IslandPathversion 1.0

IslandPath Analysis: Corynebacterium glutamicum ATCC 13032



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 54.31 STD DEV: 3.83
Corynebacterium glutamicum ATCC 13032, complete genome - 1..3309401
2993 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
307	 57.94	0	328283..329542	+	419	23308788	-	NCgl0307	-	DNA polymerase III subunit delta'
308	 47.43	-1	329933..330379	+	148	19551563	-	NCgl0308	-	uncharacterized phage-associated protein
309	 51.24	0	330973..331536	+	187	19551565	-	NCgl0309	-	putative adenylate kinase
310	 55.71	0	331552..332436	+	294	19551566	-	NCgl0310	-	23S RNA-specific pseudouridylate synthase
311	 56.22	0	332919..334565	+	548	19551567	-	NCgl0311	-	beta-glucosidase-related glycosidase
312	 54.66	0	334549..334956	+	135	19551568	-	NCgl0312	-	hypothetical protein
313	 55.92	0	335009..336115	+	368	19551569	-	NCgl0313	-	class III Zn-dependent alcohol dehydrogenase
314	 53.14	0	336116..336751	+	211	19551570	-	NCgl0314	-	Zn-dependent hydrolase or glyoxylase
315	 54.02	0	336781..337452	+	223	23308789	-	NCgl0315	-	dehydrogenase
316	 52.55	0	337539..338771	+	410	19551572	-	NCgl0316	-	major facilitator superfamily permease
317	 55.98	0	338793..339728	+	311	19551573	-	NCgl0317	-	nucleoside-diphosphate-sugar epimerase
318	 55.82	0	340192..340569	-	125	19551574	-	NCgl0318	-	hypothetical protein
319	 55.56	0	340566..341276	-	236	19551575	-	NCgl0319	-	glycosyltransferase involved in cell wall biogenesis
320	 59.82	+1	341356..342378	+	340	19551576	-	NCgl0320	-	hypothetical protein
321	 53.56	0	342417..343454	+	345	19551577	-	NCgl0321	-	glycosyltransferase
322	 56.02	0	343636..345720	+	694	19551578	-	NCgl0322	-	5'-nucleotidase/2',3'-cyclic phosphodiesterase or related esterase
323	 42.94	-2	346107..346460	-	117	19551579	-	NCgl0323	-	hypothetical protein
324	 56.31	0	346958..348019	-	353	19551580	-	NCgl0324	-	Zn-dependent alcohol dehydrogenase
325	 54.55	0	348095..348952	-	285	19551581	-	NCgl0325	-	dTDP-glucose pyrophosphorylase
326	 59.10	+1	348949..350310	-	453	19551582	-	NCgl0326	-	dTDP-4-dehydrorhamnose 3,5-epimerase or related enzyme
327	 54.22	0	350310..351329	-	339	19551583	-	NCgl0327	-	dTDP-D-glucose 4,6-dehydratase
328	 54.64	0	351367..351948	-	193	19551584	-	NCgl0328	-	nitroreductase
329	 50.53	0	352693..353640	+	315	19551585	-	NCgl0329	-	periplasmic component of ABC-type Fe3+-siderophore transport system
330	 46.57	-2	353746..354387	-	213	19551586	-	NCgl0330	-	hypothetical protein
331	 56.67	0	354596..355846	-	416	19551587	-	NCgl0331	-	hypothetical protein
332	 59.80	+1	355846..357228	-	460	19551588	-	NCgl0332	-	aminopeptidase N
333	 58.30	+1	357234..359240	-	668	19551589	-	NCgl0333	-	serine protease
334	 60.39	+1	359759..360316	-	185	19551590	-	NCgl0334	-	hypothetical protein
335	 47.06	-1	360811..361881	-	356	19551591	-	NCgl0335	-	hypothetical protein
336	 55.56	0	362054..363151	-	365	19551592	-	NCgl0336	-	esterase
337	 51.01	0	363824..365260	+	478	19551593	-	NCgl0337	-	putative ATPase involved in chromosome partitioning
338	 48.51	-1	365250..365855	+	201	19551594	-	NCgl0338	-	protein-tyrosine-phosphatase
339	 50.05	-1	365927..366841	+	304	19551595	-	NCgl0339	-	hypothetical protein
340	 48.02	-1	366877..368646	+	589	19551596	-	NCgl0340	-	nucleoside-diphosphate sugar epimerase
341	 45.68	-2	368647..369804	+	385	19551597	-	NCgl0341	-	pyridoxal phosphate-dependent enzyme
342	 42.11	-2	369794..370408	+	204	19551598	-	NCgl0342	-	sugar transferase involved in lipopolysaccharide synthesis
343	 42.94	-2	370892..371776	+	294	19551599	-	NCgl0343	-	glycosyltransferase
344	 42.10	-2	371929..373422	+	497	19551600	-	NCgl0344	-	O-antigen and teichoic acid membrane export protein
345	 45.71	-2	373500..374816	+	438	19551601	-	NCgl0345	-	UDP-N-acetylglucosamine enolpyruvyl transferase
346	 43.45	-2	374833..375840	+	335	19551602	-	NCgl0346	-	UDP-N-acetylmuramate dehydrogenase
347	 41.14	-2	375842..376879	+	345	19551603	-	NCgl0347	-	cell wall biogenesis glycosyltransferase
348	 50.98	0	377683..377835	+	50	19551604	-	NCgl0348	-	putative transposase
349	 43.65	-2	378665..379837	-	390	23308790	-	NCgl0349	-	hypothetical protein
350	 44.48	-2	379847..380842	-	331	19551607	-	NCgl0350	-	acyltransferase
351	 41.75	-2	381948..383111	+	387	19551608	-	NCgl0351	-	UDP-glucose 6-dehydrogenase
352	 41.34	-2	383979..385190	-	403	23308791	-	NCgl0352	-	hypothetical protein
353	 43.27	-2	385371..386195	-	274	19551609	-	NCgl0353	-	cell wall biogenesis glycosyltransferase
354	 45.99	-2	386556..387203	+	215	19551610	-	NCgl0354	-	acetyltransferase
355	 49.93	-1	387692..389101	+	469	19551612	-	NCgl0355	-	dihydrolipoamide dehydrogenase
356	 48.58	-1	389293..390171	+	292	19551613	-	NCgl0356	-	UDP-glucose pyrophosphorylase
357	 49.56	-1	390161..390733	+	190	19551614	-	NCgl0357	-	hypothetical protein
358	 62.06	+2	390784..392193	-	469	19551615	-	NCgl0358	-	transcriptional regulator
359	 55.94	0	392705..393478	+	257	19551616	-	NCgl0359	-	hypothetical protein
360	 59.74	+1	393495..395516	+	673	19551617	sdhA	NCgl0360	-	succinate dehydrogenase flavoprotein subunit
361	 59.07	+1	395516..396265	+	249	19551618	-	NCgl0361	-	succinate dehydrogenase/fumarate reductase iron-sulfur subunit
362	 57.58	0	396324..396653	+	109	19551619	-	NCgl0362	-	hypothetical protein
363	 56.92	0	396741..396935	+	64	19551620	-	NCgl0363	-	hypothetical protein
364	 57.57	0	397229..398206	-	325	19551621	-	NCgl0364	-	hypothetical protein
365	 56.06	0	398329..399582	+	417	19551622	-	NCgl0365	-	hypothetical protein
366	 52.25	0	399598..400020	+	140	19551623	-	NCgl0366	-	hypothetical protein
367	 51.63	0	400039..400344	+	101	19551624	-	NCgl0367	-	hypothetical protein
368	 49.26	-1	400545..401153	+	202	19551625	-	NCgl0368	-	transcriptional regulator
369	 53.52	0	401150..402799	+	549	19551626	-	NCgl0369	-	major facilitator superfamily permease
370	 55.72	0	402799..404433	+	544	19551627	-	NCgl0370	-	major facilitator superfamily permease
371	 52.35	0	404505..405419	-	304	19551628	purU	NCgl0371	-	formyltetrahydrofolate deformylase
372	 54.22	0	405474..406148	+	224	19551629	-	NCgl0372	-	deoxyribose-phosphate aldolase
373	 53.79	0	406550..407419	+	289	19551630	-	NCgl0373	-	hypothetical protein
374	 54.79	0	407406..407708	-	100	19551631	-	NCgl0374	-	hypothetical protein
375	 58.42	+1	407708..409975	-	755	19551632	-	NCgl0375	-	cation transport ATPase
376	 52.76	0	410024..410476	-	150	19551633	-	NCgl0376	-	hypothetical protein
377	 58.36	+1	410707..412548	+	613	19551634	-	NCgl0377	-	hypothetical protein
378	 56.39	0	412557..413636	+	359	19551635	-	NCgl0378	-	ABC-type transporter, periplasmic component
379	 59.61	+1	413637..414713	+	358	19551636	-	NCgl0379	-	ABC-type transporter, permease component
380	 56.25	0	414714..415529	+	271	19551637	-	NCgl0380	-	ABC-type transporter, ATPase component
381	 56.04	0	415643..416602	+	319	19551638	-	NCgl0381	-	hypothetical protein
382	 51.67	0	416603..417442	+	279	19551639	-	NCgl0382	-	hypothetical protein
383	 53.51	0	417542..418354	-	270	19551640	-	NCgl0383	-	hypothetical protein
384	 59.68	+1	418438..419253	-	271	19551641	-	NCgl0384	-	hypothetical protein
385	 57.74	0	419254..419757	-	167	19551642	-	NCgl0385	-	hypothetical protein
386	 61.88	+1	419782..420888	+	368	19551643	murB	NCgl0386	-	UDP-N-acetylenolpyruvoylglucosamine reductase
387	 55.56	0	420881..421519	+	212	19551644	-	NCgl0387	-	hypothetical protein
388	 58.06	0	422087..423793	-	568	19551645	-	NCgl0388	-	acyl-CoA synthetase
389	 57.52	0	423878..425134	+	418	19551646	-	NCgl0389	-	glycosyltransferase
390	 58.23	+1	425177..425923	+	248	19551647	-	NCgl0390	-	phosphoglyceromutase
391	 57.62	0	426015..427175	+	386	19551648	-	NCgl0391	-	signal transduction histidine kinase
392	 55.65	0	427172..427870	+	232	19551649	-	NCgl0392	-	two-component system, response regulators
393	 48.75	-1	428561..429442	+	293	19551650	-	NCgl0393	-	hypothetical protein
394	 59.74	+1	429435..432005	-	856	19551651	-	NCgl0394	-	ABC-type transport system permease component
395	 53.75	0	432123..433028	-	301	19551653	-	NCgl0395	-	hypothetical protein
396	 59.10	+1	433146..433991	+	281	19551654	-	NCgl0396	-	exopolyphosphatase
397	 58.74	+1	434019..434825	+	268	19551655	-	NCgl0397	-	hypothetical protein
398	 57.30	0	434877..435698	+	273	19551656	-	NCgl0398	-	pyrroline-5-carboxylate reductase
399	 54.17	0	435949..436140	+	63	19551657	-	NCgl0399	-	hypothetical protein
400	 60.02	+1	436977..438044	-	355	19551659	-	NCgl0400	-	phosphoserine phosphatase
401	 49.00	-1	438179..438427	+	82	19551661	-	NCgl0401	-	hypothetical protein
402	 55.63	0	438513..439907	+	464	161486714	hemA	NCgl0402	-	glutamyl-tRNA reductase
403	 62.60	+2	439909..440817	+	302	19551663	hemC	NCgl0403	-	porphobilinogen deaminase
404	 49.12	-1	441310..441594	+	94	19551664	-	NCgl0404	-	hypothetical protein
405	 54.24	0	441598..442482	-	294	19551665	-	NCgl0405	-	transcriptional regulator
406	 54.42	0	442758..444161	+	467	19551666	-	NCgl0406	-	major facilitator superfamily permease
54.31	MEAN

3.83	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.