IslandPath Analysis: Corynebacterium glutamicum ATCC 13032



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 54.31   STD DEV: 3.83
Corynebacterium glutamicum ATCC 13032, complete genome - 1..3309401
2993 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
340	 48.02	-1	366877..368646	+	589	19551596	-	NCgl0340	-	nucleoside-diphosphate sugar epimerase
341	 45.68	-2	368647..369804	+	385	19551597	-	NCgl0341	-	pyridoxal phosphate-dependent enzyme
342	 42.11	-2	369794..370408	+	204	19551598	-	NCgl0342	-	sugar transferase involved in lipopolysaccharide synthesis
343	 42.94	-2	370892..371776	+	294	19551599	-	NCgl0343	-	glycosyltransferase
344	 42.10	-2	371929..373422	+	497	19551600	-	NCgl0344	-	O-antigen and teichoic acid membrane export protein
345	 45.71	-2	373500..374816	+	438	19551601	-	NCgl0345	-	UDP-N-acetylglucosamine enolpyruvyl transferase
346	 43.45	-2	374833..375840	+	335	19551602	-	NCgl0346	-	UDP-N-acetylmuramate dehydrogenase
347	 41.14	-2	375842..376879	+	345	19551603	-	NCgl0347	-	cell wall biogenesis glycosyltransferase
348	 50.98	0	377683..377835	+	50	19551604	-	NCgl0348	-	putative transposase
349	 43.65	-2	378665..379837	-	390	23308790	-	NCgl0349	-	hypothetical protein
350	 44.48	-2	379847..380842	-	331	19551607	-	NCgl0350	-	acyltransferase
351	 41.75	-2	381948..383111	+	387	19551608	-	NCgl0351	-	UDP-glucose 6-dehydrogenase
352	 41.34	-2	383979..385190	-	403	23308791	-	NCgl0352	-	hypothetical protein
353	 43.27	-2	385371..386195	-	274	19551609	-	NCgl0353	-	cell wall biogenesis glycosyltransferase
354	 45.99	-2	386556..387203	+	215	19551610	-	NCgl0354	-	acetyltransferase
355	 49.93	-1	387692..389101	+	469	19551612	-	NCgl0355	-	dihydrolipoamide dehydrogenase
356	 48.58	-1	389293..390171	+	292	19551613	-	NCgl0356	-	UDP-glucose pyrophosphorylase
357	 49.56	-1	390161..390733	+	190	19551614	-	NCgl0357	-	hypothetical protein
358	 62.06	+2	390784..392193	-	469	19551615	-	NCgl0358	-	transcriptional regulator
359	 55.94	0	392705..393478	+	257	19551616	-	NCgl0359	-	hypothetical protein
360	 59.74	+1	393495..395516	+	673	19551617	sdhA	NCgl0360	-	succinate dehydrogenase flavoprotein subunit
361	 59.07	+1	395516..396265	+	249	19551618	-	NCgl0361	-	succinate dehydrogenase/fumarate reductase iron-sulfur subunit
362	 57.58	0	396324..396653	+	109	19551619	-	NCgl0362	-	hypothetical protein
363	 56.92	0	396741..396935	+	64	19551620	-	NCgl0363	-	hypothetical protein
364	 57.57	0	397229..398206	-	325	19551621	-	NCgl0364	-	hypothetical protein
365	 56.06	0	398329..399582	+	417	19551622	-	NCgl0365	-	hypothetical protein
366	 52.25	0	399598..400020	+	140	19551623	-	NCgl0366	-	hypothetical protein
367	 51.63	0	400039..400344	+	101	19551624	-	NCgl0367	-	hypothetical protein
368	 49.26	-1	400545..401153	+	202	19551625	-	NCgl0368	-	transcriptional regulator
369	 53.52	0	401150..402799	+	549	19551626	-	NCgl0369	-	major facilitator superfamily permease
370	 55.72	0	402799..404433	+	544	19551627	-	NCgl0370	-	major facilitator superfamily permease
371	 52.35	0	404505..405419	-	304	19551628	purU	NCgl0371	-	formyltetrahydrofolate deformylase
372	 54.22	0	405474..406148	+	224	19551629	-	NCgl0372	-	deoxyribose-phosphate aldolase
373	 53.79	0	406550..407419	+	289	19551630	-	NCgl0373	-	hypothetical protein
374	 54.79	0	407406..407708	-	100	19551631	-	NCgl0374	-	hypothetical protein
375	 58.42	+1	407708..409975	-	755	19551632	-	NCgl0375	-	cation transport ATPase
376	 52.76	0	410024..410476	-	150	19551633	-	NCgl0376	-	hypothetical protein
377	 58.36	+1	410707..412548	+	613	19551634	-	NCgl0377	-	hypothetical protein
378	 56.39	0	412557..413636	+	359	19551635	-	NCgl0378	-	ABC-type transporter, periplasmic component
379	 59.61	+1	413637..414713	+	358	19551636	-	NCgl0379	-	ABC-type transporter, permease component
380	 56.25	0	414714..415529	+	271	19551637	-	NCgl0380	-	ABC-type transporter, ATPase component
381	 56.04	0	415643..416602	+	319	19551638	-	NCgl0381	-	hypothetical protein
382	 51.67	0	416603..417442	+	279	19551639	-	NCgl0382	-	hypothetical protein
383	 53.51	0	417542..418354	-	270	19551640	-	NCgl0383	-	hypothetical protein
384	 59.68	+1	418438..419253	-	271	19551641	-	NCgl0384	-	hypothetical protein
385	 57.74	0	419254..419757	-	167	19551642	-	NCgl0385	-	hypothetical protein
386	 61.88	+1	419782..420888	+	368	19551643	murB	NCgl0386	-	UDP-N-acetylenolpyruvoylglucosamine reductase
387	 55.56	0	420881..421519	+	212	19551644	-	NCgl0387	-	hypothetical protein
388	 58.06	0	422087..423793	-	568	19551645	-	NCgl0388	-	acyl-CoA synthetase
389	 57.52	0	423878..425134	+	418	19551646	-	NCgl0389	-	glycosyltransferase
390	 58.23	+1	425177..425923	+	248	19551647	-	NCgl0390	-	phosphoglyceromutase
391	 57.62	0	426015..427175	+	386	19551648	-	NCgl0391	-	signal transduction histidine kinase
392	 55.65	0	427172..427870	+	232	19551649	-	NCgl0392	-	two-component system, response regulators
393	 48.75	-1	428561..429442	+	293	19551650	-	NCgl0393	-	hypothetical protein
394	 59.74	+1	429435..432005	-	856	19551651	-	NCgl0394	-	ABC-type transport system permease component
395	 53.75	0	432123..433028	-	301	19551653	-	NCgl0395	-	hypothetical protein
396	 59.10	+1	433146..433991	+	281	19551654	-	NCgl0396	-	exopolyphosphatase
397	 58.74	+1	434019..434825	+	268	19551655	-	NCgl0397	-	hypothetical protein
398	 57.30	0	434877..435698	+	273	19551656	-	NCgl0398	-	pyrroline-5-carboxylate reductase
399	 54.17	0	435949..436140	+	63	19551657	-	NCgl0399	-	hypothetical protein
400	 60.02	+1	436977..438044	-	355	19551659	-	NCgl0400	-	phosphoserine phosphatase
401	 49.00	-1	438179..438427	+	82	19551661	-	NCgl0401	-	hypothetical protein
402	 55.63	0	438513..439907	+	464	161486714	hemA	NCgl0402	-	glutamyl-tRNA reductase
403	 62.60	+2	439909..440817	+	302	19551663	hemC	NCgl0403	-	porphobilinogen deaminase
404	 49.12	-1	441310..441594	+	94	19551664	-	NCgl0404	-	hypothetical protein
405	 54.24	0	441598..442482	-	294	19551665	-	NCgl0405	-	transcriptional regulator
406	 54.42	0	442758..444161	+	467	19551666	-	NCgl0406	-	major facilitator superfamily permease
407	 54.98	0	444185..446041	+	618	19551667	-	NCgl0407	-	sugar phosphate isomerase/epimerase
408	 57.31	0	446087..446524	+	145	19551668	-	NCgl0408	-	3-dehydroquinate dehydratase
409	 61.85	+1	446538..447389	+	283	19551669	aroE	NCgl0409	-	shikimate 5-dehydrogenase
410	 51.81	0	447395..447670	-	91	19551670	-	NCgl0410	-	hypothetical protein
411	 59.83	+1	448127..449179	-	350	19551671	-	NCgl0411	-	ABC-type transporter, ATPase component
412	 54.63	0	449180..450757	-	525	19551672	-	NCgl0412	-	ABC-type transporter permease component
413	 54.35	0	450834..451913	-	359	19551673	-	NCgl0413	-	ABC-type transporter periplasmic component
414	 56.48	0	452637..454433	+	598	19551674	-	NCgl0414	-	uroporphyrinogen-III synthase/methylase
415	 54.78	0	454450..454878	+	142	19551675	-	NCgl0415	-	hypothetical protein
416	 55.29	0	454967..455986	+	339	19551676	-	NCgl0416	-	delta-aminolevulinic acid dehydratase
417	 50.77	0	456016..456600	+	194	19551677	-	NCgl0417	-	hypothetical protein
418	 51.85	0	456641..457153	+	170	19551678	-	NCgl0418	-	hypothetical protein
419	 54.15	0	457267..459903	+	878	19551679	-	NCgl0419	-	cation transport ATPase
420	 52.62	0	459972..461096	+	374	19551680	hemE	NCgl0420	-	uroporphyrinogen decarboxylase
421	 59.47	+1	461112..462458	+	448	19551681	-	NCgl0421	-	protoporphyrinogen oxidase
422	 57.55	0	462566..463870	+	434	19551682	-	NCgl0422	-	glutamate-1-semialdehyde aminotransferase
423	 57.14	0	463867..464475	+	202	19551683	-	NCgl0423	-	phosphoglycerate mutase/fructose-2,6-bisphosphatase
424	 54.49	0	464482..465105	+	207	19551684	-	NCgl0424	-	thiol-disulfide isomerase or thioredoxin
425	 58.74	+1	465106..465912	+	268	19551685	-	NCgl0425	-	cytochrome C biogenesis protein
426	 58.00	0	465949..467574	+	541	19551686	-	NCgl0426	-	cytochrome C biosynthesis protein ResB
427	 55.72	0	467648..468661	+	337	19551687	-	NCgl0427	-	cytochrome C assembly protein
428	 55.60	0	469370..470173	+	267	19551688	-	NCgl0428	-	hypothetical protein
429	 53.16	0	470184..470657	+	157	19551689	-	NCgl0429	-	putative YjgF translation initiation inhibitor
430	 52.50	0	470654..471013	-	119	19551690	-	NCgl0430	-	ArsR family transcriptional regulator
431	 50.83	0	471118..471420	-	100	19551691	-	NCgl0431	-	hypothetical protein
432	 55.16	0	471599..471850	+	83	19551692	-	NCgl0432	-	hypothetical protein
433	 58.86	+1	471912..472808	-	298	19551693	-	NCgl0433	-	1,4-dihydroxy-2-naphthoate octaprenyltransferase
434	 55.48	0	472948..473814	+	288	19551694	-	NCgl0434	-	hypothetical protein
435	 52.87	0	473811..474941	-	376	19551695	-	NCgl0435	-	O-succinylbenzoic acid--CoA ligase
436	 57.11	0	474994..475401	-	135	19551696	-	NCgl0436	-	hypothetical protein
437	 56.11	0	475486..477048	-	520	19551697	-	NCgl0437	-	ketoglutarate semialdehyde dehydrogenase
438	 55.84	0	477045..477995	-	316	19551698	-	NCgl0438	-	5-dehydro-4-deoxyglucarate dehydratase
439	 51.53	0	478089..478973	-	294	19551699	-	NCgl0439	-	transcriptional regulator
54.31	MEAN

3.83	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.