IslandPath Analysis: Corynebacterium glutamicum ATCC 13032



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 54.31   STD DEV: 3.83
Corynebacterium glutamicum ATCC 13032, complete genome - 1..3309401
2993 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
554	 57.49	0	593935..594261	+	108	19551813	-	NCgl0554	-	hypothetical protein
555	 56.70	0	594293..594583	+	96	19551814	-	NCgl0555	-	hypothetical protein
556	 58.33	+1	594939..595382	+	147	19551815	rplM	NCgl0556	-	50S ribosomal protein L13
557	 58.83	+1	595382..595930	+	182	19551816	rpsI	NCgl0557	-	30S ribosomal protein S9
558	 54.69	0	596109..597452	+	447	19551817	-	NCgl0558	-	phosphomannomutase
559	 54.58	0	597892..598197	+	101	19551818	-	NCgl0559	-	hypothetical protein
560	 54.63	0	598194..599705	+	503	19551819	-	NCgl0560	-	hypothetical protein
561	 53.16	0	599699..599935	+	78	19551820	-	NCgl0561	-	hypothetical protein
562	 57.34	0	600019..600876	-	285	19551821	-	NCgl0562	-	hypothetical protein
563	 55.62	0	600971..602056	+	361	19551822	alr	NCgl0563	-	alanine racemase
564	 54.42	0	602080..602577	+	165	19551823	-	NCgl0564	-	hypothetical protein
565	 54.18	0	602811..604412	+	533	19551824	-	NCgl0565	-	hypothetical protein
566	 55.06	0	604428..605711	+	427	19551825	-	NCgl0566	-	putative aminopeptidase
567	 57.08	0	605718..606395	+	225	19551826	-	NCgl0567	-	hypothetical protein
568	 55.10	0	606392..606901	+	169	19551827	-	NCgl0568	-	acetyltransferase
569	 56.81	0	606905..607939	+	344	19551828	-	NCgl0569	-	O-sialoglycoprotein endopeptidase
570	 56.93	0	607958..609682	+	574	19551829	-	NCgl0570	-	hypothetical protein
571	 55.32	0	609756..610178	+	140	19551830	-	NCgl0571	-	hypothetical protein
572	 55.00	0	610348..610647	+	99	23308796	groES	NCgl0572	-	co-chaperonin GroES
573	 55.78	0	610659..612275	+	538	19551832	groEL	NCgl0573	-	chaperonin GroEL
574	 59.00	+1	612415..612714	-	99	19551833	-	NCgl0574	-	hypothetical protein
575	 52.38	0	613156..613722	+	188	19551834	-	NCgl0575	-	RNA polymerase sigma factor SigD
576	 55.10	0	613722..614750	+	342	19551835	-	NCgl0576	-	hypothetical protein
577	 51.54	0	614800..615189	-	129	19551836	-	NCgl0577	-	hypothetical protein
578	 55.49	0	615336..616856	+	506	19551837	-	NCgl0578	-	inositol-5-monophosphate dehydrogenase
579	 55.47	0	616973..618097	+	374	19551838	-	NCgl0579	-	inositol-5-monophosphate dehydrogenase
580	 56.95	0	618090..618995	-	301	19551839	-	NCgl0580	-	hypothetical protein
581	 58.99	+1	619086..619997	+	303	19551840	-	NCgl0581	-	transcriptional regulator
582	 59.41	+1	620004..621575	+	523	19551841	guaA	NCgl0582	-	bifunctional GMP synthase/glutamine amidotransferase protein
583	 52.25	0	621717..622160	+	147	19551842	-	NCgl0583	-	hypothetical protein
584	 53.44	0	622457..623635	-	392	19551843	-	NCgl0584	-	hypothetical protein
585	 60.91	+1	623884..624942	+	352	19551844	-	NCgl0585	-	two-component system sensor kinase
586	 58.30	+1	624985..625677	+	230	19551845	-	NCgl0586	-	two-component system response regulator
587	 50.15	-1	625677..626003	+	108	19551846	-	NCgl0587	-	hypothetical protein
588	 54.50	0	626067..626510	-	147	19551847	-	NCgl0588	-	hypothetical protein
589	 50.12	-1	626574..627395	-	273	19551848	-	NCgl0589	-	hypothetical protein
590	 55.30	0	627763..628554	+	263	19551849	-	NCgl0590	-	hypothetical protein
591	 60.09	+1	628563..630143	+	526	19551850	-	NCgl0591	-	hypothetical protein
592	 55.09	0	630148..630786	-	212	19551851	-	NCgl0592	-	hypothetical protein
593	 54.05	0	630949..631812	+	287	19551852	-	NCgl0593	-	hypothetical protein
594	 45.02	-2	631821..632684	-	287	19551853	ubiA	NCgl0594	-	prenyltransferase
595	 44.27	-2	632687..633079	-	130	19551854	-	NCgl0595	-	C50 carotenoid epsilon cyclase
596	 44.00	-2	633076..633525	-	149	19551855	-	NCgl0596	-	C50 carotenoid epsilon cyclase
597	 49.30	-1	633529..635175	-	548	19551856	-	NCgl0597	-	putative phytoene dehydrogenase
598	 45.25	-2	635175..636089	-	304	19551857	-	NCgl0598	-	phytoene synthetase
599	 50.49	0	636086..638224	-	712	19551858	-	NCgl0599	-	RND superfamily drug exporter
600	 45.17	-2	638314..639462	-	382	23308797	-	NCgl0600	-	geranylgeranyl pyrophosphate synthase
601	 48.81	-1	639624..640211	+	195	19551860	-	NCgl0601	-	MarR family transcriptional regulator
602	 48.54	-1	640229..640879	-	216	19551861	-	NCgl0602	-	lipocalin
603	 48.07	-1	640953..642560	+	535	19551862	-	NCgl0603	-	nucleoside-diphosphate-sugar epimerase
604	 46.24	-2	642553..644001	-	482	19551863	-	NCgl0604	-	deoxyribodipyrimidine photolyase
605	 45.90	-2	644026..644781	+	251	19551864	-	NCgl0605	-	cell wall biogenesis glycosyltransferase
606	 56.00	0	645173..647590	-	805	19551865	-	NCgl0606	-	ABC transporter permease
607	 50.83	0	647590..648309	-	239	19551866	-	NCgl0607	-	ABC-type transporter, ATPase component
608	 54.28	0	648437..649114	-	225	19551867	-	NCgl0608	-	ABC-type transporter, permease component
609	 55.12	0	649111..650193	-	360	19551868	-	NCgl0609	-	ABC-type transporter, ATPase component
610	 58.11	0	650389..651288	-	299	19551869	-	NCgl0610	-	ABC-type transporter, periplasmic component
611	 54.42	0	651448..654615	+	1055	19551870	dnaE2	NCgl0611	-	error-prone DNA polymerase
612	 56.00	0	654676..655125	+	149	19551871	-	NCgl0612	-	hypothetical protein
613	 56.14	0	655122..656537	+	471	19551872	-	NCgl0613	-	hypothetical protein
614	 54.61	0	656547..657218	+	223	19551873	-	NCgl0614	-	Mn-dependent transcriptional regulator
615	 52.68	0	657202..658002	-	266	23308798	-	NCgl0615	-	hypothetical protein
616	 55.47	0	658155..658931	+	258	19551875	-	NCgl0616	-	NAD-dependent deacetylase
617	 52.32	0	658933..659427	+	164	19551876	-	NCgl0617	-	cytosine/adenosine deaminase
618	 51.25	0	659543..660541	+	332	19551877	-	NCgl0618	-	ABC-type Fe3+-siderophores transport system, periplasmic component
619	 53.59	0	660647..661120	-	157	19551878	-	NCgl0619	-	SpoU class rRNA methylase
620	 57.31	0	661166..662020	+	284	19551879	-	NCgl0620	-	5,10-methylene-tetrahydrofolate dehydrogenase
621	 53.28	0	662027..662377	+	116	19551880	-	NCgl0621	-	hypothetical protein
622	 52.86	0	662379..663761	-	460	19551881	-	NCgl0622	-	flotillin-like protein
623	 51.76	0	664123..664947	-	274	19551882	-	NCgl0623	-	hypothetical protein
624	 55.82	0	665180..666313	-	377	19551883	metX	NCgl0624	-	homoserine O-acetyltransferase
625	 57.91	0	666457..667770	-	437	19551884	-	NCgl0625	-	O-acetylhomoserine aminocarboxypropyltransferase
626	 53.95	0	668189..670468	+	759	19551885	-	NCgl0626	-	carbon starvation protein, membrane protein
627	 56.03	0	671141..671770	+	209	19551886	-	NCgl0627	-	hypothetical protein
628	 55.79	0	671820..672656	+	278	19551887	-	NCgl0628	-	hypothetical protein
629	 59.89	+1	672665..673579	+	304	23308799	-	NCgl0629	-	PEP phosphonomutase or related enzyme
630	 58.25	+1	673608..674759	+	383	19551889	-	NCgl0630	-	methylcitrate synthase
631	 53.26	0	675079..676122	-	347	19551891	-	NCgl0631	-	malate/L-lactate dehydrogenase
632	 50.62	0	676215..676937	-	240	19551892	-	NCgl0632	-	transcriptional regulator
633	 56.17	0	677044..677748	-	234	19551893	-	NCgl0633	-	hypothetical protein
634	 57.47	0	677828..680044	-	738	19551894	-	NCgl0634	-	monomeric isocitrate dehydrogenase (NADP+)
635	 57.00	0	680128..681027	-	299	19551895	-	NCgl0635	-	hypothetical protein
636	 60.37	+1	681037..681846	-	269	19551896	-	NCgl0636	-	ABC-type transporter, ATPase component
637	 57.34	0	681843..682871	-	342	19551897	-	NCgl0637	-	ABC-type transporter, permease component
638	 57.03	0	682868..683863	-	331	19551898	-	NCgl0638	-	ABC-type transporter, permease component
639	 53.56	0	683873..684925	-	350	19551899	-	NCgl0639	-	ABC-type transporter, periplasmic component
640	 57.57	0	685109..686383	+	424	19551900	-	NCgl0640	-	arabinose efflux permease
641	 55.85	0	686435..687349	+	304	19551901	-	NCgl0641	-	exonuclease III
642	 54.24	0	687351..688010	+	219	19551902	-	NCgl0642	-	hypothetical protein
643	 53.12	0	688147..688338	+	63	19551903	-	NCgl0643	-	hypothetical protein
644	 55.01	0	688913..689890	-	325	19551904	-	NCgl0644	-	ABC-type transporter, periplasmic component
645	 59.13	+1	689914..690696	-	260	19551905	-	NCgl0645	-	ABC-type transporter, ATPase component
646	 56.08	0	690703..691722	-	339	19551906	-	NCgl0646	-	ABC-type transporter, permease component
647	 56.84	0	691882..692919	+	345	19551907	-	NCgl0647	-	tryptophanyl-tRNA synthetase
648	 53.68	0	693028..694113	+	361	19551908	-	NCgl0648	-	hypothetical protein
649	 52.87	0	694172..695077	+	301	19551909	-	NCgl0649	-	hypothetical protein
650	 57.36	0	695074..696384	-	436	19551910	-	NCgl0650	-	D-alanyl-D-alanine carboxypeptidase
651	 58.37	+1	696766..697995	-	409	19551911	-	NCgl0651	-	hypothetical protein
652	 60.16	+1	698062..698922	-	286	19551912	-	NCgl0652	-	hypothetical protein
653	 59.47	+1	698919..699182	-	87	19551913	-	NCgl0653	-	hypothetical protein
54.31	MEAN

3.83	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.