IslandPathversion 1.0

IslandPath Analysis: Corynebacterium glutamicum ATCC 13032



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 54.31 STD DEV: 3.83
Corynebacterium glutamicum ATCC 13032, complete genome - 1..3309401
2993 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2894	 56.59	0	3197413..3198504	+	363	19554190	-	NCgl2894	-	myo-inositol-1-phosphate synthase
2895	 47.03	-1	3198580..3199134	-	184	19554191	-	NCgl2895	-	hypothetical protein
2896	 55.17	0	3199200..3200687	-	495	19554192	-	NCgl2896	-	hypothetical protein
2897	 54.02	0	3201258..3201755	-	165	19554193	-	NCgl2897	-	starvation-inducible DNA-binding protein
2898	 54.53	0	3201901..3202716	+	271	23309003	-	NCgl2898	-	formamidopyrimidine-DNA glycosylase
2899	 55.56	0	3202953..3204104	+	383	19554195	-	NCgl2899	-	hypothetical protein
2900	 54.14	0	3204166..3204732	+	188	19554196	-	NCgl2900	-	hypothetical protein
2901	 52.41	0	3204729..3205205	-	158	19554197	-	NCgl2901	-	methylated DNA-protein cysteine methyltransferase
2902	 50.89	0	3205220..3206233	-	337	19554198	-	NCgl2902	-	hypothetical protein
2903	 54.96	0	3206850..3208028	+	392	19554199	-	NCgl2903	-	sugar transporter family protein
2904	 59.03	+1	3208280..3209458	+	392	19554200	-	NCgl2904	-	malic enzyme
2905	 57.10	0	3209703..3211187	-	494	19554201	-	NCgl2905	-	sugar kinase
2906	 47.98	-1	3211244..3211837	-	197	23309004	-	NCgl2906	-	hypothetical protein
2907	 48.53	-1	3211902..3212513	-	203	19554203	-	NCgl2907	-	hypothetical protein
2908	 55.40	0	3212613..3213935	+	440	19554204	-	NCgl2908	-	putative mercuric reductase
2909	 57.10	0	3213932..3215164	-	410	19554205	-	NCgl2909	-	D-amino acid dehydrogenase subunit
2910	 50.93	0	3215255..3216760	-	501	19554206	-	NCgl2910	-	hypothetical protein
2911	 50.45	-1	3216884..3217216	-	110	23309005	-	NCgl2911	-	hypothetical protein
2912	 57.41	0	3217455..3217778	-	107	19554208	-	NCgl2912	-	hypothetical protein
2913	 55.88	0	3217994..3218605	+	203	19554209	-	NCgl2913	-	hypothetical protein
2914	 45.63	-2	3218778..3219704	+	308	19554210	-	NCgl2914	-	hypothetical protein
2915	 57.82	0	3219776..3222634	-	952	19554211	leuS	NCgl2915	-	leucyl-tRNA synthetase
2916	 52.78	0	3222723..3223154	+	143	23309006	-	NCgl2916	-	hypothetical protein
2917	 56.01	0	3223087..3223452	-	121	19554212	-	NCgl2917	-	virulence associated protein
2918	 59.09	+1	3223990..3224715	-	241	19554213	-	NCgl2918	-	mycothiol-dependent maleylpyruvate isomerase
2919	 54.40	0	3224716..3225555	-	279	19554214	-	NCgl2919	-	2-hydroxyhepta-2,4-diene-1,7-dioatesomerase
2920	 56.65	0	3225561..3226688	-	375	19554215	-	NCgl2920	-	gentisate 1,2-dioxygenase
2921	 54.18	0	3226908..3227684	-	258	19554216	-	NCgl2921	-	hypothetical protein
2922	 57.00	0	3227749..3229083	+	444	19554217	-	NCgl2922	-	putative benzoate transporter
2923	 59.97	+1	3229120..3230448	+	442	19554218	-	NCgl2923	-	putative hydroxylase/monooxygenase
2924	 56.26	0	3231052..3232290	-	412	19554219	-	NCgl2924	-	putative transmembrane symporter
2925	 54.00	0	3232597..3233109	+	170	19554220	-	NCgl2925	-	hypothetical protein
2926	 51.15	0	3233248..3233421	-	57	23309007	-	NCgl2926	-	hypothetical protein
2927	 57.55	0	3233404..3234960	+	518	19554221	-	NCgl2927	-	anthranilate synthase component I
2928	 54.70	0	3234957..3235583	+	208	19554222	-	NCgl2928	-	anthranilate synthase component II
2929	 59.03	+1	3235603..3236649	+	348	19554223	trpD	NCgl2929	-	anthranilate phosphoribosyltransferase
2930	 58.11	0	3236642..3238066	+	474	23309008	-	NCgl2930	-	bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase
2931	 62.28	+2	3238083..3239336	+	417	19554225	-	NCgl2931	-	tryptophan synthase subunit beta
2932	 59.43	+1	3239333..3240175	+	280	19554226	trpA	NCgl2932	-	tryptophan synthase subunit alpha
2933	 57.00	0	3240311..3241852	-	513	19554227	ulaA	NCgl2933	-	ascorbate-specific PTS system enzyme IIC
2934	 55.23	0	3241877..3242689	-	270	19554228	-	NCgl2934	-	hypothetical protein
2935	 54.90	0	3242855..3243763	+	302	19554229	-	NCgl2935	-	ABC-type transporter, ATPase component
2936	 56.52	0	3243760..3245346	+	528	23309009	-	NCgl2936	-	ABC-type transporter, permease component
2937	 53.42	0	3245318..3245770	+	150	23309010	-	NCgl2937	-	hypothetical protein
2938	 54.00	0	3245820..3246932	-	370	23309011	-	NCgl2938	-	NADH:flavin oxidoreductase
2939	 53.41	0	3247229..3248209	+	326	19554233	-	NCgl2939	-	hypothetical protein
2940	 54.18	0	3248393..3249169	+	258	19554234	-	NCgl2940	-	hypothetical protein
2941	 52.51	0	3249185..3249523	-	112	19554235	-	NCgl2941	-	transcriptional regulator
2942	 55.97	0	3249625..3250746	+	373	19554236	-	NCgl2942	-	NADH:flavin oxidoreductase
2943	 55.15	0	3250759..3251409	+	216	19554237	-	NCgl2943	-	hypothetical protein
2944	 53.85	0	3251464..3251619	-	51	19554238	-	NCgl2944	-	hypothetical protein
2945	 51.57	0	3251741..3251899	-	52	19554239	-	NCgl2945	-	hypothetical protein
2946	 55.56	0	3252131..3252301	-	56	19554240	-	NCgl2946	-	hypothetical protein
2947	 55.56	0	3252729..3253484	+	251	19554242	-	NCgl2947	-	short chain dehydrogenase
2948	 44.81	-2	3253561..3253743	+	60	19554243	-	NCgl2948	-	hypothetical protein
2949	 55.93	0	3253822..3255348	-	508	19554244	-	NCgl2949	-	dipeptide/tripeptide permease
2950	 50.54	0	3255742..3256299	-	185	19554245	-	NCgl2950	-	transcriptional regulator
2951	 57.17	0	3256469..3257374	-	301	19554246	-	NCgl2951	-	putative hydroxyquinol/catechol 1,2-dioxygenase
2952	 57.05	0	3257401..3258492	-	363	19554247	-	NCgl2952	-	maleylacetate reductase
2953	 58.02	0	3258559..3260085	-	508	19554248	-	NCgl2953	-	putative sugar permease
2954	 55.67	0	3261130..3261993	+	287	23309012	-	NCgl2954	-	transcriptional regulator
2955	 56.67	0	3262146..3263225	+	359	19554250	-	NCgl2955	-	putative oxidoreductase
2956	 55.90	0	3263238..3264119	+	293	19554251	-	NCgl2956	-	hypothetical protein
2957	 56.05	0	3264143..3265150	+	335	19554252	-	NCgl2957	-	myo-inositol dehydrogenase
2958	 59.02	+1	3265185..3266270	+	361	19554253	-	NCgl2958	-	putative dehydrogenase
2959	 54.32	0	3266604..3271097	+	1497	19554254	-	NCgl2959	-	hypothetical protein
2960	 51.92	0	3271465..3272481	+	338	19554255	-	NCgl2960	-	hypothetical protein
2961	 53.86	0	3272561..3274075	-	504	19554256	-	NCgl2961	-	putative proline-betaine transporter
2962	 54.33	0	3274486..3275190	-	234	19554257	-	NCgl2962	-	hypothetical protein
2963	 45.47	-2	3275600..3276571	-	323	19554258	-	NCgl2963	-	hypothetical protein
2964	 46.94	-1	3276669..3281600	-	1643	19554259	-	NCgl2964	-	putative helicase
2965	 55.29	0	3281664..3282173	-	169	19554260	-	NCgl2965	-	hypothetical protein
2966	 54.06	0	3282345..3282947	-	200	19554261	-	NCgl2966	-	hydroxymethylpyrimidine/phosphomethylpyrimidine kinase
2967	 46.28	-2	3282743..3283105	+	120	23309013	-	NCgl2967	-	hypothetical protein
2968	 52.17	0	3283181..3283387	+	68	19554262	-	NCgl2968	-	putative metal associated protein
2969	 55.60	0	3283471..3284238	-	255	19554263	-	NCgl2969	-	putative membrane transport protein
2970	 58.21	+1	3284397..3285425	-	342	19554264	-	NCgl2970	-	ABC-type transport systems, periplasmic component
2971	 59.82	+1	3285603..3286580	+	325	19554265	-	NCgl2971	-	putative oxidoreductase/dehydrogenase
2972	 54.78	0	3286623..3287009	+	128	19554266	-	NCgl2972	-	hypothetical protein
2973	 55.93	0	3287391..3288191	-	266	19554268	-	NCgl2973	-	phosphomethylpyrimidine kinase
2974	 51.44	0	3288266..3288613	+	115	19554269	-	NCgl2974	-	hypothetical protein
2975	 56.37	0	3288686..3288889	+	67	19554270	-	NCgl2975	-	putative copper chaperone
2976	 57.76	0	3288969..3289316	-	115	19554271	-	NCgl2976	-	hypothetical protein
2977	 54.48	0	3289309..3290022	-	237	19554272	-	NCgl2977	-	branched-chain amino acid permease
2978	 55.78	0	3290023..3290628	-	201	19554273	-	NCgl2978	-	hypothetical protein
2979	 53.00	0	3290621..3292105	-	494	19554274	-	NCgl2979	-	putative polynucleotide polymerase
2980	 53.97	0	3292533..3293501	+	322	23309014	-	NCgl2980	-	hypothetical protein
2981	 56.09	0	3293498..3296011	+	837	19554277	-	NCgl2981	-	hypothetical protein
2982	 60.03	+1	3296064..3299408	+	1114	19554278	-	NCgl2982	-	putative virulence factor
2983	 51.98	0	3299662..3300267	+	201	23309015	-	NCgl2983	-	putative RNA polymerase sigma factor
2984	 57.23	0	3300372..3301325	+	317	19554280	-	NCgl2984	-	thioredoxin reductase
2985	 50.93	0	3301410..3301733	+	107	19554281	-	NCgl2985	-	thioredoxin
2986	 56.47	0	3301756..3303000	+	414	23309016	-	NCgl2986	-	N-acetylmuramoyl-L-alanine amidase
2987	 58.13	0	3302997..3303617	-	206	19554283	-	NCgl2987	-	hypothetical protein
2988	 59.39	+1	3303634..3304773	-	379	19554284	-	NCgl2988	-	putative cell division protein ParB
2989	 52.49	0	3304833..3305756	-	307	19554285	-	NCgl2989	-	putative cell division protein ParA
2990	 53.42	0	3305862..3306533	-	223	23309017	gidB	NCgl2990	-	glucose-inhibited division protein B
2991	 54.19	0	3306680..3307633	-	317	19554287	-	NCgl2991	-	putative inner membrane protein translocase component YidC
2992	 57.21	0	3307969..3308370	-	133	19554288	rnpA	NCgl2992	-	ribonuclease P
2993	 59.72	+1	3308410..3308553	-	47	19554289	rpmH	NCgl2993	-	50S ribosomal protein L34
54.31	MEAN

3.83	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.