IslandPath Analysis: Colwellia psychrerythraea 34H



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 38.03   STD DEV: 3.50
Colwellia psychrerythraea 34H, complete genome - 1..5373180
4910 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2425	 28.27	-2	2607876..2608349	+	157	71281390	-	CPS_2491	-	hypothetical protein
2426	 32.44	-1	2608449..2609009	+	186	71280705	-	CPS_2492	-	hypothetical protein
2427	 37.25	0	2608992..2609093	-	33	71281988	-	CPS_2493	-	hypothetical protein
2428	 30.75	-2	2609134..2609520	+	128	71281292	-	CPS_2494	-	hypothetical protein
2429	 35.12	0	2609672..2610286	+	204	71278435	-	CPS_2495	-	putative glutathione S-transferase
2430	 31.17	-1	2610373..2610741	+	122	71281447	-	CPS_2496	-	hypothetical protein
2431	 37.24	0	2610776..2611390	+	204	71280064	-	CPS_2497	-	hypothetical protein
2432	 32.03	-1	2611528..2611833	+	101	71280333	-	CPS_2498	-	hypothetical protein
2433	 36.12	0	2612051..2612695	+	214	71277961	-	CPS_2499	-	DJ-1/PfpI family protein
2434	 37.09	0	2612901..2613299	+	132	71279519	-	CPS_2500	-	putative lipoprotein
2435	 31.75	-1	2613899..2614087	+	62	71280961	-	CPS_2501	-	hypothetical protein
2436	 27.78	-2	2614204..2614437	+	77	71278928	-	CPS_2502	-	hypothetical protein
2437	 28.72	-2	2614602..2614991	+	129	71282047	-	CPS_2503	-	hypothetical protein
2438	 34.30	-1	2615199..2615612	+	137	71278244	-	CPS_2504	-	acetyltransferase
2439	 33.33	-1	2615667..2616182	+	171	71281133	-	CPS_2505	-	ErfK/YbiS/YcfS/YnhG family protein
2440	 36.78	0	2616304..2616564	+	86	71279001	-	CPS_2506	-	putative lipoprotein
2441	 34.60	0	2616699..2616935	+	78	71279796	-	CPS_2507	-	putative lipoprotein
2442	 36.10	0	2617051..2617665	+	204	71278794	-	CPS_2508	-	amino acid transporter LysE
2443	 31.73	-1	2617774..2618271	+	165	71278576	-	CPS_2509	-	putative thiol:disulfide interchange protein
2444	 37.55	0	2618366..2618911	-	181	71282634	-	CPS_2510	-	TetR family transcriptional regulator
2445	 42.48	+1	2619010..2619468	+	152	71278076	-	CPS_2511	-	HPP family protein
2446	 43.78	+1	2619646..2619894	+	82	71280892	-	CPS_2512	-	hypothetical protein
2447	 32.03	-1	2620261..2620566	+	101	71281886	-	CPS_2513	-	hypothetical protein
2448	 36.45	0	2620666..2621691	+	341	71279790	-	CPS_2514	-	hypothetical protein
2449	 36.56	0	2621747..2621839	+	30	71282367	-	CPS_2515	-	hypothetical protein
2450	 31.11	-1	2621844..2622023	-	59	71279372	-	CPS_2516	-	hypothetical protein
2451	 38.61	0	2622117..2622533	+	138	71279930	-	CPS_2517	-	hypothetical protein
2452	 36.87	0	2622668..2623006	+	112	71279882	-	CPS_2518	-	hypothetical protein
2453	 37.89	0	2623480..2623764	+	94	71280318	-	CPS_2519	-	putative outer membrane lipoprotein
2454	 39.17	0	2624065..2624664	-	199	71280825	-	CPS_2520	-	short chain dehydrogenase
2455	 37.94	0	2624746..2625657	+	303	71281955	-	CPS_2521	-	LysR family transcriptional regulator
2456	 41.78	+1	2625901..2627250	+	449	71282527	pbuX	CPS_2522	-	xanthine permease
2457	 37.69	0	2627349..2628656	-	435	71278183	-	CPS_2523	-	sensor histidine kinase
2458	 36.65	0	2628646..2629368	-	240	71280127	-	CPS_2524	-	DNA-binding response regulator
2459	 36.41	0	2629445..2629801	-	118	71281607	-	CPS_2525	-	hypothetical protein
2460	 38.16	0	2629912..2632395	-	827	71278738	-	CPS_2526	-	putative permease
2461	 38.13	0	2632389..2633180	-	263	71278326	-	CPS_2527	-	ABC transporter, ATP-binding protein
2462	 41.25	0	2633468..2634313	+	281	71280142	-	CPS_2528	-	enoyl-CoA hydratase/isomerase family protein
2463	 36.79	0	2634310..2634714	+	134	71280932	-	CPS_2529	-	hypothetical protein
2464	 41.72	+1	2635616..2636521	-	301	71280356	-	CPS_2531	-	LysR family transcriptional regulator
2465	 37.94	0	2636881..2640813	-	1310	71282230	-	CPS_2532	-	hypothetical protein
2466	 37.60	0	2640810..2642639	-	609	71281704	-	CPS_2533	-	OMP85 family outer membrane protein
2467	 29.86	-2	2643065..2643208	-	47	71279456	-	CPS_2534	-	hypothetical protein
2468	 38.22	0	2643217..2644506	-	429	71280174	-	CPS_2535	-	hypothetical protein
2469	 41.19	0	2644718..2645035	+	105	71279448	-	CPS_2536	-	hypothetical protein
2470	 37.46	0	2645235..2645792	+	185	71278767	-	CPS_2537	-	hypothetical protein
2471	 37.22	0	2645901..2646260	+	119	71278110	-	CPS_2538	-	hypothetical protein
2472	 41.46	0	2646329..2647042	+	237	71281472	-	CPS_2539	-	ZIP zinc transporter family protein
2473	 39.76	0	2647102..2647599	+	165	71279606	-	CPS_2540	-	acetyltransferase
2474	 32.35	-1	2647880..2648185	+	101	71280725	-	CPS_2541	-	hypothetical protein
2475	 35.22	0	2648619..2648936	+	105	71280816	-	CPS_2542	-	putative lipoprotein
2476	 39.64	0	2648982..2649203	+	73	71279932	-	CPS_2543	-	putative lipoprotein
2477	 38.99	0	2649327..2649839	-	170	71282598	-	CPS_2544	-	putative cytochrome p460
2478	 35.71	0	2650358..2650483	-	41	71281777	-	CPS_2545	-	hypothetical protein
2479	 41.19	0	2650560..2651831	+	423	71281231	-	CPS_2546	-	O-acetylhomoserine/O-acetylserine sulfhydrylase
2480	 42.00	+1	2651916..2652734	+	272	71281024	-	CPS_2547	-	hypothetical protein
2481	 42.78	+1	2653034..2653414	+	126	71279783	-	CPS_2548	-	hypothetical protein
2482	 35.95	0	2653938..2654396	+	152	71279265	-	CPS_2549	-	hypothetical protein
2483	 35.74	0	2654431..2654763	+	110	71278431	-	CPS_2550	-	hypothetical protein
2484	 30.43	-2	2654828..2654965	+	45	71278205	-	CPS_2551	-	hypothetical protein
2485	 41.58	+1	2655147..2655437	+	96	71280880	-	CPS_2552	-	hypothetical protein
2486	 36.41	0	2655615..2656004	+	129	71280216	-	CPS_2553	-	hypothetical protein
2487	 41.63	+1	2656074..2657483	+	469	71282315	-	CPS_2554	-	M28 family peptidase
2488	 37.24	0	2657960..2658394	+	144	71282348	-	CPS_2555	-	acetyltransferase
2489	 37.83	0	2658566..2658832	+	88	71281646	-	CPS_2556	-	hypothetical protein
2490	 37.27	0	2659432..2659863	+	143	71278816	-	CPS_2557	-	putative heme-binding protein
2491	 39.90	0	2659969..2661111	+	380	71278138	-	CPS_2558	-	zinc carboxypeptidase family protein
2492	 39.67	0	2661277..2662806	+	509	71279032	-	CPS_2559	-	amino acid carrier protein
2493	 39.03	0	2662945..2663979	-	344	71280989	-	CPS_2560	-	AraC family transcriptional regulator
2494	 39.08	0	2664153..2664866	+	237	71278774	-	CPS_2561	-	putative lipoprotein
2495	 39.40	0	2664931..2666100	+	389	71278088	-	CPS_2562	-	RND family efflux transporter MFP subunit
2496	 38.76	0	2666097..2669156	+	1019	71278769	-	CPS_2563	-	AcrB/AcrD/AcrF family protein
2497	 37.58	0	2669454..2669783	+	109	71279536	-	CPS_2564	-	hypothetical protein
2498	 40.74	0	2669863..2670186	+	107	71279597	-	CPS_2565	-	hypothetical protein
2499	 35.87	0	2670395..2673112	+	905	71280286	-	CPS_2566	-	hypothetical protein
2500	 36.43	0	2673269..2673655	+	128	71281037	-	CPS_2567	-	hypothetical protein
2501	 41.57	+1	2673890..2674411	+	173	71282377	-	CPS_2568	-	hypothetical protein
2502	 37.50	0	2674402..2674521	+	39	71282225	-	CPS_2569	-	hypothetical protein
2503	 36.56	0	2674759..2674944	+	61	71281304	-	CPS_2570	-	putative lipoprotein
2504	 36.67	0	2674916..2675425	+	169	71281848	bar	CPS_2571	-	phosphinothricin N-acetyltransferase
2505	 30.30	-2	2675451..2675549	-	32	71282401	-	CPS_2572	-	hypothetical protein
2506	 40.83	0	2675852..2679067	+	1071	71277933	-	CPS_2573	-	amidohydrolase family protein
2507	 37.44	0	2679212..2679430	+	72	71278546	-	CPS_2574	-	hypothetical protein
2508	 36.04	0	2679634..2679966	+	110	71277826	-	CPS_2575	-	hypothetical protein
2509	 39.84	0	2680155..2682506	-	783	71278346	-	CPS_2576	-	TonB-dependent receptor
2510	 35.27	0	2682708..2683742	+	344	71278211	-	CPS_2577	-	AraC family transcriptional regulator
2511	 36.36	0	2683962..2684225	+	87	71281383	-	CPS_2578	-	hypothetical protein
2512	 34.63	0	2684488..2684718	+	76	71282144	-	CPS_2579	-	hypothetical protein
2513	 35.71	0	2684718..2685011	+	97	71278247	-	CPS_2580	-	hypothetical protein
2514	 38.33	0	2685177..2685896	+	239	71278907	minC	CPS_2581	-	septum site-determining protein MinC
2515	 40.49	0	2685925..2686734	+	269	71279322	minD	CPS_2582	-	septum site-determining protein MinD
2516	 34.77	0	2686736..2687014	+	92	71280034	minE	CPS_2583	-	cell division topological specificity factor MinE
2517	 40.34	0	2687126..2688139	-	337	71278316	ansA	CPS_2584	-	cytoplasmic asparaginase I
2518	 38.14	0	2688624..2690537	-	637	71278898	sppA	CPS_2585	-	signal peptide peptidase SppA, 67K type
2519	 38.05	0	2690762..2691460	+	232	71281062	-	CPS_2586	-	DoxD-like family protein
2520	 38.02	0	2691539..2692435	-	298	71278876	-	CPS_2587	-	membrane protein
2521	 25.81	-2	2692423..2692515	+	30	71282212	-	CPS_2588	-	hypothetical protein
2522	 40.82	0	2692628..2692774	-	48	71278182	-	CPS_2589	-	hypothetical protein
2523	 40.03	0	2692968..2693564	+	198	71280852	-	CPS_2590	-	nitroreductase family protein
2524	 39.90	0	2693676..2695076	-	466	71281666	asnC	CPS_2591	-	asparaginyl-tRNA synthetase
38.03	MEAN

3.50	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.