version 1.0
Colwellia psychrerythraea 34H, complete genome - 1..5373180 4910 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1888 36.85 0 2002702..2003895 + 397 71280261 - CPS_1940 - response regulator 1889 34.31 -1 2003968..2004687 - 239 71279548 - CPS_1941 - cytochrome b561 family protein 1890 33.66 -1 2004716..2005018 - 100 71281342 - CPS_1942 - hypothetical protein 1891 37.76 0 2005011..2008085 - 1024 71279822 czcA CPS_1943 - cation efflux system protein CzcA 1892 32.68 -1 2008086..2009162 - 358 71279437 - CPS_1944 - hypothetical protein 1893 35.77 0 2009323..2009814 + 163 71278440 - CPS_1945 - hypothetical protein 1894 39.05 0 2009976..2010080 + 34 71278015 - CPS_1946 - hypothetical protein 1895 39.73 0 2010414..2011226 + 270 71279720 - CPS_1947 - enoyl-CoA hydratase/isomerase family protein 1896 39.47 0 2011228..2011683 + 151 71280381 - CPS_1948 - CoA-binding domain-containing protein 1897 37.20 0 2011741..2013705 - 654 71277945 - CPS_1949 - sensory box protein 1898 35.10 0 2014206..2014601 - 131 71281087 - CPS_1950 - CBS domain-containing protein 1899 41.31 0 2014598..2014948 - 116 71281769 - CPS_1951 - hypothetical protein 1900 39.07 0 2014983..2015819 - 278 71280049 - CPS_1952 - hypothetical protein 1901 39.84 0 2015819..2016556 - 245 71280726 - CPS_1953 - hypothetical protein 1902 38.49 0 2016967..2018169 + 400 71278975 trpB1 CPS_1954 - tryptophan synthase subunit beta 1903 34.88 0 2018223..2018609 - 128 71279657 - CPS_1955 - MerR family transcriptional regulator 1904 41.19 0 2018687..2019310 + 207 71277847 - CPS_1956 - putative RND efflux system protein 1905 41.35 0 2019519..2020853 + 444 71278364 - CPS_1957 - putative RND efflux system protein 1906 41.10 0 2020864..2021880 + 338 71279753 - CPS_1958 - putative RND efflux system protein, MFP subunit 1907 42.19 +1 2021891..2025007 + 1038 71280615 - CPS_1959 - putative RND efflux system protein 1908 39.02 0 2025155..2026192 - 345 71281154 pldA CPS_1960 - phospholipase A1 1909 41.80 +1 2026531..2029647 + 1038 71281393 - CPS_1961 - AcrB/AcrD/AcrF family protein 1910 40.95 0 2029677..2030858 + 393 71278003 - CPS_1962 - RND family efflux transporter MFP subunit 1911 38.21 0 2031023..2032456 - 477 71278349 - CPS_1963 - alkaline phosphatase 1912 38.82 0 2032490..2033674 - 394 71280776 - CPS_1964 - endonuclease/exonuclease/phosphatase family protein 1913 37.44 0 2033700..2034332 - 210 71282421 - CPS_1965 - TetR family transcriptional regulator 1914 27.62 -2 2034624..2034728 + 34 71281797 - CPS_1966 - hypothetical protein 1915 22.50 -2 2034878..2034997 - 39 71278499 - CPS_1967 - hypothetical protein 1916 38.50 0 2035039..2038194 + 1051 71277990 - CPS_1968 - putative OmpA family protein 1917 42.14 +1 2038393..2038812 + 139 71279710 cdd CPS_1969 - cytidine deaminase 1918 42.14 +1 2038824..2040140 + 438 71280126 deoA CPS_1970 - thymidine phosphorylase 1919 38.86 0 2040196..2040774 - 192 71279543 tdk CPS_1971 - thymidine kinase 1920 40.18 0 2040907..2041680 - 257 71280606 deoC CPS_1972 - deoxyribose-phosphate aldolase 1921 40.00 0 2041734..2042978 - 414 71281122 - CPS_1973 - NupC family nucleoside transporter 1922 35.64 0 2043007..2043657 - 216 71280588 udk CPS_1974 - uridine kinase 1923 27.91 -2 2043644..2043772 - 42 71279826 - CPS_1975 - hypothetical protein 1924 39.75 0 2043891..2045105 + 404 71279024 deoB CPS_1976 - phosphopentomutase 1925 39.91 0 2045268..2047577 + 769 71277841 - CPS_1977 - TonB-dependent receptor 1926 39.15 0 2047665..2048369 - 234 71282054 deoD CPS_1978 - purine nucleoside phosphorylase 1927 39.96 0 2048617..2049612 - 331 71282452 add2 CPS_1979 - adenosine deaminase 1928 36.75 0 2049729..2050634 - 301 71278943 - CPS_1980 - endonuclease/exonuclease/phosphatase family protein 1929 35.67 0 2050807..2051661 - 284 71279197 - CPS_1981 - hypothetical protein 1930 36.89 0 2052252..2053094 + 280 71279781 - CPS_1982 - 2OG-Fe(II) oxygenase family oxidoreductase 1931 42.01 +1 2053311..2054036 + 241 71280585 - CPS_1983 - hypothetical protein 1932 40.27 0 2054036..2054785 + 249 71281703 - CPS_1984 - hypothetical protein 1933 39.22 0 2054772..2055740 + 322 71281883 - CPS_1985 - allophanate hydrolase domain-containing protein 1934 38.07 0 2055788..2056738 - 316 71282492 - CPS_1986 - universal stress protein UspE 1935 35.97 0 2056884..2057603 - 239 71278952 fnr CPS_1987 - fumarate/nitrate reduction transcriptional regulator 1936 40.53 0 2057657..2058406 - 249 71279015 - CPS_1988 - hypothetical protein 1937 33.33 -1 2058403..2058615 - 70 71279698 - CPS_1989 - cytochrome oxidase maturation protein, cbb3-type 1938 38.90 0 2058718..2061180 - 820 71279318 - CPS_1990 - copper-translocating P-type ATPase 1939 35.56 0 2061281..2061775 - 164 71281422 - CPS_1991 - hypothetical protein 1940 42.49 +1 2061984..2062955 - 323 71280734 ccoP CPS_1992 - cytochrome c oxidase, cbb3-type, subunit III 1941 36.71 0 2062948..2063154 - 68 71280450 ccoQ CPS_1993 - cytochrome c oxidase, cbb3-type, CcoQ subunit 1942 41.40 0 2063165..2063809 - 214 71281529 ccoO CPS_1994 - cytochrome c oxidase, cbb3-type, subunit II 1943 40.84 0 2063820..2065244 - 474 71278226 ccoN CPS_1995 - cytochrome c oxidase, cbb3-type, subunit I 1944 38.68 0 2065676..2066461 - 261 71280144 - CPS_1996 - Crp/FNR family transcriptional regulator 1945 37.55 0 2066659..2067132 + 157 71279424 - CPS_1997 - putative lipoprotein 1946 38.52 0 2067244..2068902 - 552 71279182 - CPS_1998 - putative membrane-bound lytic murein transglycosylase 1947 39.35 0 2069152..2069949 - 265 71279881 - CPS_1999 - metallo-beta-lactamase family protein 1948 39.28 0 2070163..2070936 + 257 71277808 - CPS_2000 - hypothetical protein 1949 39.79 0 2071011..2071769 + 252 71278496 - CPS_2001 - hypothetical protein 1950 39.48 0 2071854..2072618 - 254 71280901 - CPS_2002 - hypothetical protein 1951 40.80 0 2072725..2074332 - 535 71282520 - CPS_2003 - choline/carnitine/betaine transport family protein 1952 40.04 0 2075060..2076430 + 456 71280627 lysC CPS_2004 - aspartate kinase III 1953 35.88 0 2076582..2077013 - 143 71281121 - CPS_2005 - MarR family transcriptional regulator 1954 32.71 -1 2077017..2077499 - 160 71278506 - CPS_2006 - glutathione peroxidase family protein 1955 43.17 +1 2077697..2078560 + 287 71279377 - CPS_2007 - 3-hydroxyisobutyrate dehydrogenase family protein 1956 39.55 0 2078659..2079462 + 267 71279832 - CPS_2008 - putative lipoprotein 1957 40.84 0 2079740..2081191 - 483 71278242 - CPS_2009 - anion transporter 1958 38.60 0 2081714..2082757 + 347 71278934 - CPS_2010 - porin 1959 39.05 0 2082829..2082933 + 34 71280840 - CPS_2011 - hypothetical protein 1960 37.47 0 2083066..2084901 + 611 71281534 dctB CPS_2012 - C4-dicarboxylate transport sensor protein 1961 37.81 0 2085077..2086438 + 453 71279777 dctD CPS_2013 - C4-dicarboxylate transport transcriptional regulatory protein 1962 40.10 0 2086576..2088039 - 487 71280482 sbcB CPS_2014 - exonuclease I 1963 35.81 0 2088172..2089344 + 390 71279352 - CPS_2015 - phage integrase family site specific recombinase 1964 31.35 -1 2089363..2090169 + 268 71282027 - CPS_2016 - hypothetical protein 1965 39.08 0 2090244..2090504 + 86 71278520 - CPS_2017 - hypothetical protein 1966 30.55 -2 2090942..2091766 + 274 71279581 - CPS_2018 - hypothetical protein 1967 37.92 0 2091812..2092138 + 108 71279087 - CPS_2019 - hypothetical protein 1968 31.40 -1 2092195..2092401 - 68 71278626 - CPS_2020 - hypothetical protein 1969 36.07 0 2092280..2092864 + 194 71277783 - CPS_2021 - hypothetical protein 1970 40.60 0 2094534..2096006 + 490 71279853 gabD1 CPS_2023 - succinate-semialdehyde dehydrogenase 1971 39.25 0 2097533..2098885 + 450 71279589 - CPS_2025 - aminotransferase, class III 1972 34.55 0 2098991..2099155 + 54 71279067 - CPS_2026 - hypothetical protein 1973 36.21 0 2099122..2099295 + 57 71280668 - CPS_2027 - hypothetical protein 1974 36.60 0 2099453..2100157 - 234 71280195 - CPS_2028 - hypothetical protein 1975 38.30 0 2100262..2101590 - 442 71281795 - CPS_2029 - amino acid permease family protein 1976 33.07 -1 2101604..2102350 - 248 71282284 - CPS_2030 - carbon-nitrogen family hydrolase 1977 35.51 0 2102532..2103728 + 398 71278312 - CPS_2031 - hypothetical protein 1978 33.93 -1 2103749..2105578 + 609 71278858 - CPS_2032 - sensor histidine kinase 1979 40.99 0 2105571..2106197 + 208 71282148 - CPS_2033 - LuxR family DNA-binding response regulator 1980 36.56 0 2106244..2106522 + 92 71277748 - CPS_2034 - hypothetical protein 1981 36.28 0 2106780..2108543 - 587 71281059 - CPS_2035 - oxidoreductase, FAD-binding/iron-sulfur cluster binding protein 1982 38.48 0 2108744..2109772 - 342 71280029 potD CPS_2036 - spermidine/putrescine ABC transporter, periplasmic spermidine/putrescine-binding protein 1983 42.10 +1 2109835..2110644 - 269 71280799 potC CPS_2037 - spermidine/putrescine ABC transporter, permease protein PotC 1984 41.64 +1 2110641..2111519 - 292 71278832 potB CPS_2038 - spermidine/putrescine ABC transporter, permease protein PotB 1985 41.83 +1 2111516..2112586 - 356 71278792 potA CPS_2039 - spermidine/putrescine ABC transporter, ATP-binding protein 1986 45.97 +2 2113333..2114772 - 479 71279441 - CPS_2040 - amino acid permease family protein 1987 38.65 0 2114931..2115626 - 231 71280145 - CPS_2041 - hypothetical protein 38.03 MEAN 3.50 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.