IslandPathversion 1.0

IslandPath Analysis: Corynebacterium glutamicum ATCC 13032



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 54.31 STD DEV: 3.83
Corynebacterium glutamicum ATCC 13032, complete genome - 1..3309401
2993 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
266	 55.92	0	286382..287860	+	492	19551521	-	NCgl0266	-	hypothetical protein
267	 46.37	-2	287963..288829	-	288	19551522	-	NCgl0267	-	hypothetical protein
268	 58.74	+1	289128..289796	-	222	19551523	-	NCgl0268	-	two-component system, response regulator
269	 54.08	0	289774..291243	-	489	19551524	-	NCgl0269	-	two-component system, sensory transduction histidine kinase
270	 50.41	-1	291270..291755	-	161	19551525	-	NCgl0270	-	hypothetical protein
271	 51.05	0	291800..292420	+	206	19551526	-	NCgl0271	-	uncharacterized membrane-associated protein
272	 55.45	0	292594..293502	-	302	19551527	-	NCgl0272	-	phosphohydrolase
273	 53.07	0	293539..293994	+	151	19551528	-	NCgl0273	-	hypothetical protein
274	 55.65	0	294001..296388	-	795	19551529	-	NCgl0274	-	membrane carboxypeptidase
275	 56.70	0	297055..297405	+	116	19551530	-	NCgl0275	-	putative regulatory protein
276	 50.30	-1	297622..297786	+	54	19551531	-	NCgl0276	-	hypothetical protein
277	 56.93	0	297792..298253	+	153	19551532	-	NCgl0277	-	putative translation initiation inhibitor
278	 56.27	0	298329..299684	-	451	23308785	-	NCgl0278	-	major facilitator superfamily permease
279	 54.26	0	299723..301261	-	512	19551534	-	NCgl0279	-	acyl-CoA synthetase
280	 52.13	0	301509..302024	-	171	19551535	-	NCgl0280	-	ranscriptional regulator
281	 56.62	0	302167..303102	+	311	19551536	-	NCgl0281	-	dehydrogenase
282	 54.07	0	303133..304077	+	314	19551537	-	NCgl0282	-	metal-dependent hydrolase of the TIM-barrel fold
283	 54.14	0	304070..305266	+	398	19551538	-	NCgl0283	-	acyl-CoA dehydrogenase
284	 58.44	+1	305288..305761	+	157	19551539	-	NCgl0284	-	acyl dehydratase
285	 54.96	0	305858..306703	+	281	19551540	-	NCgl0285	-	Zn-dependent hydrolase
286	 59.36	+1	306779..307462	-	227	19551541	-	NCgl0286	-	cAMP-binding domain-containing protein
287	 48.92	-1	307724..307909	-	61	19551542	-	NCgl0287	-	hypothetical protein
288	 55.43	0	307955..308737	+	260	19551543	-	NCgl0288	-	EndoIII-related endonuclease
289	 60.61	+1	308745..309305	+	186	19551544	-	NCgl0289	-	thiol-disulfide isomerase
290	 60.48	+1	309298..310041	+	247	19551545	-	NCgl0290	-	NTP pyrophosphohydrolase
291	 59.23	+1	310132..311328	+	398	19551546	-	NCgl0291	-	trypsin-like serine protease
292	 60.34	+1	311896..312891	-	331	19551547	-	NCgl0292	-	hydrolase or acyltransferase
293	 56.70	0	312906..313457	-	183	19551548	-	NCgl0293	-	hypothetical protein
294	 57.65	0	313622..314464	-	280	19551549	-	NCgl0294	-	phosphoserine phosphatase
295	 56.87	0	314944..316005	+	353	19551550	-	NCgl0295	-	hypothetical protein
296	 58.73	+1	316002..317135	+	377	23308786	-	NCgl0297	-	ATPase involved in pili and flagella biosynthesis
297	 59.07	+1	317120..317896	+	258	23308787	-	NCgl0296	-	hypothetical protein
298	 54.51	0	317893..318468	+	191	19551553	-	NCgl0298	-	hypothetical protein
299	 53.23	0	318492..318692	+	66	19551554	-	NCgl0299	-	hypothetical protein
300	 58.88	+1	318696..319016	+	106	19551555	-	NCgl0300	-	hypothetical protein
301	 60.33	+1	319039..319338	+	99	19551556	-	NCgl0301	-	hypothetical protein
302	 57.76	0	319333..321690	-	785	19551557	-	NCgl0302	-	helicase
303	 57.84	0	322007..322210	+	67	19551558	-	NCgl0303	-	cold shock protein
304	 57.64	0	322910..325900	+	996	19551559	-	NCgl0304	-	DNA topoisomerase I
305	 54.48	0	325904..326617	+	237	19551560	-	NCgl0305	-	hypothetical protein
306	 58.18	+1	326692..328152	-	486	19551561	-	NCgl0306	-	adenylate cyclase
307	 57.94	0	328283..329542	+	419	23308788	-	NCgl0307	-	DNA polymerase III subunit delta'
308	 47.43	-1	329933..330379	+	148	19551563	-	NCgl0308	-	uncharacterized phage-associated protein
309	 51.24	0	330973..331536	+	187	19551565	-	NCgl0309	-	putative adenylate kinase
310	 55.71	0	331552..332436	+	294	19551566	-	NCgl0310	-	23S RNA-specific pseudouridylate synthase
311	 56.22	0	332919..334565	+	548	19551567	-	NCgl0311	-	beta-glucosidase-related glycosidase
312	 54.66	0	334549..334956	+	135	19551568	-	NCgl0312	-	hypothetical protein
313	 55.92	0	335009..336115	+	368	19551569	-	NCgl0313	-	class III Zn-dependent alcohol dehydrogenase
314	 53.14	0	336116..336751	+	211	19551570	-	NCgl0314	-	Zn-dependent hydrolase or glyoxylase
315	 54.02	0	336781..337452	+	223	23308789	-	NCgl0315	-	dehydrogenase
316	 52.55	0	337539..338771	+	410	19551572	-	NCgl0316	-	major facilitator superfamily permease
317	 55.98	0	338793..339728	+	311	19551573	-	NCgl0317	-	nucleoside-diphosphate-sugar epimerase
318	 55.82	0	340192..340569	-	125	19551574	-	NCgl0318	-	hypothetical protein
319	 55.56	0	340566..341276	-	236	19551575	-	NCgl0319	-	glycosyltransferase involved in cell wall biogenesis
320	 59.82	+1	341356..342378	+	340	19551576	-	NCgl0320	-	hypothetical protein
321	 53.56	0	342417..343454	+	345	19551577	-	NCgl0321	-	glycosyltransferase
322	 56.02	0	343636..345720	+	694	19551578	-	NCgl0322	-	5'-nucleotidase/2',3'-cyclic phosphodiesterase or related esterase
323	 42.94	-2	346107..346460	-	117	19551579	-	NCgl0323	-	hypothetical protein
324	 56.31	0	346958..348019	-	353	19551580	-	NCgl0324	-	Zn-dependent alcohol dehydrogenase
325	 54.55	0	348095..348952	-	285	19551581	-	NCgl0325	-	dTDP-glucose pyrophosphorylase
326	 59.10	+1	348949..350310	-	453	19551582	-	NCgl0326	-	dTDP-4-dehydrorhamnose 3,5-epimerase or related enzyme
327	 54.22	0	350310..351329	-	339	19551583	-	NCgl0327	-	dTDP-D-glucose 4,6-dehydratase
328	 54.64	0	351367..351948	-	193	19551584	-	NCgl0328	-	nitroreductase
329	 50.53	0	352693..353640	+	315	19551585	-	NCgl0329	-	periplasmic component of ABC-type Fe3+-siderophore transport system
330	 46.57	-2	353746..354387	-	213	19551586	-	NCgl0330	-	hypothetical protein
331	 56.67	0	354596..355846	-	416	19551587	-	NCgl0331	-	hypothetical protein
332	 59.80	+1	355846..357228	-	460	19551588	-	NCgl0332	-	aminopeptidase N
333	 58.30	+1	357234..359240	-	668	19551589	-	NCgl0333	-	serine protease
334	 60.39	+1	359759..360316	-	185	19551590	-	NCgl0334	-	hypothetical protein
335	 47.06	-1	360811..361881	-	356	19551591	-	NCgl0335	-	hypothetical protein
336	 55.56	0	362054..363151	-	365	19551592	-	NCgl0336	-	esterase
337	 51.01	0	363824..365260	+	478	19551593	-	NCgl0337	-	putative ATPase involved in chromosome partitioning
338	 48.51	-1	365250..365855	+	201	19551594	-	NCgl0338	-	protein-tyrosine-phosphatase
339	 50.05	-1	365927..366841	+	304	19551595	-	NCgl0339	-	hypothetical protein
340	 48.02	-1	366877..368646	+	589	19551596	-	NCgl0340	-	nucleoside-diphosphate sugar epimerase
341	 45.68	-2	368647..369804	+	385	19551597	-	NCgl0341	-	pyridoxal phosphate-dependent enzyme
342	 42.11	-2	369794..370408	+	204	19551598	-	NCgl0342	-	sugar transferase involved in lipopolysaccharide synthesis
343	 42.94	-2	370892..371776	+	294	19551599	-	NCgl0343	-	glycosyltransferase
344	 42.10	-2	371929..373422	+	497	19551600	-	NCgl0344	-	O-antigen and teichoic acid membrane export protein
345	 45.71	-2	373500..374816	+	438	19551601	-	NCgl0345	-	UDP-N-acetylglucosamine enolpyruvyl transferase
346	 43.45	-2	374833..375840	+	335	19551602	-	NCgl0346	-	UDP-N-acetylmuramate dehydrogenase
347	 41.14	-2	375842..376879	+	345	19551603	-	NCgl0347	-	cell wall biogenesis glycosyltransferase
348	 50.98	0	377683..377835	+	50	19551604	-	NCgl0348	-	putative transposase
349	 43.65	-2	378665..379837	-	390	23308790	-	NCgl0349	-	hypothetical protein
350	 44.48	-2	379847..380842	-	331	19551607	-	NCgl0350	-	acyltransferase
351	 41.75	-2	381948..383111	+	387	19551608	-	NCgl0351	-	UDP-glucose 6-dehydrogenase
352	 41.34	-2	383979..385190	-	403	23308791	-	NCgl0352	-	hypothetical protein
353	 43.27	-2	385371..386195	-	274	19551609	-	NCgl0353	-	cell wall biogenesis glycosyltransferase
354	 45.99	-2	386556..387203	+	215	19551610	-	NCgl0354	-	acetyltransferase
355	 49.93	-1	387692..389101	+	469	19551612	-	NCgl0355	-	dihydrolipoamide dehydrogenase
356	 48.58	-1	389293..390171	+	292	19551613	-	NCgl0356	-	UDP-glucose pyrophosphorylase
357	 49.56	-1	390161..390733	+	190	19551614	-	NCgl0357	-	hypothetical protein
358	 62.06	+2	390784..392193	-	469	19551615	-	NCgl0358	-	transcriptional regulator
359	 55.94	0	392705..393478	+	257	19551616	-	NCgl0359	-	hypothetical protein
360	 59.74	+1	393495..395516	+	673	19551617	sdhA	NCgl0360	-	succinate dehydrogenase flavoprotein subunit
361	 59.07	+1	395516..396265	+	249	19551618	-	NCgl0361	-	succinate dehydrogenase/fumarate reductase iron-sulfur subunit
362	 57.58	0	396324..396653	+	109	19551619	-	NCgl0362	-	hypothetical protein
363	 56.92	0	396741..396935	+	64	19551620	-	NCgl0363	-	hypothetical protein
364	 57.57	0	397229..398206	-	325	19551621	-	NCgl0364	-	hypothetical protein
365	 56.06	0	398329..399582	+	417	19551622	-	NCgl0365	-	hypothetical protein
54.31	MEAN

3.83	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.