IslandPath Analysis: Corynebacterium glutamicum ATCC 13032



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 54.31   STD DEV: 3.83
Corynebacterium glutamicum ATCC 13032, complete genome - 1..3309401
2993 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
915	 59.07	+1	1010201..1011793	+	530	19552179	-	NCgl0915	-	ABC-type transporter, ATPase component and permease component
916	 54.15	0	1011794..1013767	-	657	19552180	-	NCgl0916	-	gamma-glutamyltranspeptidase
917	 51.19	0	1014016..1014267	+	83	19552181	-	NCgl0917	-	hypothetical protein
918	 55.63	0	1014340..1014765	-	141	19552182	-	NCgl0918	-	hypothetical protein
919	 59.35	+1	1015142..1015852	-	236	19552183	-	NCgl0919	-	transposase
920	 47.04	-1	1015652..1016563	+	303	23308815	-	NCgl0920	-	hypothetical protein
921	 42.58	-2	1016557..1017021	+	154	19552184	-	NCgl0921	-	hypothetical protein
922	 44.17	-2	1017271..1017870	-	199	19552186	-	NCgl0922	-	hypothetical protein
923	 55.05	0	1018416..1019069	+	217	19552187	-	NCgl0923	-	transcriptional regulator
924	 57.31	0	1019075..1022719	+	1214	19552188	-	NCgl0924	-	transcription-repair coupling factor
925	 53.32	0	1022696..1024666	-	656	19552189	-	NCgl0925	-	ABC-type transporter, ATP-binding component
926	 54.44	0	1024663..1026396	-	577	19552190	-	NCgl0926	-	ABC-type transporter, ATPase component
927	 54.74	0	1026502..1028916	-	804	19552191	-	NCgl0927	-	hypothetical protein
928	 52.46	0	1029003..1030283	-	426	19552192	-	NCgl0928	-	hypothetical protein
929	 52.92	0	1030366..1031871	-	501	19552193	-	NCgl0929	-	amino acid permease
930	 51.17	0	1031972..1032184	+	70	19552194	-	NCgl0930	-	hypothetical protein
931	 53.57	0	1032196..1032783	+	195	19552195	-	NCgl0931	-	hypothetical protein
932	 55.65	0	1032757..1033128	-	123	19552196	-	NCgl0932	-	hypothetical protein
933	 55.38	0	1033266..1033646	-	126	19552197	-	NCgl0933	-	hypothetical protein
934	 52.81	0	1033978..1034742	+	254	19552198	-	NCgl0934	-	hypothetical protein
935	 58.37	+1	1034949..1036226	+	425	19552199	eno	NCgl0935	-	phosphopyruvate hydratase
936	 51.93	0	1036316..1036858	+	180	19552200	-	NCgl0936	-	hypothetical protein
937	 57.66	0	1036894..1037448	+	184	19552201	-	NCgl0937	-	hypothetical protein
938	 54.66	0	1037448..1038413	+	321	19552202	-	NCgl0938	-	exopolyphosphatase
939	 55.41	0	1038718..1039650	-	310	19552203	-	NCgl0939	-	threonine dehydratase
940	 48.99	-1	1039783..1039980	+	65	19552205	-	NCgl0940	-	hypothetical protein
941	 53.45	0	1039996..1040328	+	110	19552206	-	NCgl0941	-	pyrimidine reductase
942	 47.40	-1	1040494..1040685	+	63	19552207	-	NCgl0942	-	putative stress-responsive transcriptional regulator
943	 58.23	+1	1040925..1041920	+	331	19552208	-	NCgl0943	-	AraC-type DNA-binding domain-containing protein
944	 53.54	0	1041985..1042845	+	286	19552209	-	NCgl0944	-	hypothetical protein
945	 50.55	0	1043295..1043747	-	150	19552210	-	NCgl0945	-	hypothetical protein
946	 55.62	0	1043771..1044295	-	174	19552211	greA	NCgl0946	-	transcription elongation factor GreA
947	 54.53	0	1044474..1044959	-	161	19552212	-	NCgl0947	-	hypothetical protein
948	 53.65	0	1045158..1046033	+	291	23308816	-	NCgl0948	-	hypothetical protein
949	 53.58	0	1046073..1046393	+	106	19552214	-	NCgl0949	-	hypothetical protein
950	 56.13	0	1046610..1047710	+	366	19552215	-	NCgl0950	-	phospho-2-dehydro-3-deoxyheptonate aldolase
951	 54.42	0	1047827..1048504	+	225	19552216	-	NCgl0951	-	undecaprenyl pyrophosphate synthase
952	 55.17	0	1048525..1049046	+	173	19552217	-	NCgl0952	-	hypothetical protein
953	 55.35	0	1049424..1050395	-	323	19552218	-	NCgl0953	-	pantothenate kinase
954	 53.64	0	1050624..1051928	+	434	19552219	glyA	NCgl0954	-	serine hydroxymethyltransferase
955	 53.34	0	1052000..1053883	+	627	19552220	-	NCgl0955	-	anthranilate/para-aminobenzoate synthase component I
956	 55.37	0	1053880..1054605	+	241	19552221	-	NCgl0956	-	hypothetical protein
957	 55.81	0	1054637..1055032	-	131	19552222	-	NCgl0957	-	hypothetical protein
958	 54.81	0	1055051..1055725	+	224	19552223	-	NCgl0958	-	hypothetical protein
959	 53.89	0	1055783..1056322	+	179	19552224	-	NCgl0959	-	sortase or related acyltransferase
960	 52.72	0	1056319..1057200	-	293	19552225	-	NCgl0960	-	allophanate hydrolase subunit 2
961	 54.59	0	1057197..1057850	-	217	19552226	-	NCgl0961	-	allophanate hydrolase subunit 1
962	 60.08	+1	1057840..1058598	-	252	19552227	-	NCgl0962	-	hypothetical protein
963	 56.75	0	1058621..1059931	-	436	19552228	-	NCgl0963	-	hypothetical protein
964	 57.59	0	1059360..1059965	+	201	23308817	-	NCgl0964	-	hypothetical protein
965	 51.22	0	1060142..1060795	+	217	19552229	-	NCgl0965	-	gntR family transcriptional regulator
966	 54.62	0	1060905..1062149	+	414	19552230	-	NCgl0966	-	hypothetical protein
967	 56.67	0	1062208..1063617	-	469	19552231	fumC	NCgl0967	-	fumarate hydratase
968	 52.85	0	1063936..1064427	+	163	19552232	-	NCgl0968	-	hypothetical protein
969	 45.08	-2	1064475..1064738	-	87	19552233	-	NCgl0969	-	hypothetical protein
970	 50.67	0	1064751..1065200	-	149	19552234	-	NCgl0970	-	hypothetical protein
971	 56.26	0	1065301..1065867	-	188	19552235	-	NCgl0971	-	hypothetical protein
972	 53.55	0	1066110..1067573	+	487	19552236	-	NCgl0972	-	putative reductase
973	 52.91	0	1067570..1068652	+	360	19552237	-	NCgl0973	-	acyl-CoA dehydrogenase
974	 58.92	+1	1068649..1069848	+	399	19552238	-	NCgl0974	-	acyl-CoA dehydrogenase
975	 53.69	0	1069959..1071137	+	392	19552239	-	NCgl0975	-	coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase
976	 57.64	0	1071476..1072483	-	335	19552240	glpX	NCgl0976	-	fructose 1,6-bisphosphatase II
977	 50.28	-1	1072718..1073248	+	176	19552241	-	NCgl0977	-	hypothetical protein
978	 52.49	0	1073337..1075121	-	594	19552242	-	NCgl0978	-	hypothetical protein
979	 55.70	0	1075326..1075553	-	75	19552243	-	NCgl0979	-	hypothetical protein
980	 55.28	0	1075664..1075909	-	81	19552245	-	NCgl0980	-	exodeoxyribonuclease VII small subunit
981	 60.37	+1	1075930..1077183	-	417	19552246	xseA	NCgl0981	-	exodeoxyribonuclease VII large subunit
982	 56.03	0	1077297..1078274	+	325	19552247	ispH	NCgl0982	-	4-hydroxy-3-methylbut-2-enyl diphosphate reductase
983	 57.39	0	1078316..1079080	-	254	19552248	-	NCgl0983	-	hypothetical protein
984	 53.56	0	1079218..1080690	-	490	19552249	-	NCgl0984	-	hypothetical protein
985	 49.18	-1	1080783..1080965	-	60	19552250	-	NCgl0985	-	hypothetical protein
986	 53.66	0	1080969..1082660	-	563	19552251	-	NCgl0986	-	SNF family Na(+)-dependent transporter
987	 51.54	0	1082948..1084183	-	411	19552252	-	NCgl0987	-	hypothetical protein
988	 55.71	0	1084380..1085465	+	361	19552253	-	NCgl0988	-	translation-associated GTPase
989	 60.33	+1	1085791..1086090	+	99	19552255	-	NCgl0989	-	plasmid maintenance system antidote protein
990	 62.06	+2	1086096..1086920	+	274	19552256	-	NCgl0990	-	ornithine carbamoyltransferase
991	 61.90	+1	1087041..1087544	-	167	19552257	-	NCgl0991	-	acetyltransferase
992	 61.47	+1	1087661..1088218	-	185	19552258	-	NCgl0992	-	dehydrogenase
993	 58.56	+1	1088532..1089740	-	402	19552260	-	NCgl0993	-	transposase
994	 48.81	-1	1090163..1093219	+	1018	19552261	-	NCgl0994	-	GGDEF family protein
995	 50.82	0	1093227..1094696	+	489	19552262	-	NCgl0995	-	hypothetical protein
996	 45.05	-2	1094693..1094914	+	73	19552263	-	NCgl0996	-	hypothetical protein
997	 56.55	0	1095052..1095387	+	111	19552264	-	NCgl0997	-	hypothetical protein
998	 53.06	0	1095384..1095677	-	97	19552265	-	NCgl0998	-	hypothetical protein
999	 51.85	0	1095716..1096093	-	125	23308818	-	NCgl0999	-	hypothetical protein
1000	 52.38	0	1096185..1096331	-	48	19552267	-	NCgl1000	-	hypothetical protein
1001	 50.14	-1	1096743..1097111	-	122	19552269	-	NCgl1001	-	hypothetical protein
1002	 51.30	0	1097229..1097729	+	166	19552270	-	NCgl1002	-	hypothetical protein
1003	 52.24	0	1097792..1098595	+	267	19552271	-	NCgl1003	-	aldo/keto reductase
1004	 51.54	0	1098609..1098932	+	107	19552272	-	NCgl1004	-	hypothetical protein
1005	 51.60	0	1099112..1099768	-	218	23308819	-	NCgl1005	-	nucleoside-diphosphate-sugar epimerase
1006	 52.70	0	1099917..1101656	+	579	23308820	-	NCgl1006	-	putative sulfate permease
1007	 45.33	-2	1102043..1102642	+	199	19552277	-	NCgl1007	-	hypothetical protein
1008	 44.71	-2	1102695..1103195	+	166	19552278	-	NCgl1008	-	hypothetical protein
1009	 49.11	-1	1103192..1103527	+	111	19552279	-	NCgl1009	-	hypothetical protein
1010	 48.72	-1	1103951..1104106	+	51	19552281	-	NCgl1010	-	hypothetical protein
1011	 57.68	0	1104100..1106058	-	652	19552282	-	NCgl1011	-	hypothetical protein
1012	 56.04	0	1106083..1107456	-	457	19552283	-	NCgl1012	-	Mg-chelatase subunit ChlI
1013	 54.70	0	1107503..1108204	+	233	19552284	-	NCgl1013	-	phosphoglycerate mutase
1014	 52.68	0	1108201..1108908	+	235	19552285	-	NCgl1014	-	hypothetical protein
54.31	MEAN

3.83	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.