E factor negative regulatory protein RseA 4002 37.64 0 4344131..4344757 - 208 71281820 rpoE CPS_4129 - RNA polymerase sigma factor RpoE 4003 40.65 0 4345267..4346865 + 532 71282357 nadB CPS_4130 - L-aspartate oxidase 4004 36.23 0 4347319..4347594 - 91 71281404 - CPS_4131 - TPR repeat-containing protein 4005 36.41 0 4347821..4348795 + 324 71279144 - CPS_4132 - putative aminomethyltransferase 4006 41.26 0 4348843..4349334 + 163 71279713 slyD2 CPS_4133 - FKBP-type peptidyl-prolyl cis-trans isomerase SlyD 4007 38.25 0 4349468..4350505 - 345 71279561 recA CPS_4134 - recA protein 4008 38.80 0 4350779..4351675 - 298 71279605 iciA CPS_4135 - chromosome replication initiation inhibitor protein 38.03 MEAN 3.50 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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