IslandPath Analysis: Corynebacterium glutamicum ATCC 13032



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 54.31   STD DEV: 3.83
Corynebacterium glutamicum ATCC 13032, complete genome - 1..3309401
2993 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2801	 52.73	0	3100771..3101430	+	219	19554088	-	NCgl2801	-	hypothetical protein
2802	 59.73	+1	3101735..3102772	+	345	23308989	-	NCgl2802	-	transcriptional regulator
2803	 55.59	0	3102910..3103767	+	285	19554091	-	NCgl2803	-	hypothetical protein
2804	 56.36	0	3103927..3104256	+	109	19554092	-	NCgl2804	-	hypothetical protein
2805	 57.58	0	3104437..3105723	+	428	19554093	-	NCgl2805	-	hypothetical protein
2806	 58.99	+1	3106051..3106923	-	290	19554094	-	NCgl2806	-	hypothetical protein
2807	 51.09	0	3106949..3107770	-	273	23308990	-	NCgl2807	-	glycerophosphoryl diester phosphodiesterase
2808	 53.09	0	3108132..3109523	+	463	19554096	-	NCgl2808	-	putative gluconate permease
2809	 58.28	+1	3110462..3112321	-	619	19554097	-	NCgl2809	-	pyruvate kinase
2810	 55.77	0	3112447..3113391	-	314	19554098	ldh	NCgl2810	-	L-lactate dehydrogenase
2811	 57.17	0	3113620..3115398	+	592	19554099	-	NCgl2811	-	hypothetical protein
2812	 59.62	+1	3115408..3116046	+	212	19554100	-	NCgl2812	-	HAD superfamily hydrolase
2813	 54.21	0	3116080..3116625	+	181	19554101	-	NCgl2813	-	flavoprotein
2814	 60.78	+1	3116641..3117336	+	231	19554102	-	NCgl2814	-	transcriptional regulator
2815	 56.27	0	3117337..3118125	+	262	19554103	-	NCgl2815	-	hypothetical protein
2816	 56.99	0	3118285..3119586	+	433	19554104	-	NCgl2816	-	putative integral membrane transport protein
2817	 59.38	+1	3119621..3120883	+	420	19554105	-	NCgl2817	-	L-lactate dehydrogenase
2818	 43.04	-2	3121081..3121317	+	78	19554106	-	NCgl2818	-	hypothetical protein
2819	 44.27	-2	3121530..3121913	+	127	19554107	-	NCgl2819	-	hypothetical protein
2820	 47.52	-1	3121990..3122130	-	46	23308991	-	NCgl2820	-	hypothetical protein
2821	 56.48	0	3122554..3124173	-	539	19554108	-	NCgl2821	-	hypothetical protein
2822	 49.36	-1	3124339..3124887	-	182	19554109	-	NCgl2822	-	hypothetical protein
2823	 56.05	0	3124895..3125299	-	134	19554110	-	NCgl2823	-	putative metal-dependent hydrolase/carboxypeptidase
2824	 50.33	-1	3125344..3125496	+	50	23308992	-	NCgl2824	-	hypothetical protein
2825	 55.35	0	3125493..3126146	-	217	19554111	-	NCgl2825	-	methionine sulfoxide reductase A
2826	 56.88	0	3126393..3126995	+	200	19554112	-	NCgl2826	-	superoxide dismutase
2827	 56.74	0	3127492..3128418	-	308	19554113	-	NCgl2827	-	hypothetical protein
2828	 52.68	0	3128493..3129743	+	416	19554114	-	NCgl2828	-	putative transport protein
2829	 56.74	0	3129858..3131399	+	513	19554115	-	NCgl2829	-	hypothetical protein
2830	 58.62	+1	3131506..3132921	-	471	19554116	-	NCgl2830	-	hypothetical protein
2831	 52.83	0	3133116..3133751	+	211	19554117	-	NCgl2831	-	hypothetical protein
2832	 54.33	0	3133776..3135242	-	488	19554118	-	NCgl2832	-	putative membrane transport protein
2833	 55.34	0	3135298..3135756	+	152	19554119	-	NCgl2833	-	transcriptional regulator
2834	 60.72	+1	3135854..3136492	-	212	19554120	-	NCgl2834	-	two-component system, response regulator
2835	 53.41	0	3136591..3137925	-	444	19554121	-	NCgl2835	-	two-component system, sensory transduction histidine kinase
2836	 59.24	+1	3137924..3138475	+	183	19554122	-	NCgl2836	-	hypothetical protein
2837	 45.10	-2	3138479..3138631	-	50	19554123	-	NCgl2837	-	hypothetical protein
2838	 52.73	0	3138632..3139456	-	274	23308993	-	NCgl2838	-	hypothetical protein
2839	 52.48	0	3139688..3140956	+	422	19554125	-	NCgl2839	-	putative inner membrane protein translocase component YidC
2840	 53.74	0	3140883..3141524	-	213	19554126	-	NCgl2840	-	transcriptional regulator
2841	 47.73	-1	3141707..3141970	-	87	19554127	-	NCgl2841	-	hypothetical protein
2842	 56.07	0	3142452..3143357	-	301	19554128	-	NCgl2842	-	hypothetical protein
2843	 56.87	0	3143494..3144483	-	329	23308994	-	NCgl2843	-	alkanal monooxygenase-like protein
2844	 58.72	+1	3144662..3145630	+	322	19554131	-	NCgl2844	-	23S RNA-specific pseudouridylate synthase
2845	 45.24	-2	3151367..3151576	-	69	23308995	-	NCgl2845	-	hypothetical protein
2846	 55.46	0	3151840..3152205	-	121	19554132	-	NCgl2846	-	transcriptional regulator
2847	 54.05	0	3152414..3153832	+	472	23308996	-	NCgl2847	-	hypothetical protein
2848	 52.63	0	3153892..3154767	-	291	19554134	-	NCgl2848	-	hypothetical protein
2849	 50.64	0	3154818..3154973	+	51	23308997	-	NCgl2849	-	hypothetical protein
2850	 50.99	0	3155244..3156251	-	335	19554135	-	NCgl2850	-	transposase
2851	 58.10	0	3156304..3157248	-	314	19554136	-	NCgl2851	-	hypothetical protein
2852	 61.57	+1	3157477..3157731	-	84	19554138	-	NCgl2852	-	hypothetical protein
2853	 64.15	+2	3158125..3158838	+	237	23308998	-	NCgl2853	-	putative methyltransferase
2854	 63.21	+2	3159079..3159801	-	240	19554141	-	NCgl2854	-	uncharacterized membrane protein
2855	 60.73	+1	3160721..3160939	-	72	23308999	-	NCgl2855	-	site-specific recombinase/resolvase
2856	 62.35	+2	3161085..3161408	-	107	19554145	-	NCgl2856	-	ferredoxin 3
2857	 57.14	0	3161680..3162015	-	111	19554146	-	NCgl2857	-	hypothetical protein
2858	 61.09	+1	3163072..3163734	-	220	19554149	-	NCgl2858	-	hypothetical protein
2859	 67.25	+2	3163787..3166006	-	739	19554150	-	NCgl2859	-	cation transport ATPase
2860	 65.82	+2	3166057..3166293	-	78	19554151	-	NCgl2860	-	hypothetical protein
2861	 69.54	+2	3166265..3166438	-	57	19554152	-	NCgl2861	-	hypothetical protein
2862	 64.83	+2	3166448..3167647	-	399	19554153	-	NCgl2862	-	two-component system, sensory transduction histidine kinase
2863	 67.22	+2	3167644..3168366	-	240	19554154	-	NCgl2863	-	two-component system, response regulator
2864	 62.33	+2	3168769..3169344	+	191	19554155	-	NCgl2864	-	hypothetical protein
2865	 64.57	+2	3169415..3170896	+	493	19554156	-	NCgl2865	-	putative multicopper oxidase
2866	 62.84	+2	3171255..3171620	+	121	19554157	-	NCgl2866	-	hypothetical protein
2867	 66.99	+2	3171617..3172537	-	306	19554158	-	NCgl2867	-	putative NADPH:quinone reductase
2868	 66.46	+2	3172996..3173469	+	157	23309000	-	NCgl2868	-	hypothetical protein
2869	 59.92	+1	3173625..3173861	+	78	19554161	-	NCgl2869	-	copper chaperone
2870	 61.01	+1	3174067..3174384	+	105	19554162	-	NCgl2870	-	hypothetical protein
2871	 65.76	+2	3175028..3176905	+	625	19554164	-	NCgl2871	-	cation transport ATPase
2872	 55.71	0	3177087..3177305	-	72	19554165	-	NCgl2872	-	hypothetical protein
2873	 59.77	+1	3177306..3177566	-	86	19554166	-	NCgl2873	-	hypothetical protein
2874	 57.07	0	3178110..3178484	-	124	19554167	-	NCgl2874	-	thioredoxin
2875	 53.14	0	3178670..3178876	+	68	19554168	-	NCgl2875	-	copper chaperone
2876	 55.75	0	3179050..3180396	+	448	23309001	-	NCgl2876	-	putative transmembrane transport protein
2877	 51.99	0	3180549..3181127	-	192	23309002	-	NCgl2877	-	hypothetical protein
2878	 56.29	0	3181335..3182867	-	510	19554173	-	NCgl2878	-	replicative DNA helicase
2879	 58.06	0	3183476..3183928	-	150	19554174	rplI	NCgl2879	-	50S ribosomal protein L9
2880	 57.52	0	3183985..3184662	-	225	19554175	-	NCgl2880	-	single-strand DNA-binding protein
2881	 52.78	0	3184699..3184986	-	95	19554176	rpsF	NCgl2881	-	30S ribosomal protein S6
2882	 51.04	0	3185346..3185537	-	63	19554178	-	NCgl2882	-	hypothetical protein
2883	 54.00	0	3185534..3186994	-	486	19554179	-	NCgl2883	-	hypothetical protein
2884	 52.70	0	3187040..3189202	-	720	19554180	-	NCgl2884	-	penicillin-binding protein
2885	 50.89	0	3189294..3189686	-	130	19554181	-	NCgl2885	-	hypothetical protein
2886	 53.59	0	3189878..3190351	+	157	19554182	-	NCgl2886	-	transcriptional regulator
2887	 51.32	0	3190379..3191323	+	314	19554183	-	NCgl2887	-	hypothetical protein
2888	 51.61	0	3191355..3191852	+	165	19554184	-	NCgl2888	-	hypothetical protein
2889	 56.48	0	3191920..3192243	-	107	19554185	-	NCgl2889	-	hypothetical protein
2890	 52.18	0	3192264..3193202	-	312	19554186	-	NCgl2890	-	hypothetical protein
2891	 52.21	0	3193250..3194515	-	421	19554187	-	NCgl2891	-	ABC-type transporter, permease component
2892	 50.79	0	3194512..3195204	-	230	19554188	-	NCgl2892	-	ABC-type transporter, ATPase component
2893	 55.19	0	3195208..3197046	-	612	19554189	-	NCgl2893	-	efflux system protein
2894	 56.59	0	3197413..3198504	+	363	19554190	-	NCgl2894	-	myo-inositol-1-phosphate synthase
2895	 47.03	-1	3198580..3199134	-	184	19554191	-	NCgl2895	-	hypothetical protein
2896	 55.17	0	3199200..3200687	-	495	19554192	-	NCgl2896	-	hypothetical protein
2897	 54.02	0	3201258..3201755	-	165	19554193	-	NCgl2897	-	starvation-inducible DNA-binding protein
2898	 54.53	0	3201901..3202716	+	271	23309003	-	NCgl2898	-	formamidopyrimidine-DNA glycosylase
2899	 55.56	0	3202953..3204104	+	383	19554195	-	NCgl2899	-	hypothetical protein
2900	 54.14	0	3204166..3204732	+	188	19554196	-	NCgl2900	-	hypothetical protein
54.31	MEAN

3.83	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.