IslandPathversion 1.0

IslandPath Analysis: Corynebacterium glutamicum ATCC 13032



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 54.31 STD DEV: 3.83
Corynebacterium glutamicum ATCC 13032, complete genome - 1..3309401
2993 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
646	 56.08	0	690703..691722	-	339	19551906	-	NCgl0646	-	ABC-type transporter, permease component
647	 56.84	0	691882..692919	+	345	19551907	-	NCgl0647	-	tryptophanyl-tRNA synthetase
648	 53.68	0	693028..694113	+	361	19551908	-	NCgl0648	-	hypothetical protein
649	 52.87	0	694172..695077	+	301	19551909	-	NCgl0649	-	hypothetical protein
650	 57.36	0	695074..696384	-	436	19551910	-	NCgl0650	-	D-alanyl-D-alanine carboxypeptidase
651	 58.37	+1	696766..697995	-	409	19551911	-	NCgl0651	-	hypothetical protein
652	 60.16	+1	698062..698922	-	286	19551912	-	NCgl0652	-	hypothetical protein
653	 59.47	+1	698919..699182	-	87	19551913	-	NCgl0653	-	hypothetical protein
654	 58.65	+1	699281..699916	+	211	19551914	upp	NCgl0654	-	uracil phosphoribosyltransferase
655	 58.13	0	700010..700384	+	124	19551915	-	NCgl0655	-	transcriptional regulator
656	 54.68	0	700381..701973	-	530	19551916	-	NCgl0656	-	phosphomannomutase
657	 56.62	0	702081..703265	+	394	19551917	-	NCgl0657	-	metal-dependent amidase/aminoacylase/carboxypeptidase
658	 55.60	0	703405..704814	+	469	19551918	-	NCgl0658	-	flavoprotein disulfide reductase
659	 56.76	0	705211..708633	+	1140	19551919	-	NCgl0659	-	pyruvate carboxylase
660	 55.67	0	708839..709711	+	290	19551920	-	NCgl0660	-	hypothetical protein
661	 48.67	-1	709793..710281	+	162	19551921	-	NCgl0661	-	hypothetical protein
662	 58.59	+1	710517..711605	-	362	19551922	-	NCgl0662	-	G3E family GTPase
663	 58.14	+1	711724..712650	+	308	19551923	-	NCgl0663	-	thioredoxin reductase
664	 55.98	0	712738..714234	+	498	19551924	-	NCgl0664	-	hypothetical protein
665	 58.71	+1	714231..715148	+	305	19551925	-	NCgl0665	-	PEP phosphonomutase or related enzyme
666	 54.62	0	715141..716286	+	381	19551926	-	NCgl0666	-	methylcitrate synthase
667	 57.94	0	716283..716660	-	125	19551927	-	NCgl0667	-	hypothetical protein
668	 55.51	0	716684..718009	-	441	19551928	-	NCgl0668	-	transcriptional regulator
669	 55.19	0	718171..718353	+	60	19551929	-	NCgl0669	-	hypothetical protein
670	 58.67	+1	718577..720352	-	591	19551930	-	NCgl0670	-	acyl-CoA carboxylase
671	 58.50	+1	720544..721449	-	301	19551931	-	NCgl0671	-	thiosulfate sulfurtransferase
672	 56.74	0	721777..722844	+	355	19551932	-	NCgl0672	-	hypothetical protein
673	 53.48	0	722922..723338	-	138	19551933	-	NCgl0673	-	hypothetical protein
674	 53.79	0	723412..725562	+	716	19551934	-	NCgl0674	-	acyltransferase
675	 59.60	+1	725869..726462	-	197	19551935	maf	NCgl0675	-	Maf-like protein
676	 53.82	0	726467..726715	-	82	19551936	-	NCgl0676	-	hypothetical protein
677	 54.71	0	726739..728352	-	537	19551937	-	NCgl0677	-	detergent sensitivity rescuer dtsR2
678	 58.58	+1	728693..730324	-	543	19551938	-	NCgl0678	-	detergent sensitivity rescuer dtsR1
679	 52.35	0	730493..731302	+	269	19551939	-	NCgl0679	-	biotin--protein ligase
680	 53.14	0	731387..731800	+	137	19551940	-	NCgl0680	-	hypothetical protein
681	 57.56	0	731857..733020	+	387	19551941	-	NCgl0681	-	phosphoribosylaminoimidazole carboxylase ATPase subunit
682	 52.78	0	733060..734946	+	628	19551942	-	NCgl0682	-	K+ transporter
683	 49.44	-1	734984..735343	+	119	19551943	-	NCgl0683	-	hypothetical protein
684	 55.62	0	735402..735899	+	165	19551944	-	NCgl0684	-	phosphoribosylaminoimidazole carboxylase catalytic subunit
685	 52.41	0	735899..736354	+	151	19551945	-	NCgl0685	-	hypothetical protein
686	 52.58	0	736413..737207	+	264	19551946	-	NCgl0686	-	hypothetical protein
687	 55.73	0	737213..738529	-	438	19551947	-	NCgl0687	-	nitrilotriacetate monooxygenase
688	 53.18	0	738670..740115	-	481	19551948	-	NCgl0688	-	putative transposase
689	 57.70	0	740225..741016	-	263	19551949	fabG	NCgl0689	-	3-ketoacyl-(acyl-carrier-protein) reductase
690	 42.47	-2	741397..741768	+	123	23308800	-	NCgl0690	-	hypothetical protein
691	 53.79	0	741815..742381	-	188	19551950	-	NCgl0691	-	hypothetical protein
692	 49.65	-1	742409..742831	+	140	19551951	-	NCgl0692	-	hypothetical protein
693	 54.22	0	742828..743052	-	74	19551952	-	NCgl0693	-	hypothetical protein
694	 56.87	0	743064..743900	-	278	19551953	-	NCgl0694	-	ABC-type transporter, permease component
695	 56.71	0	743897..744931	-	344	19551954	-	NCgl0695	-	ABC-type transporter, permease component
696	 54.61	0	745043..745498	-	151	19551955	-	NCgl0696	-	hypothetical protein
697	 57.49	0	745619..746893	-	424	19551956	-	NCgl0697	-	ABC-type transporter, periplasmic component
698	 58.56	+1	747028..748026	-	332	19551957	-	NCgl0698	-	ABC-type transporter, ATPase component
699	 52.58	0	748020..748445	+	141	23308801	-	NCgl0699	-	hypothetical protein
700	 47.51	-1	748883..753685	-	1600	19551960	-	NCgl0700	-	helicase family protein
701	 47.60	-1	753694..757395	-	1233	19551961	-	NCgl0701	-	hypothetical protein
702	 50.31	-1	757627..758280	-	217	19551962	-	NCgl0702	-	hypothetical protein
703	 46.14	-2	758361..760796	-	811	19551963	-	NCgl0703	-	hypothetical protein
704	 55.54	0	760903..763203	-	766	19551964	-	NCgl0704	-	putative helicase
705	 53.42	0	763234..769536	-	2100	19551965	-	NCgl0705	-	putative helicase
706	 51.34	0	769544..774142	-	1532	19551966	-	NCgl0706	-	type II restriction enzyme, methylase subunits
707	 53.24	0	774147..777035	-	962	19551967	-	NCgl0707	-	SNF2 family helicase
708	 58.25	+1	777155..778711	-	518	19551968	-	NCgl0708	-	transcriptional regulator
709	 55.10	0	779041..779913	+	290	19551969	-	NCgl0709	-	glycosyltransferase
710	 57.39	0	780086..781174	+	362	19551970	-	NCgl0710	-	nucleoside-diphosphate-sugar pyrophosphorylase
711	 53.65	0	781564..781878	+	104	19551971	-	NCgl0711	-	hypothetical protein
712	 55.80	0	782159..782563	-	134	19551972	-	NCgl0712	-	hypothetical protein
713	 57.51	0	782712..783104	+	130	19551973	-	NCgl0713	-	hypothetical protein
714	 54.83	0	783184..784560	+	458	19551974	manB	NCgl0714	-	phosphomannomutase/phosphoglucomutase
715	 57.94	0	784635..785642	+	335	19551975	-	NCgl0715	-	hypothetical protein
716	 57.05	0	785643..786827	+	394	19551976	-	NCgl0716	-	phosphomannose isomerase
717	 54.33	0	787167..787952	-	261	19551977	-	NCgl0717	-	hypothetical protein
718	 52.26	0	788196..788549	+	117	19551978	-	NCgl0718	-	hypothetical protein
719	 57.13	0	788660..790096	+	478	19551979	-	NCgl0719	-	S-adenosyl-L-homocysteine hydrolase
720	 60.46	+1	790096..790707	+	203	19551980	-	NCgl0720	-	thymidylate kinase
721	 55.80	0	790732..791412	+	226	19551981	-	NCgl0721	-	two-component system response regulator
722	 56.67	0	791512..793011	+	499	19551982	-	NCgl0722	-	two-component system sensory transduction histidine kinase
723	 58.35	+1	793008..794714	+	568	19551983	-	NCgl0723	-	lipoprotein LpqB
724	 60.07	+1	794714..795304	+	196	23308802	-	NCgl0724	-	hypothetical protein
725	 54.50	0	795448..796113	+	221	19551984	-	NCgl0725	-	ribosome-associated protein Y
726	 56.70	0	796250..798787	+	845	19551985	secA	NCgl0726	-	preprotein translocase subunit SecA
727	 59.12	+1	799284..799694	+	136	19551987	-	NCgl0727	-	hypothetical protein
728	 56.21	0	799697..800203	+	168	19551988	-	NCgl0728	-	hypothetical protein
729	 56.61	0	800205..801089	-	294	19551989	-	NCgl0729	-	hypothetical protein
730	 53.13	0	801187..802479	-	430	19551990	-	NCgl0730	-	3-phosphoshikimate 1-carboxyvinyltransferase
731	 51.60	0	802508..803131	+	207	19551991	-	NCgl0731	-	hypothetical protein
732	 52.83	0	803128..804240	-	370	19551992	-	NCgl0732	-	hypothetical protein
733	 50.89	0	804408..805028	+	206	19551993	-	NCgl0733	-	RNA polymerase sigma factor RpoE
734	 61.69	+1	805532..805792	-	86	19551994	-	NCgl0734	-	hypothetical protein
735	 52.48	0	806318..806740	+	140	19551995	-	NCgl0735	-	hypothetical protein
736	 55.78	0	806737..807939	-	400	19551996	-	NCgl0736	-	hypothetical protein
737	 57.57	0	807943..809217	-	424	23308803	-	NCgl0737	-	putative helicase
738	 50.88	0	809286..809513	+	75	19551998	-	NCgl0738	-	hypothetical protein
739	 58.97	+1	809528..810397	+	289	19551999	-	NCgl0739	-	hypothetical protein
740	 55.12	0	810405..811166	+	253	19552000	-	NCgl0740	-	hypothetical protein
741	 59.59	+1	811170..814220	+	1016	19552001	-	NCgl0741	-	putative helicase
742	 56.86	0	814213..817425	+	1070	19552002	-	NCgl0742	-	putative helicase
743	 57.16	0	817465..818526	+	353	19552003	-	NCgl0743	-	NAD-binding component of Kef-type K+ transport system
744	 53.97	0	818523..819239	+	238	19552004	-	NCgl0744	-	NTP pyrophosphohydrolase
745	 57.54	0	819254..821290	+	678	19552005	-	NCgl0745	-	putative helicase
54.31	MEAN

3.83	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.