version 1.0
Colwellia psychrerythraea 34H, complete genome - 1..5373180 4910 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 3866 37.71 0 4185982..4186917 + 311 71281653 - CPS_3990 - GGDEF domain-containing protein 3867 38.98 0 4186917..4187978 + 353 71279827 - CPS_3991 - AraC family transcriptional regulator 3868 40.28 0 4187999..4188631 - 210 71278996 - CPS_3992 - hypothetical protein 3869 42.17 +1 4188889..4191582 - 897 71278588 - CPS_3993 - TonB-dependent receptor 3870 42.63 +1 4191761..4194664 - 967 71278022 - CPS_3994 - putative lipoprotein 3871 40.66 0 4194924..4196261 - 445 71281748 amt CPS_3995 - ammonium transporter 3872 42.49 +1 4196515..4197453 + 312 71281546 hemF CPS_3996 - coproporphyrinogen III oxidase 3873 35.62 0 4197528..4197746 - 72 71278500 - CPS_3997 - hypothetical protein 3874 40.44 0 4197953..4198177 - 74 71279488 - CPS_3998 - phage integrase family site specific recombinase 3875 42.59 +1 4198174..4198281 - 35 71279043 - CPS_3999 - hypothetical protein 3876 44.81 +1 4198332..4198514 - 60 71281107 - CPS_4000 - hypothetical protein 3877 36.56 0 4198906..4199805 + 299 71280735 - CPS_4001 - hypothetical protein 3878 43.47 +1 4199891..4200748 + 285 71282181 - CPS_4002 - hypothetical protein 3879 39.50 0 4201041..4201964 - 307 71281789 - CPS_4003 - membrane protein 3880 39.09 0 4202066..4202656 + 196 71278787 - CPS_4004 - TetR family transcriptional regulator 3881 41.87 +1 4202738..4203475 + 245 71279973 - CPS_4005 - carboxymethylenebutenolidase family protein 3882 39.20 0 4203955..4205181 + 408 71281064 - CPS_4006 - hypothetical protein 3883 39.15 0 4205344..4205790 - 148 71280504 - CPS_4007 - MarR family transcriptional regulator 3884 42.64 +1 4205874..4206593 - 239 71282121 - CPS_4008 - hypothetical protein 3885 41.13 0 4206642..4207859 - 405 71282514 - CPS_4009 - putative transporter, BCCT family protein 3886 44.25 +1 4207978..4209663 - 561 71278669 betA2 CPS_4010 - choline dehydrogenase 3887 45.08 +2 4209714..4211177 - 487 71279384 betB2 CPS_4011 - betaine aldehyde dehydrogenase 3888 39.44 0 4211164..4211769 - 201 71279521 betI2 CPS_4012 - transcriptional regulator BetI 3889 43.61 +1 4212467..4213663 - 398 71278752 - CPS_4013 - hypothetical protein 3890 45.58 +2 4213827..4214618 - 263 71279473 - CPS_4014 - hypothetical protein 3891 45.66 +2 4214605..4215618 - 337 71279631 - CPS_4015 - putative electron transfer flavoprotein, alpha subunit 3892 43.96 +1 4215852..4217837 - 661 71280367 - CPS_4016 - iron-sulfur cluster-binding protein 3893 43.67 +1 4217957..4220017 - 686 71281654 - CPS_4017 - oxidoreductase, FAD/FMN-binding 3894 40.72 0 4220066..4220620 - 184 71278180 - CPS_4018 - hypothetical protein 3895 39.51 0 4220624..4221610 - 328 71278697 - CPS_4019 - M19 family peptidase 3896 42.89 +1 4221839..4223731 - 630 71279420 - CPS_4020 - hypothetical protein 3897 39.27 0 4223901..4224962 - 353 71279454 - CPS_4021 - AraC family transcriptional regulator 3898 39.84 0 4225420..4225911 + 163 71280180 fdhG2 CPS_4022 - formate dehydrogenase subunit gamma 3899 44.18 +1 4225908..4227521 + 537 71278646 fdhB2 CPS_4023 - formate dehydrogenase, beta subunit 3900 43.81 +1 4227523..4230423 + 966 71278181 fdhA2 CPS_4024 - formate dehydrogenase, alpha subunit 3901 43.43 +1 4230410..4231261 + 283 71277991 fdhD2 CPS_4025 - formate dehydrogenase accessory protein FdhD 3902 39.04 0 4231300..4231527 + 75 71282383 - CPS_4026 - hypothetical protein 3903 41.24 0 4232364..4233956 - 530 71281475 - CPS_4027 - BCCT family transporter 3904 37.50 0 4234540..4234635 - 31 71280939 - CPS_4028 - hypothetical protein 3905 39.41 0 4234704..4235987 - 427 71279410 - CPS_4029 - Rieske family iron-sulfur cluster-binding protein 3906 42.35 +1 4236340..4237437 + 365 71278714 - CPS_4030 - oxidoreductase, FAD/NAD-binding/iron-sulfur cluster binding protein 3907 46.49 +2 4237657..4238910 + 417 71278318 glyA4 CPS_4031 - serine hydroxymethyltransferase 3908 47.96 +2 4238988..4240238 + 416 71282582 soxB2 CPS_4032 - sarcosine oxidase, beta subunit 3909 48.67 +2 4240251..4240550 + 99 71282055 soxD2 CPS_4033 - sarcosine oxidase, delta subunit 3910 47.78 +2 4240547..4243570 + 1007 71280977 soxA2 CPS_4034 - sarcosine oxidase, alpha subunit 3911 47.74 +2 4243563..4244159 + 198 71280443 soxG2 CPS_4035 - sarcosine oxidase, gamma subunit 3912 45.28 +2 4244332..4245210 + 292 71281589 purU CPS_4036 - formyltetrahydrofolate deformylase 3913 42.17 +1 4245425..4246024 + 199 71281030 - CPS_4037 - DNA-binding protein 3914 33.33 -1 4246178..4246303 - 41 71280439 - CPS_4038 - hypothetical protein 3915 43.36 +1 4246460..4247656 + 398 71279984 - CPS_4039 - putative glutathione-independent formaldehyde dehydrogenase 3916 46.27 +2 4248468..4249874 - 468 71279414 pntB2 CPS_4040 - NAD(P) transhydrogenase, beta subunit 3917 49.51 +2 4251552..4252787 - 411 71282411 - CPS_4042 - allantoate amidohydrolase 3918 45.31 +2 4253057..4254058 - 333 71281813 mer CPS_4043 - methylenetetrahydromethanopterin reductase 3919 48.08 +2 4254110..4254787 - 225 71281606 - CPS_4044 - NADPH-dependent F420 reductase 3920 47.16 +2 4254784..4255557 - 257 71278490 - CPS_4045 - putative F420-dependent oxidoreductase 3921 44.23 +1 4255542..4256174 - 210 71281854 - CPS_4046 - hypothetical protein 3922 45.58 +2 4256175..4257146 - 323 71278613 cofD CPS_4047 - LPPG:FO 2-phospho-L-lactate transferase 3923 44.65 +1 4257158..4258447 - 429 71279789 - CPS_4048 - hypothetical protein 3924 47.16 +2 4258459..4259637 - 392 71282022 cofG CPS_4049 - FO synthase subunit 1 3925 44.55 +1 4260173..4261126 - 317 71282561 - CPS_4050 - membrane protein 3926 34.00 -1 4262560..4263453 - 297 71281249 - CPS_4052 - membrane protein 3927 47.97 +2 4263652..4264587 - 311 71281519 - CPS_4053 - LysR family substrate binding transcriptional regulator 3928 41.29 0 4264798..4265526 - 242 71280509 - CPS_4054 - hypothetical protein 3929 49.83 +2 4265713..4267155 - 480 71280963 dht CPS_4055 - dihydropyrimidinase 3930 46.64 +2 4267261..4268808 - 515 71281223 - CPS_4056 - NCS1 nucleoside transporter 3931 40.54 0 4270111..4270221 - 36 71278902 - CPS_4058 - hypothetical protein 3932 47.25 +2 4270248..4271591 + 447 71278533 - CPS_4059 - beta alanine--pyruvate transaminase 3933 46.81 +2 4271694..4273184 + 496 71278171 mmsA4 CPS_4060 - methylmalonate-semialdehyde dehydrogenase 3934 38.10 0 4273464..4274072 + 202 71282129 ribA CPS_4061 - GTP cyclohydrolase II 3935 43.38 +1 4274258..4274914 - 218 71281722 - CPS_4062 - TetR family transcriptional regulator 3936 33.84 -1 4275324..4275521 - 65 71279100 - CPS_4063 - L-PSP family endoribonuclease 3937 36.70 0 4275671..4275937 + 88 71279603 - CPS_4064 - hypothetical protein 3938 39.68 0 4276009..4276134 + 41 71280749 - CPS_4065 - hypothetical protein 3939 40.68 0 4276247..4276600 - 117 71281307 rplS CPS_4066 - 50S ribosomal protein L19 3940 43.44 +1 4276636..4277397 - 253 71281063 trmD CPS_4067 - tRNA (guanine-N1)-methyltransferase 3941 37.48 0 4277437..4277967 - 176 71281652 rimM CPS_4068 - 16S rRNA-processing protein 3942 45.93 +2 4277996..4278241 - 81 71279379 rpsP CPS_4069 - ribosomal protein S16 3943 36.97 0 4278231..4278395 + 54 71279798 - CPS_4070 - hypothetical protein 3944 38.87 0 4278420..4280045 - 541 71279944 - CPS_4071 - GGDEF/EAL domain-containing protein 3945 31.18 -1 4280096..4280188 + 30 71281305 - CPS_4072 - hypothetical protein 3946 40.88 0 4280365..4281756 - 463 71279264 ffh CPS_4073 - signal recognition particle protein 3947 39.51 0 4281954..4283054 + 366 71278397 - CPS_4074 - putative permease 3948 33.21 -1 4283169..4283966 + 265 71277916 - CPS_4075 - cytochrome C assembly family protein 3949 38.15 0 4284080..4285345 + 421 71282291 - CPS_4076 - putative magnesium and cobalt efflux protein CorB 3950 40.42 0 4285681..4286301 - 206 71281949 - CPS_4077 - putative lipoprotein 3951 38.11 0 4288123..4289712 - 529 71278731 gshA CPS_4078 - glutamate--cysteine ligase 3952 38.40 0 4289880..4292759 - 959 71279948 - CPS_4079 - M16 family metallopeptidase 3953 36.51 0 4292838..4293530 + 230 71279393 - CPS_4080 - pseudouridine synthase Rlu family protein 3954 40.31 0 4293668..4295014 - 448 71280993 - CPS_4081 - sodium-dependent symporter family protein 3955 38.48 0 4295466..4297040 - 524 71280476 lysS CPS_4082 - lysyl-tRNA synthetase 3956 41.13 0 4297120..4298218 - 365 71281667 prfB CPS_4083 - peptide chain release factor 2, programmed frameshift 3957 30.91 -2 4298879..4299250 - 123 71282196 - CPS_4084 - putative granule-associated protein 3958 34.14 -1 4299484..4299855 - 123 71278701 - CPS_4085 - putative granule-associated protein 3959 43.17 +1 4300039..4300902 - 287 71279966 - CPS_4086 - putative granule-associated protein 3960 27.55 -2 4301007..4301438 - 143 71279701 - CPS_4087 - putative polyhydroxyalkanoate synthesis repressor PhaR 3961 36.39 0 4301593..4303356 - 587 71279541 phbC CPS_4088 - poly-beta-hydroxybutyrate polymerase 3962 25.23 -2 4303737..4303847 - 36 71278662 - CPS_4089 - hypothetical protein 3963 35.30 0 4303836..4305053 + 405 71278143 phaZ CPS_4090 - polyhydroxyalkanoate depolymerase, intracellular 3964 37.07 0 4305144..4305920 - 258 71282282 bdhA2 CPS_4091 - D-beta-hydroxybutyrate dehydrogenase 3965 40.11 0 4306609..4307331 + 240 71281971 phbB2 CPS_4092 - acetoacetyl-CoA reductase 38.03 MEAN 3.50 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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1.0