IslandPathversion 1.0

IslandPath Analysis: Corynebacterium glutamicum ATCC 13032



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 54.31 STD DEV: 3.83
Corynebacterium glutamicum ATCC 13032, complete genome - 1..3309401
2993 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2754	 54.97	0	3040746..3041933	-	395	23308984	-	NCgl2754	-	beta-N-acetylglucosaminidase-like protein
2755	 58.84	+1	3041995..3042441	+	148	19554043	-	NCgl2755	-	hypothetical protein
2756	 58.82	+1	3042504..3042707	+	67	19554044	-	NCgl2756	-	hypothetical protein
2757	 57.94	0	3042757..3045792	+	1011	19554045	-	NCgl2757	-	hypothetical protein
2758	 48.99	-1	3045797..3045994	+	65	23308985	-	NCgl2758	-	hypothetical protein
2759	 57.80	0	3046120..3047190	-	356	19554047	-	NCgl2759	-	acyltransferase
2760	 50.06	-1	3047234..3048052	+	272	19554048	-	NCgl2760	-	hypothetical protein
2761	 59.23	+1	3048059..3049483	+	474	19554049	-	NCgl2761	-	hypothetical protein
2762	 59.87	+1	3049454..3050557	-	367	19554050	-	NCgl2762	-	glycosyltransferase
2763	 57.50	0	3050595..3051194	+	199	19554051	-	NCgl2763	-	hypothetical protein
2764	 56.72	0	3051195..3051968	+	257	19554052	-	NCgl2764	-	SAM-dependent methyltransferase
2765	 57.67	0	3052060..3053892	-	610	19554053	-	NCgl2765	-	phosphoenolpyruvate carboxykinase
2766	 50.10	-1	3054754..3055773	+	339	19554054	-	NCgl2766	-	hypothetical protein
2767	 54.04	0	3055868..3056635	+	255	19554055	trmB	NCgl2767	-	tRNA (guanine-N(7))-methyltransferase
2768	 57.06	0	3056635..3057321	+	228	19554056	-	NCgl2768	-	hypothetical protein
2769	 55.20	0	3057329..3059647	+	772	19554057	-	NCgl2769	-	putative integral membrane protein
2770	 55.71	0	3059652..3060737	+	361	19554058	-	NCgl2770	-	hypothetical protein
2771	 57.38	0	3060734..3061099	+	121	19554059	-	NCgl2771	-	hypothetical protein
2772	 57.06	0	3061378..3062928	-	516	19554060	-	NCgl2772	-	acetyl-CoA carboxylase beta subunit
2773	 57.19	0	3062949..3067781	-	1610	19554061	-	NCgl2773	-	putative polyketide synthase
2774	 57.22	0	3068141..3070003	-	620	19554062	-	NCgl2774	-	acyl-CoA synthase
2775	 56.99	0	3070212..3071141	-	309	19554063	-	NCgl2775	-	hypothetical protein
2776	 57.68	0	3071145..3071645	-	166	19554064	-	NCgl2776	-	hypothetical protein
2777	 57.45	0	3071648..3073621	-	657	19554065	-	NCgl2777	-	putative esterase
2778	 57.13	0	3074078..3075451	+	457	19554066	-	NCgl2778	-	hypothetical protein
2779	 56.24	0	3075538..3076563	-	341	19554067	-	NCgl2779	-	putative esterase
2780	 53.47	0	3076713..3078773	-	686	19554068	-	NCgl2780	-	hypothetical protein
2781	 57.16	0	3078851..3079849	-	332	19554069	-	NCgl2781	-	phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase
2782	 57.40	0	3079846..3080352	-	168	19554070	-	NCgl2782	-	membrane-associated phospholipid phosphatase
2783	 57.53	0	3080342..3082333	-	663	19554071	-	NCgl2783	-	hypothetical protein
2784	 52.68	0	3082564..3083964	+	466	19554072	-	NCgl2784	-	hypothetical protein
2785	 56.04	0	3083933..3084412	-	159	19554073	-	NCgl2785	-	membrane-associated phospholipid phosphatase
2786	 49.63	-1	3084422..3085096	-	224	19554074	-	NCgl2786	-	hypothetical protein
2787	 54.05	0	3085262..3087052	+	596	19554075	-	NCgl2787	-	K+ transport flavoprotein
2788	 55.22	0	3087099..3088304	-	401	19554076	-	NCgl2788	-	UDP-galactopyranose mutase
2789	 55.65	0	3088590..3090668	+	692	19554077	-	NCgl2789	-	hypothetical protein
2790	 57.39	0	3090758..3092287	-	509	19554078	glpK	NCgl2790	-	glycerol kinase
2791	 58.78	+1	3092340..3093176	-	278	19554079	-	NCgl2791	-	hypothetical protein
2792	 56.20	0	3093173..3094051	-	292	19554080	-	NCgl2792	-	1-acyl-sn-glycerol-3-phosphate acyltransferase
2793	 56.26	0	3094076..3095344	-	422	23308986	-	NCgl2793	-	seryl-tRNA synthetase
2794	 57.68	0	3095491..3096291	+	266	19554082	-	NCgl2794	-	transcriptional regulator
2795	 54.93	0	3096312..3097427	+	371	19554083	-	NCgl2795	-	hypothetical protein
2796	 50.43	-1	3097424..3097768	+	114	19554084	-	NCgl2796	-	hypothetical protein
2797	 49.02	-1	3097778..3097879	-	33	23308987	-	NCgl2797	-	hypothetical protein
2798	 58.18	+1	3097902..3098573	-	223	19554085	-	NCgl2798	-	putative phosphoglycerate mutase
2799	 61.60	+1	3098576..3099523	-	315	19554086	-	NCgl2799	-	prephenate dehydratase
2800	 57.16	0	3099557..3100702	+	381	23308988	-	NCgl2800	-	putative amidase
2801	 52.73	0	3100771..3101430	+	219	19554088	-	NCgl2801	-	hypothetical protein
2802	 59.73	+1	3101735..3102772	+	345	23308989	-	NCgl2802	-	transcriptional regulator
2803	 55.59	0	3102910..3103767	+	285	19554091	-	NCgl2803	-	hypothetical protein
2804	 56.36	0	3103927..3104256	+	109	19554092	-	NCgl2804	-	hypothetical protein
2805	 57.58	0	3104437..3105723	+	428	19554093	-	NCgl2805	-	hypothetical protein
2806	 58.99	+1	3106051..3106923	-	290	19554094	-	NCgl2806	-	hypothetical protein
2807	 51.09	0	3106949..3107770	-	273	23308990	-	NCgl2807	-	glycerophosphoryl diester phosphodiesterase
2808	 53.09	0	3108132..3109523	+	463	19554096	-	NCgl2808	-	putative gluconate permease
2809	 58.28	+1	3110462..3112321	-	619	19554097	-	NCgl2809	-	pyruvate kinase
2810	 55.77	0	3112447..3113391	-	314	19554098	ldh	NCgl2810	-	L-lactate dehydrogenase
2811	 57.17	0	3113620..3115398	+	592	19554099	-	NCgl2811	-	hypothetical protein
2812	 59.62	+1	3115408..3116046	+	212	19554100	-	NCgl2812	-	HAD superfamily hydrolase
2813	 54.21	0	3116080..3116625	+	181	19554101	-	NCgl2813	-	flavoprotein
2814	 60.78	+1	3116641..3117336	+	231	19554102	-	NCgl2814	-	transcriptional regulator
2815	 56.27	0	3117337..3118125	+	262	19554103	-	NCgl2815	-	hypothetical protein
2816	 56.99	0	3118285..3119586	+	433	19554104	-	NCgl2816	-	putative integral membrane transport protein
2817	 59.38	+1	3119621..3120883	+	420	19554105	-	NCgl2817	-	L-lactate dehydrogenase
2818	 43.04	-2	3121081..3121317	+	78	19554106	-	NCgl2818	-	hypothetical protein
2819	 44.27	-2	3121530..3121913	+	127	19554107	-	NCgl2819	-	hypothetical protein
2820	 47.52	-1	3121990..3122130	-	46	23308991	-	NCgl2820	-	hypothetical protein
2821	 56.48	0	3122554..3124173	-	539	19554108	-	NCgl2821	-	hypothetical protein
2822	 49.36	-1	3124339..3124887	-	182	19554109	-	NCgl2822	-	hypothetical protein
2823	 56.05	0	3124895..3125299	-	134	19554110	-	NCgl2823	-	putative metal-dependent hydrolase/carboxypeptidase
2824	 50.33	-1	3125344..3125496	+	50	23308992	-	NCgl2824	-	hypothetical protein
2825	 55.35	0	3125493..3126146	-	217	19554111	-	NCgl2825	-	methionine sulfoxide reductase A
2826	 56.88	0	3126393..3126995	+	200	19554112	-	NCgl2826	-	superoxide dismutase
2827	 56.74	0	3127492..3128418	-	308	19554113	-	NCgl2827	-	hypothetical protein
2828	 52.68	0	3128493..3129743	+	416	19554114	-	NCgl2828	-	putative transport protein
2829	 56.74	0	3129858..3131399	+	513	19554115	-	NCgl2829	-	hypothetical protein
2830	 58.62	+1	3131506..3132921	-	471	19554116	-	NCgl2830	-	hypothetical protein
2831	 52.83	0	3133116..3133751	+	211	19554117	-	NCgl2831	-	hypothetical protein
2832	 54.33	0	3133776..3135242	-	488	19554118	-	NCgl2832	-	putative membrane transport protein
2833	 55.34	0	3135298..3135756	+	152	19554119	-	NCgl2833	-	transcriptional regulator
2834	 60.72	+1	3135854..3136492	-	212	19554120	-	NCgl2834	-	two-component system, response regulator
2835	 53.41	0	3136591..3137925	-	444	19554121	-	NCgl2835	-	two-component system, sensory transduction histidine kinase
2836	 59.24	+1	3137924..3138475	+	183	19554122	-	NCgl2836	-	hypothetical protein
2837	 45.10	-2	3138479..3138631	-	50	19554123	-	NCgl2837	-	hypothetical protein
2838	 52.73	0	3138632..3139456	-	274	23308993	-	NCgl2838	-	hypothetical protein
2839	 52.48	0	3139688..3140956	+	422	19554125	-	NCgl2839	-	putative inner membrane protein translocase component YidC
2840	 53.74	0	3140883..3141524	-	213	19554126	-	NCgl2840	-	transcriptional regulator
2841	 47.73	-1	3141707..3141970	-	87	19554127	-	NCgl2841	-	hypothetical protein
2842	 56.07	0	3142452..3143357	-	301	19554128	-	NCgl2842	-	hypothetical protein
2843	 56.87	0	3143494..3144483	-	329	23308994	-	NCgl2843	-	alkanal monooxygenase-like protein
2844	 58.72	+1	3144662..3145630	+	322	19554131	-	NCgl2844	-	23S RNA-specific pseudouridylate synthase
2845	 45.24	-2	3151367..3151576	-	69	23308995	-	NCgl2845	-	hypothetical protein
2846	 55.46	0	3151840..3152205	-	121	19554132	-	NCgl2846	-	transcriptional regulator
2847	 54.05	0	3152414..3153832	+	472	23308996	-	NCgl2847	-	hypothetical protein
2848	 52.63	0	3153892..3154767	-	291	19554134	-	NCgl2848	-	hypothetical protein
2849	 50.64	0	3154818..3154973	+	51	23308997	-	NCgl2849	-	hypothetical protein
2850	 50.99	0	3155244..3156251	-	335	19554135	-	NCgl2850	-	transposase
2851	 58.10	0	3156304..3157248	-	314	19554136	-	NCgl2851	-	hypothetical protein
2852	 61.57	+1	3157477..3157731	-	84	19554138	-	NCgl2852	-	hypothetical protein
2853	 64.15	+2	3158125..3158838	+	237	23308998	-	NCgl2853	-	putative methyltransferase
54.31	MEAN

3.83	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.