version 1.0
Colwellia psychrerythraea 34H, complete genome - 1..5373180 4910 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1924 39.75 0 2043891..2045105 + 404 71279024 deoB CPS_1976 - phosphopentomutase 1925 39.91 0 2045268..2047577 + 769 71277841 - CPS_1977 - TonB-dependent receptor 1926 39.15 0 2047665..2048369 - 234 71282054 deoD CPS_1978 - purine nucleoside phosphorylase 1927 39.96 0 2048617..2049612 - 331 71282452 add2 CPS_1979 - adenosine deaminase 1928 36.75 0 2049729..2050634 - 301 71278943 - CPS_1980 - endonuclease/exonuclease/phosphatase family protein 1929 35.67 0 2050807..2051661 - 284 71279197 - CPS_1981 - hypothetical protein 1930 36.89 0 2052252..2053094 + 280 71279781 - CPS_1982 - 2OG-Fe(II) oxygenase family oxidoreductase 1931 42.01 +1 2053311..2054036 + 241 71280585 - CPS_1983 - hypothetical protein 1932 40.27 0 2054036..2054785 + 249 71281703 - CPS_1984 - hypothetical protein 1933 39.22 0 2054772..2055740 + 322 71281883 - CPS_1985 - allophanate hydrolase domain-containing protein 1934 38.07 0 2055788..2056738 - 316 71282492 - CPS_1986 - universal stress protein UspE 1935 35.97 0 2056884..2057603 - 239 71278952 fnr CPS_1987 - fumarate/nitrate reduction transcriptional regulator 1936 40.53 0 2057657..2058406 - 249 71279015 - CPS_1988 - hypothetical protein 1937 33.33 -1 2058403..2058615 - 70 71279698 - CPS_1989 - cytochrome oxidase maturation protein, cbb3-type 1938 38.90 0 2058718..2061180 - 820 71279318 - CPS_1990 - copper-translocating P-type ATPase 1939 35.56 0 2061281..2061775 - 164 71281422 - CPS_1991 - hypothetical protein 1940 42.49 +1 2061984..2062955 - 323 71280734 ccoP CPS_1992 - cytochrome c oxidase, cbb3-type, subunit III 1941 36.71 0 2062948..2063154 - 68 71280450 ccoQ CPS_1993 - cytochrome c oxidase, cbb3-type, CcoQ subunit 1942 41.40 0 2063165..2063809 - 214 71281529 ccoO CPS_1994 - cytochrome c oxidase, cbb3-type, subunit II 1943 40.84 0 2063820..2065244 - 474 71278226 ccoN CPS_1995 - cytochrome c oxidase, cbb3-type, subunit I 1944 38.68 0 2065676..2066461 - 261 71280144 - CPS_1996 - Crp/FNR family transcriptional regulator 1945 37.55 0 2066659..2067132 + 157 71279424 - CPS_1997 - putative lipoprotein 1946 38.52 0 2067244..2068902 - 552 71279182 - CPS_1998 - putative membrane-bound lytic murein transglycosylase 1947 39.35 0 2069152..2069949 - 265 71279881 - CPS_1999 - metallo-beta-lactamase family protein 1948 39.28 0 2070163..2070936 + 257 71277808 - CPS_2000 - hypothetical protein 1949 39.79 0 2071011..2071769 + 252 71278496 - CPS_2001 - hypothetical protein 1950 39.48 0 2071854..2072618 - 254 71280901 - CPS_2002 - hypothetical protein 1951 40.80 0 2072725..2074332 - 535 71282520 - CPS_2003 - choline/carnitine/betaine transport family protein 1952 40.04 0 2075060..2076430 + 456 71280627 lysC CPS_2004 - aspartate kinase III 1953 35.88 0 2076582..2077013 - 143 71281121 - CPS_2005 - MarR family transcriptional regulator 1954 32.71 -1 2077017..2077499 - 160 71278506 - CPS_2006 - glutathione peroxidase family protein 1955 43.17 +1 2077697..2078560 + 287 71279377 - CPS_2007 - 3-hydroxyisobutyrate dehydrogenase family protein 1956 39.55 0 2078659..2079462 + 267 71279832 - CPS_2008 - putative lipoprotein 1957 40.84 0 2079740..2081191 - 483 71278242 - CPS_2009 - anion transporter 1958 38.60 0 2081714..2082757 + 347 71278934 - CPS_2010 - porin 1959 39.05 0 2082829..2082933 + 34 71280840 - CPS_2011 - hypothetical protein 1960 37.47 0 2083066..2084901 + 611 71281534 dctB CPS_2012 - C4-dicarboxylate transport sensor protein 1961 37.81 0 2085077..2086438 + 453 71279777 dctD CPS_2013 - C4-dicarboxylate transport transcriptional regulatory protein 1962 40.10 0 2086576..2088039 - 487 71280482 sbcB CPS_2014 - exonuclease I 1963 35.81 0 2088172..2089344 + 390 71279352 - CPS_2015 - phage integrase family site specific recombinase 1964 31.35 -1 2089363..2090169 + 268 71282027 - CPS_2016 - hypothetical protein 1965 39.08 0 2090244..2090504 + 86 71278520 - CPS_2017 - hypothetical protein 1966 30.55 -2 2090942..2091766 + 274 71279581 - CPS_2018 - hypothetical protein 1967 37.92 0 2091812..2092138 + 108 71279087 - CPS_2019 - hypothetical protein 1968 31.40 -1 2092195..2092401 - 68 71278626 - CPS_2020 - hypothetical protein 1969 36.07 0 2092280..2092864 + 194 71277783 - CPS_2021 - hypothetical protein 1970 40.60 0 2094534..2096006 + 490 71279853 gabD1 CPS_2023 - succinate-semialdehyde dehydrogenase 1971 39.25 0 2097533..2098885 + 450 71279589 - CPS_2025 - aminotransferase, class III 1972 34.55 0 2098991..2099155 + 54 71279067 - CPS_2026 - hypothetical protein 1973 36.21 0 2099122..2099295 + 57 71280668 - CPS_2027 - hypothetical protein 1974 36.60 0 2099453..2100157 - 234 71280195 - CPS_2028 - hypothetical protein 1975 38.30 0 2100262..2101590 - 442 71281795 - CPS_2029 - amino acid permease family protein 1976 33.07 -1 2101604..2102350 - 248 71282284 - CPS_2030 - carbon-nitrogen family hydrolase 1977 35.51 0 2102532..2103728 + 398 71278312 - CPS_2031 - hypothetical protein 1978 33.93 -1 2103749..2105578 + 609 71278858 - CPS_2032 - sensor histidine kinase 1979 40.99 0 2105571..2106197 + 208 71282148 - CPS_2033 - LuxR family DNA-binding response regulator 1980 36.56 0 2106244..2106522 + 92 71277748 - CPS_2034 - hypothetical protein 1981 36.28 0 2106780..2108543 - 587 71281059 - CPS_2035 - oxidoreductase, FAD-binding/iron-sulfur cluster binding protein 1982 38.48 0 2108744..2109772 - 342 71280029 potD CPS_2036 - spermidine/putrescine ABC transporter, periplasmic spermidine/putrescine-binding protein 1983 42.10 +1 2109835..2110644 - 269 71280799 potC CPS_2037 - spermidine/putrescine ABC transporter, permease protein PotC 1984 41.64 +1 2110641..2111519 - 292 71278832 potB CPS_2038 - spermidine/putrescine ABC transporter, permease protein PotB 1985 41.83 +1 2111516..2112586 - 356 71278792 potA CPS_2039 - spermidine/putrescine ABC transporter, ATP-binding protein 1986 45.97 +2 2113333..2114772 - 479 71279441 - CPS_2040 - amino acid permease family protein 1987 38.65 0 2114931..2115626 - 231 71280145 - CPS_2041 - hypothetical protein 1988 35.18 0 2116267..2116863 + 198 71278209 - CPS_2042 - acetyltransferase 1989 38.61 0 2116969..2118162 - 397 71280823 - CPS_2043 - major facilitator family transporter 1990 39.10 0 2118199..2119377 - 392 71279817 argE2 CPS_2044 - acetylornithine deacetylase 1991 45.23 +2 2119377..2120057 - 226 71280590 - CPS_2045 - hypothetical protein 1992 37.23 0 2120101..2120511 - 136 71278660 - CPS_2046 - L-PSP family endoribonuclease 1993 39.22 0 2120511..2122040 - 509 71281564 - CPS_2047 - 4-hydroxyphenylacetate-3-hydroxylase family protein 1994 43.81 +1 2122623..2123882 + 419 71280483 - CPS_2048 - hypothetical protein 1995 37.44 0 2124074..2125435 - 453 71281004 - CPS_2049 - hypothetical protein 1996 36.97 0 2125636..2127750 - 704 71279453 - CPS_2050 - methyl-accepting chemotaxis protein 1997 39.86 0 2128013..2129254 - 413 71280648 - CPS_2051 - NADP-dependent malic enzyme, truncated 1998 37.86 0 2129725..2131182 - 485 71281136 aspA CPS_2052 - aspartate ammonia-lyase 1999 39.67 0 2131525..2133024 - 499 71279196 - CPS_2053 - aldehyde dehydrogenase family protein 2000 38.82 0 2133123..2134526 - 467 71280045 - CPS_2054 - hypothetical protein 2001 34.76 0 2134757..2135665 + 302 71279583 - CPS_2055 - LysR family transcriptional regulator 2002 37.28 0 2135788..2136294 + 168 71280406 fdhG1 CPS_2056 - formate dehydrogenase, gamma subunit 2003 41.62 +1 2136296..2137900 + 534 71280105 fdhB1 CPS_2057 - formate dehydrogenase, beta subunit 2004 41.84 +1 2137903..2140806 + 967 71278992 fdhA1 CPS_2058 - formate dehydrogenase, alpha subunit 2005 35.49 0 2140820..2141653 + 277 71278750 fdhD1 CPS_2059 - formate dehydrogenase accessory protein FdhD 2006 32.08 -1 2141687..2141926 + 79 71278217 - CPS_2060 - hypothetical protein 2007 38.85 0 2142087..2143427 + 446 71279725 hisD CPS_2061 - histidinol dehydrogenase 2008 34.51 -1 2143684..2144280 - 198 71279006 - CPS_2062 - phage integrase family site specific recombinase 2009 40.94 0 2144507..2144782 - 91 71278109 hupB2 CPS_2063 - HU family DNA-binding protein 2010 39.18 0 2144863..2145033 - 56 71278011 - CPS_2064 - hypothetical protein 2011 41.90 +1 2145210..2145629 + 139 71281894 - CPS_2065 - hypothetical protein 2012 41.35 0 2145781..2146341 + 186 71282441 - CPS_2066 - hypothetical protein 2013 40.83 0 2146504..2146623 + 39 71277987 - CPS_2067 - hypothetical protein 2014 39.34 0 2146653..2147201 - 182 71279778 - CPS_2068 - hypothetical protein 2015 31.43 -1 2147963..2148382 + 139 71281410 - CPS_2070 - hypothetical protein 2016 40.54 0 2148782..2149669 - 295 71282606 - CPS_2071 - hypothetical protein 2017 39.81 0 2149975..2150082 - 35 71281907 - CPS_2072 - hypothetical protein 2018 40.86 0 2150020..2150112 + 30 71281503 - CPS_2073 - hypothetical protein 2019 41.09 0 2150151..2151452 - 433 71278779 - CPS_2074 - Xaa-Pro dipeptidase 2020 36.52 0 2151672..2153429 - 585 71278531 - CPS_2075 - putative lipoprotein 2021 41.67 +1 2153772..2153867 + 31 71281226 - CPS_2076 - hypothetical protein 2022 39.39 0 2154117..2154974 + 285 71280558 - CPS_2077 - hypothetical protein 2023 38.76 0 2155093..2156823 + 576 71282638 - CPS_2078 - hypothetical protein 38.03 MEAN 3.50 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0