IslandPathversion 1.0

IslandPath Analysis: Corynebacterium glutamicum ATCC 13032



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 54.31 STD DEV: 3.83
Corynebacterium glutamicum ATCC 13032, complete genome - 1..3309401
2993 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2852	 61.57	+1	3157477..3157731	-	84	19554138	-	NCgl2852	-	hypothetical protein
2853	 64.15	+2	3158125..3158838	+	237	23308998	-	NCgl2853	-	putative methyltransferase
2854	 63.21	+2	3159079..3159801	-	240	19554141	-	NCgl2854	-	uncharacterized membrane protein
2855	 60.73	+1	3160721..3160939	-	72	23308999	-	NCgl2855	-	site-specific recombinase/resolvase
2856	 62.35	+2	3161085..3161408	-	107	19554145	-	NCgl2856	-	ferredoxin 3
2857	 57.14	0	3161680..3162015	-	111	19554146	-	NCgl2857	-	hypothetical protein
2858	 61.09	+1	3163072..3163734	-	220	19554149	-	NCgl2858	-	hypothetical protein
2859	 67.25	+2	3163787..3166006	-	739	19554150	-	NCgl2859	-	cation transport ATPase
2860	 65.82	+2	3166057..3166293	-	78	19554151	-	NCgl2860	-	hypothetical protein
2861	 69.54	+2	3166265..3166438	-	57	19554152	-	NCgl2861	-	hypothetical protein
2862	 64.83	+2	3166448..3167647	-	399	19554153	-	NCgl2862	-	two-component system, sensory transduction histidine kinase
2863	 67.22	+2	3167644..3168366	-	240	19554154	-	NCgl2863	-	two-component system, response regulator
2864	 62.33	+2	3168769..3169344	+	191	19554155	-	NCgl2864	-	hypothetical protein
2865	 64.57	+2	3169415..3170896	+	493	19554156	-	NCgl2865	-	putative multicopper oxidase
2866	 62.84	+2	3171255..3171620	+	121	19554157	-	NCgl2866	-	hypothetical protein
2867	 66.99	+2	3171617..3172537	-	306	19554158	-	NCgl2867	-	putative NADPH:quinone reductase
2868	 66.46	+2	3172996..3173469	+	157	23309000	-	NCgl2868	-	hypothetical protein
2869	 59.92	+1	3173625..3173861	+	78	19554161	-	NCgl2869	-	copper chaperone
2870	 61.01	+1	3174067..3174384	+	105	19554162	-	NCgl2870	-	hypothetical protein
2871	 65.76	+2	3175028..3176905	+	625	19554164	-	NCgl2871	-	cation transport ATPase
2872	 55.71	0	3177087..3177305	-	72	19554165	-	NCgl2872	-	hypothetical protein
2873	 59.77	+1	3177306..3177566	-	86	19554166	-	NCgl2873	-	hypothetical protein
2874	 57.07	0	3178110..3178484	-	124	19554167	-	NCgl2874	-	thioredoxin
2875	 53.14	0	3178670..3178876	+	68	19554168	-	NCgl2875	-	copper chaperone
2876	 55.75	0	3179050..3180396	+	448	23309001	-	NCgl2876	-	putative transmembrane transport protein
2877	 51.99	0	3180549..3181127	-	192	23309002	-	NCgl2877	-	hypothetical protein
2878	 56.29	0	3181335..3182867	-	510	19554173	-	NCgl2878	-	replicative DNA helicase
2879	 58.06	0	3183476..3183928	-	150	19554174	rplI	NCgl2879	-	50S ribosomal protein L9
2880	 57.52	0	3183985..3184662	-	225	19554175	-	NCgl2880	-	single-strand DNA-binding protein
2881	 52.78	0	3184699..3184986	-	95	19554176	rpsF	NCgl2881	-	30S ribosomal protein S6
2882	 51.04	0	3185346..3185537	-	63	19554178	-	NCgl2882	-	hypothetical protein
2883	 54.00	0	3185534..3186994	-	486	19554179	-	NCgl2883	-	hypothetical protein
2884	 52.70	0	3187040..3189202	-	720	19554180	-	NCgl2884	-	penicillin-binding protein
2885	 50.89	0	3189294..3189686	-	130	19554181	-	NCgl2885	-	hypothetical protein
2886	 53.59	0	3189878..3190351	+	157	19554182	-	NCgl2886	-	transcriptional regulator
2887	 51.32	0	3190379..3191323	+	314	19554183	-	NCgl2887	-	hypothetical protein
2888	 51.61	0	3191355..3191852	+	165	19554184	-	NCgl2888	-	hypothetical protein
2889	 56.48	0	3191920..3192243	-	107	19554185	-	NCgl2889	-	hypothetical protein
2890	 52.18	0	3192264..3193202	-	312	19554186	-	NCgl2890	-	hypothetical protein
2891	 52.21	0	3193250..3194515	-	421	19554187	-	NCgl2891	-	ABC-type transporter, permease component
2892	 50.79	0	3194512..3195204	-	230	19554188	-	NCgl2892	-	ABC-type transporter, ATPase component
2893	 55.19	0	3195208..3197046	-	612	19554189	-	NCgl2893	-	efflux system protein
2894	 56.59	0	3197413..3198504	+	363	19554190	-	NCgl2894	-	myo-inositol-1-phosphate synthase
2895	 47.03	-1	3198580..3199134	-	184	19554191	-	NCgl2895	-	hypothetical protein
2896	 55.17	0	3199200..3200687	-	495	19554192	-	NCgl2896	-	hypothetical protein
2897	 54.02	0	3201258..3201755	-	165	19554193	-	NCgl2897	-	starvation-inducible DNA-binding protein
2898	 54.53	0	3201901..3202716	+	271	23309003	-	NCgl2898	-	formamidopyrimidine-DNA glycosylase
2899	 55.56	0	3202953..3204104	+	383	19554195	-	NCgl2899	-	hypothetical protein
2900	 54.14	0	3204166..3204732	+	188	19554196	-	NCgl2900	-	hypothetical protein
2901	 52.41	0	3204729..3205205	-	158	19554197	-	NCgl2901	-	methylated DNA-protein cysteine methyltransferase
2902	 50.89	0	3205220..3206233	-	337	19554198	-	NCgl2902	-	hypothetical protein
2903	 54.96	0	3206850..3208028	+	392	19554199	-	NCgl2903	-	sugar transporter family protein
2904	 59.03	+1	3208280..3209458	+	392	19554200	-	NCgl2904	-	malic enzyme
2905	 57.10	0	3209703..3211187	-	494	19554201	-	NCgl2905	-	sugar kinase
2906	 47.98	-1	3211244..3211837	-	197	23309004	-	NCgl2906	-	hypothetical protein
2907	 48.53	-1	3211902..3212513	-	203	19554203	-	NCgl2907	-	hypothetical protein
2908	 55.40	0	3212613..3213935	+	440	19554204	-	NCgl2908	-	putative mercuric reductase
2909	 57.10	0	3213932..3215164	-	410	19554205	-	NCgl2909	-	D-amino acid dehydrogenase subunit
2910	 50.93	0	3215255..3216760	-	501	19554206	-	NCgl2910	-	hypothetical protein
2911	 50.45	-1	3216884..3217216	-	110	23309005	-	NCgl2911	-	hypothetical protein
2912	 57.41	0	3217455..3217778	-	107	19554208	-	NCgl2912	-	hypothetical protein
2913	 55.88	0	3217994..3218605	+	203	19554209	-	NCgl2913	-	hypothetical protein
2914	 45.63	-2	3218778..3219704	+	308	19554210	-	NCgl2914	-	hypothetical protein
2915	 57.82	0	3219776..3222634	-	952	19554211	leuS	NCgl2915	-	leucyl-tRNA synthetase
2916	 52.78	0	3222723..3223154	+	143	23309006	-	NCgl2916	-	hypothetical protein
2917	 56.01	0	3223087..3223452	-	121	19554212	-	NCgl2917	-	virulence associated protein
2918	 59.09	+1	3223990..3224715	-	241	19554213	-	NCgl2918	-	mycothiol-dependent maleylpyruvate isomerase
2919	 54.40	0	3224716..3225555	-	279	19554214	-	NCgl2919	-	2-hydroxyhepta-2,4-diene-1,7-dioatesomerase
2920	 56.65	0	3225561..3226688	-	375	19554215	-	NCgl2920	-	gentisate 1,2-dioxygenase
2921	 54.18	0	3226908..3227684	-	258	19554216	-	NCgl2921	-	hypothetical protein
2922	 57.00	0	3227749..3229083	+	444	19554217	-	NCgl2922	-	putative benzoate transporter
2923	 59.97	+1	3229120..3230448	+	442	19554218	-	NCgl2923	-	putative hydroxylase/monooxygenase
2924	 56.26	0	3231052..3232290	-	412	19554219	-	NCgl2924	-	putative transmembrane symporter
2925	 54.00	0	3232597..3233109	+	170	19554220	-	NCgl2925	-	hypothetical protein
2926	 51.15	0	3233248..3233421	-	57	23309007	-	NCgl2926	-	hypothetical protein
2927	 57.55	0	3233404..3234960	+	518	19554221	-	NCgl2927	-	anthranilate synthase component I
2928	 54.70	0	3234957..3235583	+	208	19554222	-	NCgl2928	-	anthranilate synthase component II
2929	 59.03	+1	3235603..3236649	+	348	19554223	trpD	NCgl2929	-	anthranilate phosphoribosyltransferase
2930	 58.11	0	3236642..3238066	+	474	23309008	-	NCgl2930	-	bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase
2931	 62.28	+2	3238083..3239336	+	417	19554225	-	NCgl2931	-	tryptophan synthase subunit beta
2932	 59.43	+1	3239333..3240175	+	280	19554226	trpA	NCgl2932	-	tryptophan synthase subunit alpha
2933	 57.00	0	3240311..3241852	-	513	19554227	ulaA	NCgl2933	-	ascorbate-specific PTS system enzyme IIC
2934	 55.23	0	3241877..3242689	-	270	19554228	-	NCgl2934	-	hypothetical protein
2935	 54.90	0	3242855..3243763	+	302	19554229	-	NCgl2935	-	ABC-type transporter, ATPase component
2936	 56.52	0	3243760..3245346	+	528	23309009	-	NCgl2936	-	ABC-type transporter, permease component
2937	 53.42	0	3245318..3245770	+	150	23309010	-	NCgl2937	-	hypothetical protein
2938	 54.00	0	3245820..3246932	-	370	23309011	-	NCgl2938	-	NADH:flavin oxidoreductase
2939	 53.41	0	3247229..3248209	+	326	19554233	-	NCgl2939	-	hypothetical protein
2940	 54.18	0	3248393..3249169	+	258	19554234	-	NCgl2940	-	hypothetical protein
2941	 52.51	0	3249185..3249523	-	112	19554235	-	NCgl2941	-	transcriptional regulator
2942	 55.97	0	3249625..3250746	+	373	19554236	-	NCgl2942	-	NADH:flavin oxidoreductase
2943	 55.15	0	3250759..3251409	+	216	19554237	-	NCgl2943	-	hypothetical protein
2944	 53.85	0	3251464..3251619	-	51	19554238	-	NCgl2944	-	hypothetical protein
2945	 51.57	0	3251741..3251899	-	52	19554239	-	NCgl2945	-	hypothetical protein
2946	 55.56	0	3252131..3252301	-	56	19554240	-	NCgl2946	-	hypothetical protein
2947	 55.56	0	3252729..3253484	+	251	19554242	-	NCgl2947	-	short chain dehydrogenase
2948	 44.81	-2	3253561..3253743	+	60	19554243	-	NCgl2948	-	hypothetical protein
2949	 55.93	0	3253822..3255348	-	508	19554244	-	NCgl2949	-	dipeptide/tripeptide permease
2950	 50.54	0	3255742..3256299	-	185	19554245	-	NCgl2950	-	transcriptional regulator
2951	 57.17	0	3256469..3257374	-	301	19554246	-	NCgl2951	-	putative hydroxyquinol/catechol 1,2-dioxygenase
54.31	MEAN

3.83	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.