IslandPath Analysis: Colwellia psychrerythraea 34H



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 38.03   STD DEV: 3.50
Colwellia psychrerythraea 34H, complete genome - 1..5373180
4910 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2990	 39.05	0	3205111..3205722	-	203	71278913	-	CPS_3074	-	cytochrome p460
2991	 38.16	0	3205791..3206744	+	317	71282126	-	CPS_3075	-	AraC family transcriptional regulator
2992	 34.81	0	3206814..3208031	+	405	71281114	-	CPS_3076	-	PqiA family integral membrane protein
2993	 35.92	0	3208021..3209763	+	580	71281474	-	CPS_3077	-	putative paraquat-inducible protein B
2994	 34.05	-1	3209826..3210386	+	186	71279412	-	CPS_3078	-	putative lipoprotein
2995	 37.63	0	3210566..3210658	+	30	71280418	-	CPS_3079	-	hypothetical protein
2996	 37.54	0	3210763..3211452	-	229	71280066	-	CPS_3080	-	hypothetical protein
2997	 34.34	-1	3212057..3212752	-	231	71280879	-	CPS_3081	-	hypothetical protein
2998	 34.00	-1	3212973..3213122	+	49	71279578	-	CPS_3082	-	hypothetical protein
2999	 35.56	0	3213159..3213920	-	253	71279042	-	CPS_3083	-	ABC transporter permease
3000	 36.46	0	3213917..3214843	-	308	71280806	-	CPS_3084	-	ABC transporter, ATP-binding protein
3001	 39.76	0	3215291..3217375	-	694	71279998	-	CPS_3085	-	amidohydrolase family protein
3002	 34.94	0	3217779..3218648	-	289	71281856	-	CPS_3086	-	LysR family transcriptional regulator
3003	 32.49	-1	3218751..3219344	+	197	71281017	-	CPS_3087	-	amino acid transporter LysE
3004	 36.61	0	3219724..3219906	+	60	71278016	-	CPS_3088	-	hypothetical protein
3005	 37.06	0	3220072..3222648	-	858	71282087	-	CPS_3089	-	sensory box protein
3006	 39.96	0	3222881..3223348	+	155	71280495	-	CPS_3090	-	ybaK/ebsC protein
3007	 39.60	0	3223489..3225147	-	552	71279635	-	CPS_3091	-	M23B family peptidase
3008	 35.49	0	3225381..3225704	+	107	71278868	-	CPS_3092	-	hypothetical protein
3009	 34.80	0	3225787..3225990	+	67	71282017	-	CPS_3093	-	hypothetical protein
3010	 44.76	+1	3226098..3226517	+	139	71282389	-	CPS_3094	-	thioesterase family protein
3011	 39.83	0	3226832..3227308	+	158	71280626	-	CPS_3095	-	hypothetical protein
3012	 38.50	0	3227758..3228396	+	212	71280388	-	CPS_3096	-	thiopurine S-methyltransferase family protein
3013	 35.56	0	3228461..3229000	+	179	71282189	-	CPS_3097	-	DinB family protein
3014	 39.10	0	3229061..3229372	-	103	71280582	-	CPS_3098	-	hypothetical protein
3015	 43.84	+1	3229398..3230996	-	532	71281382	pfaD	CPS_3099	-	polyunsaturated fatty acid synthase PfaD
3016	 48.48	+2	3231247..3231345	-	32	71279340	-	CPS_3100	-	hypothetical protein
3017	 36.11	0	3231435..3231722	-	95	71279170	-	CPS_3101	-	endo/excinuclease amino terminal domain-containing protein
3018	 41.08	0	3231913..3237963	-	2016	71278985	pfaC	CPS_3102	-	polyunsaturated fatty acid synthase PfaC
3019	 40.10	0	3238255..3240957	-	900	71279011	pfaB	CPS_3103	-	polyunsaturated fatty acid synthase PfaB
3020	 41.94	+1	3240957..3249272	-	2771	71277928	pfaA	CPS_3104	-	polyunsaturated fatty acid synthase PfaA
3021	 41.47	0	3249336..3250208	-	290	71282482	-	CPS_3105	-	hypothetical protein
3022	 38.28	0	3250526..3251374	+	282	71282200	-	CPS_3106	-	4-phosphopantetheinyl transferase
3023	 38.44	0	3251608..3252507	-	299	71280460	-	CPS_3107	-	LysR family transcriptional regulator
3024	 38.85	0	3252615..3253448	+	277	71281146	-	CPS_3108	-	hypothetical protein
3025	 39.17	0	3253480..3253599	+	39	71280093	-	CPS_3109	-	hypothetical protein
3026	 42.76	+1	3253643..3254767	+	374	71280065	-	CPS_3110	-	oxidoreductase, FAD/FMN-binding
3027	 41.02	0	3254858..3256015	+	385	71280814	-	CPS_3111	-	alcohol dehydrogenase, iron-containing
3028	 34.39	-1	3256659..3257132	+	157	71280092	-	CPS_3113	-	hypothetical protein
3029	 33.73	-1	3257254..3257760	+	168	71279254	-	CPS_3114	-	acetyltransferase
3030	 37.23	0	3257884..3258627	+	247	71278374	-	CPS_3115	-	Ser/Thr protein phosphatase family protein
3031	 35.10	0	3258755..3259546	+	263	71279887	-	CPS_3116	-	PhzF family phenazine biosynthesis protein
3032	 33.13	-1	3259737..3260219	+	160	71279172	-	CPS_3117	-	hypothetical protein
3033	 34.05	-1	3260302..3260580	+	92	71278188	-	CPS_3118	-	putative lipoprotein
3034	 39.16	0	3260710..3261018	+	102	71277799	-	CPS_3119	-	putative lipoprotein
3035	 30.62	-2	3261008..3261412	+	134	71282430	-	CPS_3120	-	hypothetical protein
3036	 37.33	0	3261491..3261865	+	124	71280888	-	CPS_3121	-	ISCps9, transposase orfA
3037	 40.32	0	3261796..3262683	+	295	71280233	-	CPS_3122	-	ISCps9, transposase orfB
3038	 30.77	-2	3262907..3263023	-	38	71281613	-	CPS_3123	-	hypothetical protein
3039	 29.33	-2	3263403..3263627	+	74	71282400	-	CPS_3124	-	hypothetical protein
3040	 31.18	-1	3263758..3264129	+	123	71281622	-	CPS_3125	-	putative lipoprotein
3041	 28.33	-2	3264241..3264540	+	99	71278879	-	CPS_3126	-	hypothetical protein
3042	 30.11	-2	3264594..3264872	+	92	71278048	-	CPS_3127	-	hypothetical protein
3043	 33.04	-1	3264991..3265326	+	111	71280268	-	CPS_3128	-	hypothetical protein
3044	 35.46	0	3265400..3265822	+	140	71282304	-	CPS_3129	-	acetyltransferase
3045	 39.56	0	3265929..3266603	+	224	71279449	dehII	CPS_3130	-	haloacid dehalogenase, type II
3046	 44.21	+1	3266737..3267315	+	192	71281161	-	CPS_3131	-	phage SPO1 DNA polymerase-related protein
3047	 35.00	0	3267440..3268039	+	199	71280642	-	CPS_3132	-	hypothetical protein
3048	 40.05	0	3268180..3269028	+	282	71281022	folD1	CPS_3133	-	FolD bifunctional protein
3049	 40.24	0	3269150..3269569	+	139	71281225	-	CPS_3134	-	hypothetical protein
3050	 39.14	0	3269689..3270084	+	131	71279497	-	CPS_3135	-	hypothetical protein
3051	 38.74	0	3270569..3270679	+	36	71281573	-	CPS_3136	-	hypothetical protein
3052	 34.85	0	3270751..3271146	+	131	71278405	-	CPS_3137	-	OsmC family protein
3053	 35.88	0	3271169..3271522	+	117	71280118	-	CPS_3138	-	MerR family transcriptional regulator
3054	 36.34	0	3271607..3272005	+	132	71278164	-	CPS_3139	-	putative 4-carboxymuconolactone decarboxylase
3055	 37.20	0	3272130..3273035	+	301	71281205	-	CPS_3140	-	hypothetical protein
3056	 28.21	-2	3273014..3273130	+	38	71280660	-	CPS_3141	-	hypothetical protein
3057	 37.44	0	3273120..3273776	+	218	71282556	-	CPS_3142	-	amino acid transporter LysE
3058	 39.85	0	3273893..3274675	+	260	71281965	-	CPS_3143	-	PhzF family phenazine biosynthesis protein
3059	 33.73	-1	3274738..3275241	+	167	71278485	-	CPS_3144	-	hypothetical protein
3060	 33.33	-1	3275488..3275694	+	68	71279411	-	CPS_3145	-	hypothetical protein
3061	 38.83	0	3275885..3276430	+	181	71282107	-	CPS_3146	-	hypothetical protein
3062	 42.28	+1	3276529..3276897	+	122	71278262	-	CPS_3147	-	glyoxalase family protein
3063	 37.81	0	3277036..3277437	-	133	71278105	-	CPS_3148	-	putative phage shock protein E
3064	 39.22	0	3277516..3278670	-	384	71278968	-	CPS_3149	-	hypothetical protein
3065	 43.67	+1	3278764..3279885	-	373	71279712	aroC	CPS_3150	-	chorismate synthase
3066	 38.73	0	3280026..3280970	-	314	71280281	-	CPS_3151	-	N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
3067	 31.18	-1	3280939..3281031	+	30	71280501	-	CPS_3152	-	hypothetical protein
3068	 38.51	0	3281119..3281814	+	231	71278197	-	CPS_3153	-	hypothetical protein
3069	 43.31	+1	3281825..3282325	-	166	71281545	sixA	CPS_3154	-	phosphohistidine phosphatase SixA
3070	 37.35	0	3282599..3285409	+	936	71279434	-	CPS_3155	-	zinc metallopeptidase
3071	 39.56	0	3285557..3287851	-	764	161407971	fadJ	CPS_3156	-	multifunctional fatty acid oxidation complex subunit alpha
3072	 43.12	+1	3287920..3289227	-	435	71280472	fadI	CPS_3157	-	3-ketoacyl-CoA thiolase
3073	 40.51	0	3289462..3289698	-	78	71280991	-	CPS_3158	-	hypothetical protein
3074	 39.62	0	3289884..3290885	+	333	71278888	-	CPS_3159	-	hypothetical protein
3075	 41.19	0	3290930..3291985	+	351	71282038	-	CPS_3160	-	hypothetical protein
3076	 38.81	0	3291985..3292587	+	200	71280026	-	CPS_3161	-	hypothetical protein
3077	 39.17	0	3293642..3295714	+	690	71282583	-	CPS_3163	-	TPR domain-containing protein
3078	 39.12	0	3295782..3297527	+	581	71280983	-	CPS_3164	-	batD protein
3079	 38.95	0	3297666..3298181	+	171	71279207	-	CPS_3165	-	RNA polymerase sigma factor
3080	 38.38	0	3298174..3298887	+	237	71280632	-	CPS_3166	-	hypothetical protein
3081	 37.32	0	3299016..3301475	-	819	71281207	-	CPS_3167	-	putative peptidase
3082	 39.84	0	3301704..3302195	+	163	71278834	-	CPS_3168	-	SecC motif-containing protein
3083	 37.86	0	3302215..3302832	-	205	71278471	-	CPS_3169	-	hypothetical protein
3084	 39.24	0	3303032..3304318	-	428	71282190	-	CPS_3170	-	sensor histidine kinase
3085	 43.39	+1	3304400..3304588	+	62	71281806	-	CPS_3171	-	hypothetical protein
3086	 38.35	0	3304710..3305426	-	238	71279233	-	CPS_3172	-	DNA-binding response regulator
3087	 38.54	0	3305759..3306565	+	268	71279793	xth	CPS_3173	-	exonuclease III
3088	 35.49	0	3306578..3307411	+	277	71277877	rrmA	CPS_3174	-	23S rRNA methyltransferase A
3089	 37.83	0	3307436..3307969	-	177	71278395	-	CPS_3175	-	hypothetical protein
38.03	MEAN

3.50	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.