IslandPath Analysis: Corynebacterium glutamicum ATCC 13032



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 54.31   STD DEV: 3.83
Corynebacterium glutamicum ATCC 13032, complete genome - 1..3309401
2993 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
692	 49.65	-1	742409..742831	+	140	19551951	-	NCgl0692	-	hypothetical protein
693	 54.22	0	742828..743052	-	74	19551952	-	NCgl0693	-	hypothetical protein
694	 56.87	0	743064..743900	-	278	19551953	-	NCgl0694	-	ABC-type transporter, permease component
695	 56.71	0	743897..744931	-	344	19551954	-	NCgl0695	-	ABC-type transporter, permease component
696	 54.61	0	745043..745498	-	151	19551955	-	NCgl0696	-	hypothetical protein
697	 57.49	0	745619..746893	-	424	19551956	-	NCgl0697	-	ABC-type transporter, periplasmic component
698	 58.56	+1	747028..748026	-	332	19551957	-	NCgl0698	-	ABC-type transporter, ATPase component
699	 52.58	0	748020..748445	+	141	23308801	-	NCgl0699	-	hypothetical protein
700	 47.51	-1	748883..753685	-	1600	19551960	-	NCgl0700	-	helicase family protein
701	 47.60	-1	753694..757395	-	1233	19551961	-	NCgl0701	-	hypothetical protein
702	 50.31	-1	757627..758280	-	217	19551962	-	NCgl0702	-	hypothetical protein
703	 46.14	-2	758361..760796	-	811	19551963	-	NCgl0703	-	hypothetical protein
704	 55.54	0	760903..763203	-	766	19551964	-	NCgl0704	-	putative helicase
705	 53.42	0	763234..769536	-	2100	19551965	-	NCgl0705	-	putative helicase
706	 51.34	0	769544..774142	-	1532	19551966	-	NCgl0706	-	type II restriction enzyme, methylase subunits
707	 53.24	0	774147..777035	-	962	19551967	-	NCgl0707	-	SNF2 family helicase
708	 58.25	+1	777155..778711	-	518	19551968	-	NCgl0708	-	transcriptional regulator
709	 55.10	0	779041..779913	+	290	19551969	-	NCgl0709	-	glycosyltransferase
710	 57.39	0	780086..781174	+	362	19551970	-	NCgl0710	-	nucleoside-diphosphate-sugar pyrophosphorylase
711	 53.65	0	781564..781878	+	104	19551971	-	NCgl0711	-	hypothetical protein
712	 55.80	0	782159..782563	-	134	19551972	-	NCgl0712	-	hypothetical protein
713	 57.51	0	782712..783104	+	130	19551973	-	NCgl0713	-	hypothetical protein
714	 54.83	0	783184..784560	+	458	19551974	manB	NCgl0714	-	phosphomannomutase/phosphoglucomutase
715	 57.94	0	784635..785642	+	335	19551975	-	NCgl0715	-	hypothetical protein
716	 57.05	0	785643..786827	+	394	19551976	-	NCgl0716	-	phosphomannose isomerase
717	 54.33	0	787167..787952	-	261	19551977	-	NCgl0717	-	hypothetical protein
718	 52.26	0	788196..788549	+	117	19551978	-	NCgl0718	-	hypothetical protein
719	 57.13	0	788660..790096	+	478	19551979	-	NCgl0719	-	S-adenosyl-L-homocysteine hydrolase
720	 60.46	+1	790096..790707	+	203	19551980	-	NCgl0720	-	thymidylate kinase
721	 55.80	0	790732..791412	+	226	19551981	-	NCgl0721	-	two-component system response regulator
722	 56.67	0	791512..793011	+	499	19551982	-	NCgl0722	-	two-component system sensory transduction histidine kinase
723	 58.35	+1	793008..794714	+	568	19551983	-	NCgl0723	-	lipoprotein LpqB
724	 60.07	+1	794714..795304	+	196	23308802	-	NCgl0724	-	hypothetical protein
725	 54.50	0	795448..796113	+	221	19551984	-	NCgl0725	-	ribosome-associated protein Y
726	 56.70	0	796250..798787	+	845	19551985	secA	NCgl0726	-	preprotein translocase subunit SecA
727	 59.12	+1	799284..799694	+	136	19551987	-	NCgl0727	-	hypothetical protein
728	 56.21	0	799697..800203	+	168	19551988	-	NCgl0728	-	hypothetical protein
729	 56.61	0	800205..801089	-	294	19551989	-	NCgl0729	-	hypothetical protein
730	 53.13	0	801187..802479	-	430	19551990	-	NCgl0730	-	3-phosphoshikimate 1-carboxyvinyltransferase
731	 51.60	0	802508..803131	+	207	19551991	-	NCgl0731	-	hypothetical protein
732	 52.83	0	803128..804240	-	370	19551992	-	NCgl0732	-	hypothetical protein
733	 50.89	0	804408..805028	+	206	19551993	-	NCgl0733	-	RNA polymerase sigma factor RpoE
734	 61.69	+1	805532..805792	-	86	19551994	-	NCgl0734	-	hypothetical protein
735	 52.48	0	806318..806740	+	140	19551995	-	NCgl0735	-	hypothetical protein
736	 55.78	0	806737..807939	-	400	19551996	-	NCgl0736	-	hypothetical protein
737	 57.57	0	807943..809217	-	424	23308803	-	NCgl0737	-	putative helicase
738	 50.88	0	809286..809513	+	75	19551998	-	NCgl0738	-	hypothetical protein
739	 58.97	+1	809528..810397	+	289	19551999	-	NCgl0739	-	hypothetical protein
740	 55.12	0	810405..811166	+	253	19552000	-	NCgl0740	-	hypothetical protein
741	 59.59	+1	811170..814220	+	1016	19552001	-	NCgl0741	-	putative helicase
742	 56.86	0	814213..817425	+	1070	19552002	-	NCgl0742	-	putative helicase
743	 57.16	0	817465..818526	+	353	19552003	-	NCgl0743	-	NAD-binding component of Kef-type K+ transport system
744	 53.97	0	818523..819239	+	238	19552004	-	NCgl0744	-	NTP pyrophosphohydrolase
745	 57.54	0	819254..821290	+	678	19552005	-	NCgl0745	-	putative helicase
746	 57.68	0	821287..822087	-	266	19552006	-	NCgl0746	-	hypothetical protein
747	 57.26	0	822184..822672	+	162	19552007	-	NCgl0747	-	hypothetical protein
748	 56.79	0	822677..824104	-	475	19552008	-	NCgl0748	-	hypothetical protein
749	 55.18	0	824190..825242	+	350	19552009	-	NCgl0749	-	hypothetical protein
750	 54.76	0	825239..825658	-	139	19552010	-	NCgl0750	-	hypothetical protein
751	 56.57	0	825993..826517	-	174	19552011	-	NCgl0751	-	hypothetical protein
752	 53.89	0	826616..829573	+	985	23308804	-	NCgl0752	-	hypothetical protein
753	 64.46	+2	829624..830985	-	453	19552013	-	NCgl0753	-	transcriptional regulator
754	 60.10	+1	831015..831974	+	319	19552014	-	NCgl0754	-	pyridoxine biosynthesis protein
755	 57.38	0	831971..832573	+	200	19552015	-	NCgl0755	-	glutamine amidotransferase subunit PdxT
756	 50.82	0	832792..833157	-	121	19552016	-	NCgl0756	-	hypothetical protein
757	 53.52	0	833572..834636	+	354	19552017	-	NCgl0757	-	hypothetical protein
758	 50.11	-1	834927..835391	+	154	19552018	-	NCgl0758	-	hypothetical protein
759	 45.83	-2	835433..835840	+	135	19552019	-	NCgl0759	-	hypothetical protein
760	 48.30	-1	837312..838895	+	527	19552021	-	NCgl0760	-	hypothetical protein
761	 45.60	-2	838925..839356	+	143	19552022	-	NCgl0761	-	hypothetical protein
762	 43.11	-2	839409..839633	+	74	19552023	-	NCgl0762	-	hypothetical protein
763	 47.56	-1	839630..840142	+	170	23308805	-	NCgl0763	-	hypothetical protein
764	 44.23	-2	840434..840745	-	103	19552025	-	NCgl0764	-	hypothetical protein
765	 60.79	+1	841514..842296	-	260	19552026	-	NCgl0765	-	fructose-1,6-bisphosphatase
766	 59.59	+1	842303..843178	-	291	19552027	-	NCgl0766	-	fructose-1,6-bisphosphatase
767	 55.56	0	843257..844363	+	368	19552028	prfB	NCgl0767	-	peptide chain release factor 2
768	 53.77	0	844495..845184	+	229	19552029	-	NCgl0768	-	cell-division ATP-binding protein
769	 53.60	0	845198..846100	+	300	19552030	-	NCgl0769	-	cell division protein
770	 53.54	0	846137..846631	+	164	19552031	smpB	NCgl0770	-	SsrA-binding protein
771	 54.52	0	846632..846985	+	117	19552032	-	NCgl0771	-	hypothetical protein
772	 61.72	+1	847727..848029	+	100	23308806	-	NCgl0772	-	hypothetical protein
773	 52.29	0	848496..849323	-	275	19552034	-	NCgl0773	-	siderophore-interacting protein
774	 55.05	0	849323..850243	-	306	19552035	-	NCgl0774	-	ABC-type cobalamin/Fe3+-siderophore transport system, periplasmic component
775	 58.38	+1	850409..850999	-	196	19552036	-	NCgl0775	-	hypothetical protein
776	 56.83	0	851351..852367	+	338	19552037	-	NCgl0776	-	ABC-type cobalamin/Fe3+-siderophore transport system, periplasmic component
777	 54.09	0	852618..853619	+	333	19552038	-	NCgl0777	-	ABC-type cobalamin/Fe3+-siderophore transport system, permease component
778	 53.49	0	853612..854727	+	371	19552039	-	NCgl0778	-	ABC-type cobalamin/Fe3+-siderophore transport system, permease component
779	 53.84	0	854724..855479	+	251	19552040	-	NCgl0779	-	ABC-type cobalamin/Fe3+-siderophore transport system, ATPase component
780	 53.35	0	861592..862755	+	387	19552041	-	NCgl0780	-	aminotransferase
781	 56.07	0	862750..863391	-	213	19552042	-	NCgl0781	-	hypothetical protein
782	 58.18	+1	863393..865066	-	557	19552043	-	NCgl0782	-	putative helicase
783	 57.13	0	865116..867317	-	733	19552044	-	NCgl0783	-	hypothetical protein
784	 56.25	0	867383..867574	+	63	19552045	-	NCgl0784	-	hypothetical protein
785	 60.31	+1	867800..868381	-	193	19552046	-	NCgl0785	-	hypothetical protein
786	 52.08	0	868938..869321	+	127	19552047	-	NCgl0786	-	cold shock protein
787	 51.14	0	869376..869903	-	175	19552048	-	NCgl0787	-	hypothetical protein
788	 49.81	-1	869915..870691	-	258	19552049	-	NCgl0788	-	glutamine cyclotransferase
789	 55.21	0	870718..871398	-	226	19552050	-	NCgl0789	-	hypothetical protein
790	 54.92	0	871852..873213	+	453	19552051	-	NCgl0790	-	permease
791	 58.48	+1	873213..874043	+	276	19552052	-	NCgl0791	-	rRNA methylase
54.31	MEAN

3.83	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.