IslandPath Analysis: Colwellia psychrerythraea 34H



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 38.03   STD DEV: 3.50
Colwellia psychrerythraea 34H, complete genome - 1..5373180
4910 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2333	 35.85	0	2514898..2515692	+	264	71278334	-	CPS_2398	-	hypothetical protein
2334	 36.58	0	2515689..2516519	-	276	71278322	-	CPS_2399	-	ICE-like protease
2335	 36.22	0	2516575..2517129	-	184	71278742	-	CPS_2400	-	hypothetical protein
2336	 35.65	0	2517113..2517328	-	71	71279301	-	CPS_2401	-	hypothetical protein
2337	 36.81	0	2517783..2517926	+	47	71280006	-	CPS_2402	-	hypothetical protein
2338	 37.29	0	2518271..2518447	+	58	71278239	-	CPS_2403	-	hypothetical protein
2339	 40.74	0	2518511..2518699	+	62	71279903	-	CPS_2404	-	hypothetical protein
2340	 34.00	-1	2518707..2519006	+	99	71280075	-	CPS_2405	-	hypothetical protein
2341	 40.14	0	2519030..2519176	+	48	71280344	-	CPS_2406	-	hypothetical protein
2342	 35.85	0	2519228..2520301	+	357	71281127	-	CPS_2407	-	lipase family protein
2343	 35.29	0	2520332..2520484	+	50	71282020	-	CPS_2408	-	hypothetical protein
2344	 40.07	0	2521493..2521789	-	98	71279240	-	CPS_2410	-	ISCps2, transposase orfA
2345	 40.11	0	2523082..2523789	+	235	71281812	-	CPS_2411	-	hypothetical protein
2346	 38.10	0	2523900..2524130	+	76	71281592	-	CPS_2412	-	glutaredoxin family protein
2347	 35.94	0	2524573..2525532	+	319	71278319	-	CPS_2413	-	SecC motif-containing protein
2348	 37.37	0	2525634..2525732	+	32	71279413	-	CPS_2414	-	hypothetical protein
2349	 29.91	-2	2525851..2525967	+	38	71280087	-	CPS_2415	-	hypothetical protein
2350	 35.45	0	2525968..2526771	+	267	71280377	-	CPS_2416	-	DNA-binding protein
2351	 34.22	-1	2526811..2529057	+	748	71281456	-	CPS_2417	-	hypothetical protein
2352	 32.58	-1	2529059..2530927	+	622	71280433	-	CPS_2418	-	putative ATP-dependent DNA helicase
2353	 36.18	0	2531245..2532051	+	268	71281298	-	CPS_2419	-	hypothetical protein
2354	 36.47	0	2532141..2532587	+	148	71278075	-	CPS_2420	-	hypothetical protein
2355	 34.83	0	2532646..2533380	-	244	71279489	-	CPS_2421	-	hypothetical protein
2356	 40.19	0	2533395..2534021	-	208	71277846	-	CPS_2422	-	hypothetical protein
2357	 33.15	-1	2534309..2534848	+	179	71279615	-	CPS_2423	-	hypothetical protein
2358	 36.96	0	2535070..2536725	+	551	71279192	-	CPS_2424	-	radical SAM domain/B12 binding domain-containing protein
2359	 38.37	0	2536771..2538081	-	436	71281285	-	CPS_2425	-	DSBA-like thioredoxin domain-containing protein
2360	 26.84	-2	2538413..2538643	-	76	71280740	-	CPS_2426	-	hypothetical protein
2361	 40.00	0	2538540..2540204	+	554	71279771	-	CPS_2427	-	ABC transporter protein
2362	 39.07	0	2540197..2542254	+	685	71279281	-	CPS_2428	-	ABC transporter, ATP-binding/permease protein
2363	 36.73	0	2542247..2543572	+	441	71282458	-	CPS_2429	-	HlyD family type I secretion membrane fusion protein
2364	 41.82	+1	2543584..2554860	+	3758	71281743	-	CPS_2430	-	VBCS repeat-containing protein
2365	 42.11	+1	2554875..2555432	+	185	71278586	-	CPS_2431	-	hypothetical protein
2366	 37.81	0	2555486..2555932	+	148	71278266	-	CPS_2432	-	putative lipoprotein
2367	 38.86	0	2556309..2558282	+	657	71279664	-	CPS_2433	-	putative surface protein
2368	 36.54	0	2558514..2558825	+	103	71279317	-	CPS_2434	-	hypothetical protein
2369	 37.32	0	2558555..2558830	-	91	71281378	-	CPS_2435	-	hypothetical protein
2370	 39.05	0	2558954..2559583	-	209	71281991	-	CPS_2436	-	putative glutathione S-transferase
2371	 41.04	0	2559839..2560279	+	146	71279450	-	CPS_2437	-	putative lipoprotein
2372	 36.60	0	2560297..2560602	+	101	71282303	-	CPS_2438	-	putative lipoprotein
2373	 33.66	-1	2560605..2560913	+	102	71281637	-	CPS_2439	-	putative lipoprotein
2374	 38.97	0	2560985..2561854	-	289	71280887	rarD2	CPS_2440	-	rarD protein
2375	 42.05	+1	2562072..2563517	-	481	71280353	-	CPS_2441	-	catalase
2376	 37.60	0	2563682..2564173	-	163	71280697	-	CPS_2442	-	hypothetical protein
2377	 36.19	0	2564304..2564618	-	104	71279722	-	CPS_2443	-	putative lipoprotein
2378	 36.36	0	2564742..2565005	-	87	71279311	-	CPS_2444	-	hypothetical protein
2379	 35.56	0	2565211..2566602	-	463	71278951	-	CPS_2445	-	hypothetical protein
2380	 40.99	0	2566860..2567603	+	247	71278091	-	CPS_2446	-	hypothetical protein
2381	 33.33	-1	2567583..2567759	-	58	71278864	-	CPS_2447	-	hypothetical protein
2382	 36.91	0	2567674..2568288	-	204	71282013	-	CPS_2448	-	TetR family transcriptional regulator
2383	 41.09	0	2568517..2570541	+	674	71282132	fadH2	CPS_2449	-	2,4-dienoyl-CoA reductase
2384	 27.27	-2	2570589..2570687	+	32	71280922	-	CPS_2450	-	hypothetical protein
2385	 33.33	-1	2570703..2570852	+	49	71279134	-	CPS_2451	-	hypothetical protein
2386	 37.38	0	2570901..2571815	-	304	71279833	-	CPS_2452	-	putative permease
2387	 39.18	0	2571949..2572239	+	96	71279945	-	CPS_2453	-	ArsR family transcriptional regulator
2388	 37.90	0	2572199..2575327	+	1042	71280181	helD	CPS_2454	-	helicase IV
2389	 38.03	0	2575403..2575636	+	77	71281248	-	CPS_2455	-	hypothetical protein
2390	 41.67	+1	2575801..2577168	+	455	71280498	-	CPS_2456	-	putative GTP-binding protein HflX
2391	 33.33	-1	2577192..2577767	+	191	71281013	-	CPS_2457	-	hypothetical protein
2392	 40.57	0	2577874..2578191	+	105	71281684	-	CPS_2458	-	hypothetical protein
2393	 31.78	-1	2578381..2578830	-	149	71282048	-	CPS_2459	-	hypothetical protein
2394	 38.50	0	2579182..2580207	+	341	71278960	-	CPS_2460	-	putative lipoprotein
2395	 39.82	0	2580354..2581139	-	261	71279539	-	CPS_2461	-	hypothetical protein
2396	 34.04	-1	2581409..2581690	+	93	71280038	-	CPS_2462	-	hypothetical protein
2397	 31.88	-1	2581749..2581955	+	68	71279342	-	CPS_2463	-	hypothetical protein
2398	 34.15	-1	2582100..2582591	+	163	71280519	-	CPS_2464	-	acetyltransferase
2399	 37.43	0	2582696..2583061	+	121	71278921	-	CPS_2465	-	hypothetical protein
2400	 37.22	0	2583127..2583306	+	59	71279000	-	CPS_2466	-	hypothetical protein
2401	 36.60	0	2583754..2583906	+	50	71282488	-	CPS_2467	-	hypothetical protein
2402	 36.56	0	2583948..2584598	+	216	71278261	-	CPS_2468	-	nitroreductase family protein
2403	 35.90	0	2584611..2585156	-	181	71281759	folE1	CPS_2469	-	GTP cyclohydrolase I
2404	 34.82	0	2585297..2586034	-	245	71280273	-	CPS_2470	-	solute-binding family 1 protein
2405	 41.67	+1	2586133..2586612	-	159	71279688	-	CPS_2471	-	L-serine dehydratase 1, truncated
2406	 40.85	0	2586764..2587840	-	358	71279008	-	CPS_2472	-	porin
2407	 41.15	0	2588125..2588853	+	242	71277942	-	CPS_2473	-	DNA-binding response regulator
2408	 38.35	0	2588850..2589647	+	265	71281594	-	CPS_2474	-	solute-binding family 1 protein
2409	 41.32	0	2589644..2591998	+	784	71281799	-	CPS_2475	-	sensor histidine kinase/response regulator
2410	 41.42	0	2592360..2593868	+	502	71281124	nhaC1	CPS_2476	-	Na+/H+ antiporter NhaC
2411	 46.41	+2	2594017..2595270	+	417	71279550	glyA2	CPS_2477	-	serine hydroxymethyltransferase
2412	 47.96	+2	2595357..2596607	+	416	71281326	soxB1	CPS_2478	-	sarcosine oxidase, beta subunit
2413	 48.67	+2	2596620..2596919	+	99	71277842	soxD1	CPS_2479	-	sarcosine oxidase, delta subunit
2414	 47.78	+2	2596916..2599939	+	1007	71282317	soxA1	CPS_2480	-	sarcosine oxidase, alpha subunit
2415	 47.74	+2	2599932..2600528	+	198	71280415	soxG1	CPS_2481	-	sarcosine oxidase, gamma subunit
2416	 45.05	+2	2600701..2601579	+	292	71279439	purU1	CPS_2482	-	formyltetrahydrofolate deformylase
2417	 41.71	+1	2601743..2602339	+	198	71279992	-	CPS_2483	-	DNA-binding protein
2418	 37.35	0	2602353..2604068	-	571	71278358	-	CPS_2484	-	GGDEF domain-containing protein
2419	 30.73	-2	2604576..2604959	+	127	71282109	-	CPS_2485	-	hypothetical protein
2420	 29.60	-2	2605069..2605416	+	115	71281753	-	CPS_2486	-	hypothetical protein
2421	 38.51	0	2605564..2606046	+	160	71279022	-	CPS_2487	-	acetyltransferase
2422	 35.29	0	2606307..2606612	+	101	71278633	-	CPS_2488	-	hypothetical protein
2423	 37.09	0	2606853..2607278	+	141	71279691	-	CPS_2489	-	acetyltransferase
2424	 33.58	-1	2607361..2607759	+	132	71279041	-	CPS_2490	-	hypothetical protein
2425	 28.27	-2	2607876..2608349	+	157	71281390	-	CPS_2491	-	hypothetical protein
2426	 32.44	-1	2608449..2609009	+	186	71280705	-	CPS_2492	-	hypothetical protein
2427	 37.25	0	2608992..2609093	-	33	71281988	-	CPS_2493	-	hypothetical protein
2428	 30.75	-2	2609134..2609520	+	128	71281292	-	CPS_2494	-	hypothetical protein
2429	 35.12	0	2609672..2610286	+	204	71278435	-	CPS_2495	-	putative glutathione S-transferase
2430	 31.17	-1	2610373..2610741	+	122	71281447	-	CPS_2496	-	hypothetical protein
2431	 37.24	0	2610776..2611390	+	204	71280064	-	CPS_2497	-	hypothetical protein
2432	 32.03	-1	2611528..2611833	+	101	71280333	-	CPS_2498	-	hypothetical protein
38.03	MEAN

3.50	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.