IslandPath Analysis: Corynebacterium glutamicum ATCC 13032



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 54.31   STD DEV: 3.83
Corynebacterium glutamicum ATCC 13032, complete genome - 1..3309401
2993 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
778	 53.49	0	853612..854727	+	371	19552039	-	NCgl0778	-	ABC-type cobalamin/Fe3+-siderophore transport system, permease component
779	 53.84	0	854724..855479	+	251	19552040	-	NCgl0779	-	ABC-type cobalamin/Fe3+-siderophore transport system, ATPase component
780	 53.35	0	861592..862755	+	387	19552041	-	NCgl0780	-	aminotransferase
781	 56.07	0	862750..863391	-	213	19552042	-	NCgl0781	-	hypothetical protein
782	 58.18	+1	863393..865066	-	557	19552043	-	NCgl0782	-	putative helicase
783	 57.13	0	865116..867317	-	733	19552044	-	NCgl0783	-	hypothetical protein
784	 56.25	0	867383..867574	+	63	19552045	-	NCgl0784	-	hypothetical protein
785	 60.31	+1	867800..868381	-	193	19552046	-	NCgl0785	-	hypothetical protein
786	 52.08	0	868938..869321	+	127	19552047	-	NCgl0786	-	cold shock protein
787	 51.14	0	869376..869903	-	175	19552048	-	NCgl0787	-	hypothetical protein
788	 49.81	-1	869915..870691	-	258	19552049	-	NCgl0788	-	glutamine cyclotransferase
789	 55.21	0	870718..871398	-	226	19552050	-	NCgl0789	-	hypothetical protein
790	 54.92	0	871852..873213	+	453	19552051	-	NCgl0790	-	permease
791	 58.48	+1	873213..874043	+	276	19552052	-	NCgl0791	-	rRNA methylase
792	 55.67	0	874066..874938	-	290	19552053	-	NCgl0792	-	hypothetical protein
793	 54.49	0	874948..875883	-	311	19552054	-	NCgl0793	-	hypothetical protein
794	 57.29	0	875982..877112	-	376	19552055	-	NCgl0794	-	phosphoserine aminotransferase
795	 55.02	0	877838..879151	+	437	19552056	gltA	NCgl0795	-	type II citrate synthase
796	 56.86	0	879276..879632	+	118	19552057	-	NCgl0796	-	FKBP-type peptidyl-prolyl cis-trans isomerase 1
797	 59.04	+1	879639..881093	-	484	19552058	-	NCgl0797	-	acetyl-CoA carboxylase beta subunit
798	 48.94	-1	881707..881988	+	93	19552059	-	NCgl0798	-	uncharacterized membrane protein
799	 55.74	0	881995..883650	+	551	19552060	-	NCgl0799	-	Na+/proline, Na+/panthothenate symporter or related permease
800	 50.06	-1	883768..884544	+	258	19552061	-	NCgl0800	-	hypothetical protein
801	 55.04	0	884546..885388	-	280	19552062	-	NCgl0801	-	hypothetical protein
802	 59.36	+1	885672..894581	+	2969	19552063	-	NCgl0802	-	fatty-acid synthase
803	 55.28	0	894703..895194	+	163	19552064	-	NCgl0803	-	hypothetical protein
804	 46.15	-2	895441..895596	+	51	19552065	-	NCgl0804	-	hypothetical protein
805	 53.43	0	895593..896642	-	349	19552066	-	NCgl0805	-	hypothetical protein
806	 52.21	0	896716..897144	-	142	19552067	-	NCgl0806	-	hypothetical protein
807	 47.04	-1	897423..897692	+	89	19552068	-	NCgl0807	-	hypothetical protein
808	 55.00	0	897724..897963	-	79	19552069	-	NCgl0808	-	hypothetical protein
809	 58.82	+1	897976..898434	-	152	19552070	-	NCgl0809	-	dihydrofolate reductase
810	 53.18	0	898431..899231	-	266	19552071	thyA	NCgl0810	-	thymidylate synthase
811	 57.84	0	899250..900008	-	252	19552072	-	NCgl0811	-	inositol monophosphatase family protein
812	 58.93	+1	900043..904605	+	1520	23308807	-	NCgl0812	-	Lhr-like helicase
813	 55.51	0	904615..905385	+	256	19552074	-	NCgl0813	-	formamidopyrimidine-DNA glycosylase
814	 52.31	0	905389..905799	+	136	19552075	-	NCgl0814	-	hypothetical protein
815	 55.06	0	905789..906391	-	200	19552076	-	NCgl0815	-	hypothetical protein
816	 52.21	0	906556..907731	-	391	19552077	-	NCgl0816	-	cyanate permease
817	 54.96	0	907756..909378	-	540	19552078	pgi	NCgl0817	-	glucose-6-phosphate isomerase
818	 57.00	0	909518..910696	-	392	19552079	-	NCgl0818	-	hypothetical protein
819	 54.25	0	910852..911157	-	101	19552080	-	NCgl0819	-	hypothetical protein
820	 55.67	0	911226..913517	+	763	19552081	-	NCgl0820	-	helicase
821	 50.36	-1	913474..915699	-	741	19552082	-	NCgl0821	-	ABC-type transporter, permease component
822	 62.03	+2	915696..916364	-	222	19552083	-	NCgl0822	-	ABC-type transporter, ATPase component
823	 53.73	0	916365..916874	-	169	19552084	-	NCgl0823	-	transcriptional regulator
824	 57.70	0	916967..917680	-	237	19552085	-	NCgl0824	-	metalloendopeptidase-like membrane protein
825	 56.06	0	918036..919355	+	439	19552086	-	NCgl0825	-	hypothetical protein
826	 51.68	0	919366..919959	+	197	19552087	purN	NCgl0826	-	phosphoribosylglycinamide formyltransferase
827	 56.88	0	919967..921529	+	520	19552088	purH	NCgl0827	-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
828	 52.80	0	921594..922415	+	273	19552089	-	NCgl0828	-	citrate lyase beta subunit
829	 60.24	+1	922393..923061	-	222	19552090	-	NCgl0829	-	transcriptional regulator
830	 57.66	0	923135..923989	-	284	19552091	-	NCgl0830	-	hypothetical protein
831	 59.92	+1	924156..924407	-	83	19552092	rpsR	NCgl0831	-	30S ribosomal protein S18
832	 57.84	0	924422..924727	-	101	19552093	rpsN	NCgl0832	-	30S ribosomal protein S14
833	 50.30	-1	924731..924895	-	54	19552094	rpmG	NCgl0833	-	50S ribosomal protein L33
834	 58.23	+1	924898..925134	-	78	19552095	rpmB	NCgl0834	-	50S ribosomal protein L28
835	 56.33	0	925322..926878	-	518	19552096	-	NCgl0835	-	sulfate permease
836	 47.94	-1	926928..927242	-	104	19552097	-	NCgl0836	-	transcriptional regulator
837	 57.68	0	927474..927740	+	88	19552098	rpmE2	NCgl0837	-	50S ribosomal protein L31 type B
838	 59.77	+1	927752..927925	+	57	19552099	rpmF	NCgl0838	-	50S ribosomal protein L32
839	 51.50	0	928117..928815	+	232	19552100	-	NCgl0839	-	two-component system, response regulator
840	 49.20	-1	928884..930251	+	455	19552101	-	NCgl0840	-	two-component system, sensory transduction histidine kinase
841	 51.06	0	930326..931651	+	441	19552102	-	NCgl0841	-	trypsin-like serine protease
842	 55.95	0	931706..932293	+	195	19552103	-	NCgl0842	-	molybdopterin biosynthesis enzyme
843	 53.19	0	932567..932974	-	135	19552104	-	NCgl0843	-	large-conductance mechanosensitive channel
844	 50.99	0	933057..933611	-	184	19552105	-	NCgl0844	-	hypothetical protein
845	 55.85	0	933730..934302	-	190	19552106	-	NCgl0845	-	5-formyltetrahydrofolate cyclo-ligase
846	 53.80	0	934375..935322	+	315	19552107	-	NCgl0846	-	UDP-glucose pyrophosphorylase
847	 58.41	+1	935351..936610	+	419	19552108	-	NCgl0847	-	molybdopterin biosynthesis enzyme
848	 57.53	0	936720..937277	+	185	19552109	-	NCgl0848	-	putative acetyltransferase
849	 54.83	0	937391..938404	+	337	19552110	-	NCgl0849	-	hypothetical protein
850	 52.45	0	938427..939629	+	400	19552111	-	NCgl0850	-	cyanate permease
851	 51.96	0	939686..940093	+	135	19552112	-	NCgl0851	-	hypothetical protein
852	 55.36	0	940086..940757	+	223	19552113	-	NCgl0852	-	hypothetical protein
853	 54.26	0	940768..941928	+	386	19552114	-	NCgl0853	-	glycosidase
854	 56.94	0	942378..943940	-	520	19552115	-	NCgl0854	-	dolichyl-phosphate-mannose--protein O-mannosyl transferase PMT1
855	 58.78	+1	943988..944836	+	282	19552116	-	NCgl0855	-	methyltransferase
856	 51.74	0	945029..946783	+	584	19552117	-	NCgl0856	-	choline-glycine betaine transporter
857	 56.68	0	946840..948672	+	610	19552118	-	NCgl0857	-	methionyl-tRNA synthetase
858	 54.04	0	948791..950842	+	683	19552119	-	NCgl0858	-	putative helicase
859	 51.42	0	950825..951460	-	211	19552120	-	NCgl0859	-	hypothetical protein
860	 55.30	0	951831..952991	-	386	19552121	-	NCgl0860	-	hypothetical protein
861	 59.22	+1	953040..953549	-	169	19552122	-	NCgl0861	-	hypothetical protein
862	 52.19	0	953973..954269	+	98	23308808	-	NCgl0862	-	hypothetical protein
863	 52.29	0	954277..954756	+	159	23308809	-	NCgl0863	-	hypothetical protein
864	 64.27	+2	954941..955357	+	138	23308810	-	NCgl0864	-	hypothetical protein
865	 62.12	+2	955683..957398	-	571	19552127	-	NCgl0865	-	D-lactate dehydrogenase
866	 60.36	+1	957841..958998	-	385	19552128	-	NCgl0866	-	adenine specific DNA methylase Mod
867	 52.19	0	960081..960377	+	98	23308811	-	NCgl0867	-	hypothetical protein
868	 52.24	0	960463..960864	+	133	19552131	-	NCgl0868	-	hypothetical protein
869	 62.22	+2	961297..961656	+	119	19552132	-	NCgl0869	-	ArsR family transcriptional regulator
870	 61.81	+1	961656..962252	+	198	19552133	-	NCgl0870	-	hypothetical protein
871	 53.84	0	962809..963642	+	277	19552134	-	NCgl0871	-	Mg-dependent DNase
872	 54.40	0	963813..964937	+	374	19552135	-	NCgl0872	-	hypothetical protein
873	 55.33	0	964974..965855	+	293	19552136	ksgA	NCgl0873	-	dimethyladenosine transferase
874	 60.36	+1	965852..966787	+	311	19552137	-	NCgl0874	-	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
875	 59.37	+1	966828..968663	+	611	19552138	-	NCgl0875	-	ABC-type transporter
876	 60.25	+1	968667..969461	+	264	19552139	-	NCgl0876	-	pyridoxal/pyridoxine/pyridoxamine kinase
877	 52.17	0	969458..969940	-	160	19552140	-	NCgl0877	-	hypothetical protein
54.31	MEAN

3.83	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.