IslandPath Analysis: Corynebacterium glutamicum ATCC 13032



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 54.31   STD DEV: 3.83
Corynebacterium glutamicum ATCC 13032, complete genome - 1..3309401
2993 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
736	 55.78	0	806737..807939	-	400	19551996	-	NCgl0736	-	hypothetical protein
737	 57.57	0	807943..809217	-	424	23308803	-	NCgl0737	-	putative helicase
738	 50.88	0	809286..809513	+	75	19551998	-	NCgl0738	-	hypothetical protein
739	 58.97	+1	809528..810397	+	289	19551999	-	NCgl0739	-	hypothetical protein
740	 55.12	0	810405..811166	+	253	19552000	-	NCgl0740	-	hypothetical protein
741	 59.59	+1	811170..814220	+	1016	19552001	-	NCgl0741	-	putative helicase
742	 56.86	0	814213..817425	+	1070	19552002	-	NCgl0742	-	putative helicase
743	 57.16	0	817465..818526	+	353	19552003	-	NCgl0743	-	NAD-binding component of Kef-type K+ transport system
744	 53.97	0	818523..819239	+	238	19552004	-	NCgl0744	-	NTP pyrophosphohydrolase
745	 57.54	0	819254..821290	+	678	19552005	-	NCgl0745	-	putative helicase
746	 57.68	0	821287..822087	-	266	19552006	-	NCgl0746	-	hypothetical protein
747	 57.26	0	822184..822672	+	162	19552007	-	NCgl0747	-	hypothetical protein
748	 56.79	0	822677..824104	-	475	19552008	-	NCgl0748	-	hypothetical protein
749	 55.18	0	824190..825242	+	350	19552009	-	NCgl0749	-	hypothetical protein
750	 54.76	0	825239..825658	-	139	19552010	-	NCgl0750	-	hypothetical protein
751	 56.57	0	825993..826517	-	174	19552011	-	NCgl0751	-	hypothetical protein
752	 53.89	0	826616..829573	+	985	23308804	-	NCgl0752	-	hypothetical protein
753	 64.46	+2	829624..830985	-	453	19552013	-	NCgl0753	-	transcriptional regulator
754	 60.10	+1	831015..831974	+	319	19552014	-	NCgl0754	-	pyridoxine biosynthesis protein
755	 57.38	0	831971..832573	+	200	19552015	-	NCgl0755	-	glutamine amidotransferase subunit PdxT
756	 50.82	0	832792..833157	-	121	19552016	-	NCgl0756	-	hypothetical protein
757	 53.52	0	833572..834636	+	354	19552017	-	NCgl0757	-	hypothetical protein
758	 50.11	-1	834927..835391	+	154	19552018	-	NCgl0758	-	hypothetical protein
759	 45.83	-2	835433..835840	+	135	19552019	-	NCgl0759	-	hypothetical protein
760	 48.30	-1	837312..838895	+	527	19552021	-	NCgl0760	-	hypothetical protein
761	 45.60	-2	838925..839356	+	143	19552022	-	NCgl0761	-	hypothetical protein
762	 43.11	-2	839409..839633	+	74	19552023	-	NCgl0762	-	hypothetical protein
763	 47.56	-1	839630..840142	+	170	23308805	-	NCgl0763	-	hypothetical protein
764	 44.23	-2	840434..840745	-	103	19552025	-	NCgl0764	-	hypothetical protein
765	 60.79	+1	841514..842296	-	260	19552026	-	NCgl0765	-	fructose-1,6-bisphosphatase
766	 59.59	+1	842303..843178	-	291	19552027	-	NCgl0766	-	fructose-1,6-bisphosphatase
767	 55.56	0	843257..844363	+	368	19552028	prfB	NCgl0767	-	peptide chain release factor 2
768	 53.77	0	844495..845184	+	229	19552029	-	NCgl0768	-	cell-division ATP-binding protein
769	 53.60	0	845198..846100	+	300	19552030	-	NCgl0769	-	cell division protein
770	 53.54	0	846137..846631	+	164	19552031	smpB	NCgl0770	-	SsrA-binding protein
771	 54.52	0	846632..846985	+	117	19552032	-	NCgl0771	-	hypothetical protein
772	 61.72	+1	847727..848029	+	100	23308806	-	NCgl0772	-	hypothetical protein
773	 52.29	0	848496..849323	-	275	19552034	-	NCgl0773	-	siderophore-interacting protein
774	 55.05	0	849323..850243	-	306	19552035	-	NCgl0774	-	ABC-type cobalamin/Fe3+-siderophore transport system, periplasmic component
775	 58.38	+1	850409..850999	-	196	19552036	-	NCgl0775	-	hypothetical protein
776	 56.83	0	851351..852367	+	338	19552037	-	NCgl0776	-	ABC-type cobalamin/Fe3+-siderophore transport system, periplasmic component
777	 54.09	0	852618..853619	+	333	19552038	-	NCgl0777	-	ABC-type cobalamin/Fe3+-siderophore transport system, permease component
778	 53.49	0	853612..854727	+	371	19552039	-	NCgl0778	-	ABC-type cobalamin/Fe3+-siderophore transport system, permease component
779	 53.84	0	854724..855479	+	251	19552040	-	NCgl0779	-	ABC-type cobalamin/Fe3+-siderophore transport system, ATPase component
780	 53.35	0	861592..862755	+	387	19552041	-	NCgl0780	-	aminotransferase
781	 56.07	0	862750..863391	-	213	19552042	-	NCgl0781	-	hypothetical protein
782	 58.18	+1	863393..865066	-	557	19552043	-	NCgl0782	-	putative helicase
783	 57.13	0	865116..867317	-	733	19552044	-	NCgl0783	-	hypothetical protein
784	 56.25	0	867383..867574	+	63	19552045	-	NCgl0784	-	hypothetical protein
785	 60.31	+1	867800..868381	-	193	19552046	-	NCgl0785	-	hypothetical protein
786	 52.08	0	868938..869321	+	127	19552047	-	NCgl0786	-	cold shock protein
787	 51.14	0	869376..869903	-	175	19552048	-	NCgl0787	-	hypothetical protein
788	 49.81	-1	869915..870691	-	258	19552049	-	NCgl0788	-	glutamine cyclotransferase
789	 55.21	0	870718..871398	-	226	19552050	-	NCgl0789	-	hypothetical protein
790	 54.92	0	871852..873213	+	453	19552051	-	NCgl0790	-	permease
791	 58.48	+1	873213..874043	+	276	19552052	-	NCgl0791	-	rRNA methylase
792	 55.67	0	874066..874938	-	290	19552053	-	NCgl0792	-	hypothetical protein
793	 54.49	0	874948..875883	-	311	19552054	-	NCgl0793	-	hypothetical protein
794	 57.29	0	875982..877112	-	376	19552055	-	NCgl0794	-	phosphoserine aminotransferase
795	 55.02	0	877838..879151	+	437	19552056	gltA	NCgl0795	-	type II citrate synthase
796	 56.86	0	879276..879632	+	118	19552057	-	NCgl0796	-	FKBP-type peptidyl-prolyl cis-trans isomerase 1
797	 59.04	+1	879639..881093	-	484	19552058	-	NCgl0797	-	acetyl-CoA carboxylase beta subunit
798	 48.94	-1	881707..881988	+	93	19552059	-	NCgl0798	-	uncharacterized membrane protein
799	 55.74	0	881995..883650	+	551	19552060	-	NCgl0799	-	Na+/proline, Na+/panthothenate symporter or related permease
800	 50.06	-1	883768..884544	+	258	19552061	-	NCgl0800	-	hypothetical protein
801	 55.04	0	884546..885388	-	280	19552062	-	NCgl0801	-	hypothetical protein
802	 59.36	+1	885672..894581	+	2969	19552063	-	NCgl0802	-	fatty-acid synthase
803	 55.28	0	894703..895194	+	163	19552064	-	NCgl0803	-	hypothetical protein
804	 46.15	-2	895441..895596	+	51	19552065	-	NCgl0804	-	hypothetical protein
805	 53.43	0	895593..896642	-	349	19552066	-	NCgl0805	-	hypothetical protein
806	 52.21	0	896716..897144	-	142	19552067	-	NCgl0806	-	hypothetical protein
807	 47.04	-1	897423..897692	+	89	19552068	-	NCgl0807	-	hypothetical protein
808	 55.00	0	897724..897963	-	79	19552069	-	NCgl0808	-	hypothetical protein
809	 58.82	+1	897976..898434	-	152	19552070	-	NCgl0809	-	dihydrofolate reductase
810	 53.18	0	898431..899231	-	266	19552071	thyA	NCgl0810	-	thymidylate synthase
811	 57.84	0	899250..900008	-	252	19552072	-	NCgl0811	-	inositol monophosphatase family protein
812	 58.93	+1	900043..904605	+	1520	23308807	-	NCgl0812	-	Lhr-like helicase
813	 55.51	0	904615..905385	+	256	19552074	-	NCgl0813	-	formamidopyrimidine-DNA glycosylase
814	 52.31	0	905389..905799	+	136	19552075	-	NCgl0814	-	hypothetical protein
815	 55.06	0	905789..906391	-	200	19552076	-	NCgl0815	-	hypothetical protein
816	 52.21	0	906556..907731	-	391	19552077	-	NCgl0816	-	cyanate permease
817	 54.96	0	907756..909378	-	540	19552078	pgi	NCgl0817	-	glucose-6-phosphate isomerase
818	 57.00	0	909518..910696	-	392	19552079	-	NCgl0818	-	hypothetical protein
819	 54.25	0	910852..911157	-	101	19552080	-	NCgl0819	-	hypothetical protein
820	 55.67	0	911226..913517	+	763	19552081	-	NCgl0820	-	helicase
821	 50.36	-1	913474..915699	-	741	19552082	-	NCgl0821	-	ABC-type transporter, permease component
822	 62.03	+2	915696..916364	-	222	19552083	-	NCgl0822	-	ABC-type transporter, ATPase component
823	 53.73	0	916365..916874	-	169	19552084	-	NCgl0823	-	transcriptional regulator
824	 57.70	0	916967..917680	-	237	19552085	-	NCgl0824	-	metalloendopeptidase-like membrane protein
825	 56.06	0	918036..919355	+	439	19552086	-	NCgl0825	-	hypothetical protein
826	 51.68	0	919366..919959	+	197	19552087	purN	NCgl0826	-	phosphoribosylglycinamide formyltransferase
827	 56.88	0	919967..921529	+	520	19552088	purH	NCgl0827	-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
828	 52.80	0	921594..922415	+	273	19552089	-	NCgl0828	-	citrate lyase beta subunit
829	 60.24	+1	922393..923061	-	222	19552090	-	NCgl0829	-	transcriptional regulator
830	 57.66	0	923135..923989	-	284	19552091	-	NCgl0830	-	hypothetical protein
831	 59.92	+1	924156..924407	-	83	19552092	rpsR	NCgl0831	-	30S ribosomal protein S18
832	 57.84	0	924422..924727	-	101	19552093	rpsN	NCgl0832	-	30S ribosomal protein S14
833	 50.30	-1	924731..924895	-	54	19552094	rpmG	NCgl0833	-	50S ribosomal protein L33
834	 58.23	+1	924898..925134	-	78	19552095	rpmB	NCgl0834	-	50S ribosomal protein L28
835	 56.33	0	925322..926878	-	518	19552096	-	NCgl0835	-	sulfate permease
54.31	MEAN

3.83	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.