IslandPath Analysis: Corynebacterium glutamicum ATCC 13032



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 54.31   STD DEV: 3.83
Corynebacterium glutamicum ATCC 13032, complete genome - 1..3309401
2993 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
595	 44.27	-2	632687..633079	-	130	19551854	-	NCgl0595	-	C50 carotenoid epsilon cyclase
596	 44.00	-2	633076..633525	-	149	19551855	-	NCgl0596	-	C50 carotenoid epsilon cyclase
597	 49.30	-1	633529..635175	-	548	19551856	-	NCgl0597	-	putative phytoene dehydrogenase
598	 45.25	-2	635175..636089	-	304	19551857	-	NCgl0598	-	phytoene synthetase
599	 50.49	0	636086..638224	-	712	19551858	-	NCgl0599	-	RND superfamily drug exporter
600	 45.17	-2	638314..639462	-	382	23308797	-	NCgl0600	-	geranylgeranyl pyrophosphate synthase
601	 48.81	-1	639624..640211	+	195	19551860	-	NCgl0601	-	MarR family transcriptional regulator
602	 48.54	-1	640229..640879	-	216	19551861	-	NCgl0602	-	lipocalin
603	 48.07	-1	640953..642560	+	535	19551862	-	NCgl0603	-	nucleoside-diphosphate-sugar epimerase
604	 46.24	-2	642553..644001	-	482	19551863	-	NCgl0604	-	deoxyribodipyrimidine photolyase
605	 45.90	-2	644026..644781	+	251	19551864	-	NCgl0605	-	cell wall biogenesis glycosyltransferase
606	 56.00	0	645173..647590	-	805	19551865	-	NCgl0606	-	ABC transporter permease
607	 50.83	0	647590..648309	-	239	19551866	-	NCgl0607	-	ABC-type transporter, ATPase component
608	 54.28	0	648437..649114	-	225	19551867	-	NCgl0608	-	ABC-type transporter, permease component
609	 55.12	0	649111..650193	-	360	19551868	-	NCgl0609	-	ABC-type transporter, ATPase component
610	 58.11	0	650389..651288	-	299	19551869	-	NCgl0610	-	ABC-type transporter, periplasmic component
611	 54.42	0	651448..654615	+	1055	19551870	dnaE2	NCgl0611	-	error-prone DNA polymerase
612	 56.00	0	654676..655125	+	149	19551871	-	NCgl0612	-	hypothetical protein
613	 56.14	0	655122..656537	+	471	19551872	-	NCgl0613	-	hypothetical protein
614	 54.61	0	656547..657218	+	223	19551873	-	NCgl0614	-	Mn-dependent transcriptional regulator
615	 52.68	0	657202..658002	-	266	23308798	-	NCgl0615	-	hypothetical protein
616	 55.47	0	658155..658931	+	258	19551875	-	NCgl0616	-	NAD-dependent deacetylase
617	 52.32	0	658933..659427	+	164	19551876	-	NCgl0617	-	cytosine/adenosine deaminase
618	 51.25	0	659543..660541	+	332	19551877	-	NCgl0618	-	ABC-type Fe3+-siderophores transport system, periplasmic component
619	 53.59	0	660647..661120	-	157	19551878	-	NCgl0619	-	SpoU class rRNA methylase
620	 57.31	0	661166..662020	+	284	19551879	-	NCgl0620	-	5,10-methylene-tetrahydrofolate dehydrogenase
621	 53.28	0	662027..662377	+	116	19551880	-	NCgl0621	-	hypothetical protein
622	 52.86	0	662379..663761	-	460	19551881	-	NCgl0622	-	flotillin-like protein
623	 51.76	0	664123..664947	-	274	19551882	-	NCgl0623	-	hypothetical protein
624	 55.82	0	665180..666313	-	377	19551883	metX	NCgl0624	-	homoserine O-acetyltransferase
625	 57.91	0	666457..667770	-	437	19551884	-	NCgl0625	-	O-acetylhomoserine aminocarboxypropyltransferase
626	 53.95	0	668189..670468	+	759	19551885	-	NCgl0626	-	carbon starvation protein, membrane protein
627	 56.03	0	671141..671770	+	209	19551886	-	NCgl0627	-	hypothetical protein
628	 55.79	0	671820..672656	+	278	19551887	-	NCgl0628	-	hypothetical protein
629	 59.89	+1	672665..673579	+	304	23308799	-	NCgl0629	-	PEP phosphonomutase or related enzyme
630	 58.25	+1	673608..674759	+	383	19551889	-	NCgl0630	-	methylcitrate synthase
631	 53.26	0	675079..676122	-	347	19551891	-	NCgl0631	-	malate/L-lactate dehydrogenase
632	 50.62	0	676215..676937	-	240	19551892	-	NCgl0632	-	transcriptional regulator
633	 56.17	0	677044..677748	-	234	19551893	-	NCgl0633	-	hypothetical protein
634	 57.47	0	677828..680044	-	738	19551894	-	NCgl0634	-	monomeric isocitrate dehydrogenase (NADP+)
635	 57.00	0	680128..681027	-	299	19551895	-	NCgl0635	-	hypothetical protein
636	 60.37	+1	681037..681846	-	269	19551896	-	NCgl0636	-	ABC-type transporter, ATPase component
637	 57.34	0	681843..682871	-	342	19551897	-	NCgl0637	-	ABC-type transporter, permease component
638	 57.03	0	682868..683863	-	331	19551898	-	NCgl0638	-	ABC-type transporter, permease component
639	 53.56	0	683873..684925	-	350	19551899	-	NCgl0639	-	ABC-type transporter, periplasmic component
640	 57.57	0	685109..686383	+	424	19551900	-	NCgl0640	-	arabinose efflux permease
641	 55.85	0	686435..687349	+	304	19551901	-	NCgl0641	-	exonuclease III
642	 54.24	0	687351..688010	+	219	19551902	-	NCgl0642	-	hypothetical protein
643	 53.12	0	688147..688338	+	63	19551903	-	NCgl0643	-	hypothetical protein
644	 55.01	0	688913..689890	-	325	19551904	-	NCgl0644	-	ABC-type transporter, periplasmic component
645	 59.13	+1	689914..690696	-	260	19551905	-	NCgl0645	-	ABC-type transporter, ATPase component
646	 56.08	0	690703..691722	-	339	19551906	-	NCgl0646	-	ABC-type transporter, permease component
647	 56.84	0	691882..692919	+	345	19551907	-	NCgl0647	-	tryptophanyl-tRNA synthetase
648	 53.68	0	693028..694113	+	361	19551908	-	NCgl0648	-	hypothetical protein
649	 52.87	0	694172..695077	+	301	19551909	-	NCgl0649	-	hypothetical protein
650	 57.36	0	695074..696384	-	436	19551910	-	NCgl0650	-	D-alanyl-D-alanine carboxypeptidase
651	 58.37	+1	696766..697995	-	409	19551911	-	NCgl0651	-	hypothetical protein
652	 60.16	+1	698062..698922	-	286	19551912	-	NCgl0652	-	hypothetical protein
653	 59.47	+1	698919..699182	-	87	19551913	-	NCgl0653	-	hypothetical protein
654	 58.65	+1	699281..699916	+	211	19551914	upp	NCgl0654	-	uracil phosphoribosyltransferase
655	 58.13	0	700010..700384	+	124	19551915	-	NCgl0655	-	transcriptional regulator
656	 54.68	0	700381..701973	-	530	19551916	-	NCgl0656	-	phosphomannomutase
657	 56.62	0	702081..703265	+	394	19551917	-	NCgl0657	-	metal-dependent amidase/aminoacylase/carboxypeptidase
658	 55.60	0	703405..704814	+	469	19551918	-	NCgl0658	-	flavoprotein disulfide reductase
659	 56.76	0	705211..708633	+	1140	19551919	-	NCgl0659	-	pyruvate carboxylase
660	 55.67	0	708839..709711	+	290	19551920	-	NCgl0660	-	hypothetical protein
661	 48.67	-1	709793..710281	+	162	19551921	-	NCgl0661	-	hypothetical protein
662	 58.59	+1	710517..711605	-	362	19551922	-	NCgl0662	-	G3E family GTPase
663	 58.14	+1	711724..712650	+	308	19551923	-	NCgl0663	-	thioredoxin reductase
664	 55.98	0	712738..714234	+	498	19551924	-	NCgl0664	-	hypothetical protein
665	 58.71	+1	714231..715148	+	305	19551925	-	NCgl0665	-	PEP phosphonomutase or related enzyme
666	 54.62	0	715141..716286	+	381	19551926	-	NCgl0666	-	methylcitrate synthase
667	 57.94	0	716283..716660	-	125	19551927	-	NCgl0667	-	hypothetical protein
668	 55.51	0	716684..718009	-	441	19551928	-	NCgl0668	-	transcriptional regulator
669	 55.19	0	718171..718353	+	60	19551929	-	NCgl0669	-	hypothetical protein
670	 58.67	+1	718577..720352	-	591	19551930	-	NCgl0670	-	acyl-CoA carboxylase
671	 58.50	+1	720544..721449	-	301	19551931	-	NCgl0671	-	thiosulfate sulfurtransferase
672	 56.74	0	721777..722844	+	355	19551932	-	NCgl0672	-	hypothetical protein
673	 53.48	0	722922..723338	-	138	19551933	-	NCgl0673	-	hypothetical protein
674	 53.79	0	723412..725562	+	716	19551934	-	NCgl0674	-	acyltransferase
675	 59.60	+1	725869..726462	-	197	19551935	maf	NCgl0675	-	Maf-like protein
676	 53.82	0	726467..726715	-	82	19551936	-	NCgl0676	-	hypothetical protein
677	 54.71	0	726739..728352	-	537	19551937	-	NCgl0677	-	detergent sensitivity rescuer dtsR2
678	 58.58	+1	728693..730324	-	543	19551938	-	NCgl0678	-	detergent sensitivity rescuer dtsR1
679	 52.35	0	730493..731302	+	269	19551939	-	NCgl0679	-	biotin--protein ligase
680	 53.14	0	731387..731800	+	137	19551940	-	NCgl0680	-	hypothetical protein
681	 57.56	0	731857..733020	+	387	19551941	-	NCgl0681	-	phosphoribosylaminoimidazole carboxylase ATPase subunit
682	 52.78	0	733060..734946	+	628	19551942	-	NCgl0682	-	K+ transporter
683	 49.44	-1	734984..735343	+	119	19551943	-	NCgl0683	-	hypothetical protein
684	 55.62	0	735402..735899	+	165	19551944	-	NCgl0684	-	phosphoribosylaminoimidazole carboxylase catalytic subunit
685	 52.41	0	735899..736354	+	151	19551945	-	NCgl0685	-	hypothetical protein
686	 52.58	0	736413..737207	+	264	19551946	-	NCgl0686	-	hypothetical protein
687	 55.73	0	737213..738529	-	438	19551947	-	NCgl0687	-	nitrilotriacetate monooxygenase
688	 53.18	0	738670..740115	-	481	19551948	-	NCgl0688	-	putative transposase
689	 57.70	0	740225..741016	-	263	19551949	fabG	NCgl0689	-	3-ketoacyl-(acyl-carrier-protein) reductase
690	 42.47	-2	741397..741768	+	123	23308800	-	NCgl0690	-	hypothetical protein
691	 53.79	0	741815..742381	-	188	19551950	-	NCgl0691	-	hypothetical protein
692	 49.65	-1	742409..742831	+	140	19551951	-	NCgl0692	-	hypothetical protein
693	 54.22	0	742828..743052	-	74	19551952	-	NCgl0693	-	hypothetical protein
694	 56.87	0	743064..743900	-	278	19551953	-	NCgl0694	-	ABC-type transporter, permease component
54.31	MEAN

3.83	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.