IslandPathversion 1.0

IslandPath Analysis: Corynebacterium glutamicum ATCC 13032



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 54.31 STD DEV: 3.83
Corynebacterium glutamicum ATCC 13032, complete genome - 1..3309401
2993 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
221	 53.01	0	238218..239528	+	436	19551475	-	NCgl0221	-	Mg/Co/Ni transporter MgtE
222	 52.08	0	239935..241518	+	527	19551476	-	NCgl0222	-	di- and tricarboxylate transporter
223	 61.00	+1	241880..242902	-	340	19551477	-	NCgl0223	-	prephenate dehydrogenase
224	 51.11	0	242940..243434	+	164	19551478	-	NCgl0224	-	hypothetical protein
225	 60.21	+1	243434..243913	+	159	19551479	-	NCgl0225	-	cytosine/adenosine deaminase
226	 51.96	0	244015..244218	+	67	19551480	-	NCgl0226	-	hypothetical protein
227	 47.18	-1	244466..244819	+	117	19551481	-	NCgl0227	-	hypothetical protein
228	 53.70	0	244902..247307	+	801	19551482	-	NCgl0228	-	RND superfamily drug exporter
229	 56.32	0	247319..248575	+	418	19551483	-	NCgl0229	-	queuine/archaeosine tRNA-ribosyltransferase
230	 53.39	0	248554..249306	-	250	19551484	-	NCgl0230	-	hypothetical protein
231	 57.62	0	249428..250510	+	360	19551485	-	NCgl0231	-	malic enzyme protein
232	 54.02	0	250536..251942	+	468	19551486	-	NCgl0232	-	ABC-type multidrug/protein/lipid transport system, ATPase component
233	 60.09	+1	251952..252833	+	293	19551487	-	NCgl0233	-	glutamyl-Q tRNA(Asp) synthetase
234	 53.58	0	252827..253819	-	330	19551488	-	NCgl0234	-	dioxygenase
235	 55.80	0	254326..255438	-	370	23308781	-	NCgl0235	-	putative transposase
236	 52.61	0	255489..255794	-	101	19551490	-	NCgl0236	-	hypothetical protein
237	 53.71	0	256617..257897	+	426	19551491	-	NCgl0237	-	aspartate transaminase
238	 57.07	0	257981..258532	+	183	19551492	-	NCgl0238	-	hypothetical protein
239	 60.22	+1	258551..260878	+	775	23308782	-	NCgl0239	-	DNA polymerase III subunits gamma and tau
240	 56.41	0	260987..261298	+	103	19551494	-	NCgl0240	-	hypothetical protein
241	 60.12	+1	261402..262058	+	218	19551495	recR	NCgl0241	-	recombination protein RecR
242	 64.54	+2	262543..263295	-	250	19551496	-	NCgl0242	-	glutamine amidotransferase
243	 61.01	+1	263295..264566	-	423	19551497	-	NCgl0243	-	UDP-N-acetylmuramyl tripeptide synthase
244	 55.86	0	264596..265678	-	360	19551498	-	NCgl0244	-	DNA polymerase III subunit epsilon
245	 57.90	0	266151..267896	-	581	161486715	-	NCgl0245	-	2-isopropylmalate synthase
246	 52.87	0	268255..269124	-	289	23308783	-	NCgl0246	-	hypothetical protein
247	 53.79	0	269371..270636	+	421	19551502	-	NCgl0247	-	aspartate kinase
248	 56.43	0	270660..271694	+	344	19551503	-	NCgl0248	-	aspartate-semialdehyde dehydrogenase
249	 45.37	-2	271761..273197	+	478	19551504	-	NCgl0249	-	hypothetical protein
250	 62.89	+2	273539..274120	-	193	19551505	-	NCgl0250	-	RNA polymerase sigma factor
251	 56.67	0	274324..275874	+	516	19551506	-	NCgl0251	-	catalase
252	 57.14	0	275954..276247	-	97	19551507	-	NCgl0252	-	hypothetical protein
253	 50.11	-1	276299..276763	-	154	23308784	-	NCgl0253	-	transcriptional regulator
254	 54.17	0	276865..277584	+	239	19551509	-	NCgl0254	-	branched-chain amino acid permease
255	 48.62	-1	277581..277907	+	108	19551510	-	NCgl0255	-	hypothetical protein
256	 53.06	0	277984..278277	-	97	19551511	-	NCgl0256	-	hypothetical protein
257	 52.01	0	278385..278732	-	115	19551512	-	NCgl0257	-	transcriptional regulator
258	 49.04	-1	278859..279896	+	345	19551513	-	NCgl0258	-	arsenite efflux pump ACR3
259	 51.54	0	279893..280282	+	129	19551514	-	NCgl0259	-	protein-tyrosine-phosphatase
260	 54.83	0	280346..280666	-	106	19551515	-	NCgl0260	-	putative monovalent cation/H+ antiporter subunit G
261	 51.65	0	280667..280939	-	90	19551516	-	NCgl0261	-	putative monovalent cation/H+ antiporter subunit F
262	 56.58	0	280946..281401	-	151	19551517	-	NCgl0262	-	putative monovalent cation/H+ antiporter subunit E
263	 56.36	0	281401..282933	-	510	19551518	-	NCgl0263	-	putative monovalent cation/H+ antiporter subunit D
264	 59.38	+1	282934..283317	-	127	19551519	-	NCgl0264	-	putative monovalent cation/H+ antiporter subunit C
265	 57.06	0	283314..286208	-	964	19551520	-	NCgl0265	-	putative monovalent cation/H+ antiporter subunit A
266	 55.92	0	286382..287860	+	492	19551521	-	NCgl0266	-	hypothetical protein
267	 46.37	-2	287963..288829	-	288	19551522	-	NCgl0267	-	hypothetical protein
268	 58.74	+1	289128..289796	-	222	19551523	-	NCgl0268	-	two-component system, response regulator
269	 54.08	0	289774..291243	-	489	19551524	-	NCgl0269	-	two-component system, sensory transduction histidine kinase
270	 50.41	-1	291270..291755	-	161	19551525	-	NCgl0270	-	hypothetical protein
271	 51.05	0	291800..292420	+	206	19551526	-	NCgl0271	-	uncharacterized membrane-associated protein
272	 55.45	0	292594..293502	-	302	19551527	-	NCgl0272	-	phosphohydrolase
273	 53.07	0	293539..293994	+	151	19551528	-	NCgl0273	-	hypothetical protein
274	 55.65	0	294001..296388	-	795	19551529	-	NCgl0274	-	membrane carboxypeptidase
275	 56.70	0	297055..297405	+	116	19551530	-	NCgl0275	-	putative regulatory protein
276	 50.30	-1	297622..297786	+	54	19551531	-	NCgl0276	-	hypothetical protein
277	 56.93	0	297792..298253	+	153	19551532	-	NCgl0277	-	putative translation initiation inhibitor
278	 56.27	0	298329..299684	-	451	23308785	-	NCgl0278	-	major facilitator superfamily permease
279	 54.26	0	299723..301261	-	512	19551534	-	NCgl0279	-	acyl-CoA synthetase
280	 52.13	0	301509..302024	-	171	19551535	-	NCgl0280	-	ranscriptional regulator
281	 56.62	0	302167..303102	+	311	19551536	-	NCgl0281	-	dehydrogenase
282	 54.07	0	303133..304077	+	314	19551537	-	NCgl0282	-	metal-dependent hydrolase of the TIM-barrel fold
283	 54.14	0	304070..305266	+	398	19551538	-	NCgl0283	-	acyl-CoA dehydrogenase
284	 58.44	+1	305288..305761	+	157	19551539	-	NCgl0284	-	acyl dehydratase
285	 54.96	0	305858..306703	+	281	19551540	-	NCgl0285	-	Zn-dependent hydrolase
286	 59.36	+1	306779..307462	-	227	19551541	-	NCgl0286	-	cAMP-binding domain-containing protein
287	 48.92	-1	307724..307909	-	61	19551542	-	NCgl0287	-	hypothetical protein
288	 55.43	0	307955..308737	+	260	19551543	-	NCgl0288	-	EndoIII-related endonuclease
289	 60.61	+1	308745..309305	+	186	19551544	-	NCgl0289	-	thiol-disulfide isomerase
290	 60.48	+1	309298..310041	+	247	19551545	-	NCgl0290	-	NTP pyrophosphohydrolase
291	 59.23	+1	310132..311328	+	398	19551546	-	NCgl0291	-	trypsin-like serine protease
292	 60.34	+1	311896..312891	-	331	19551547	-	NCgl0292	-	hydrolase or acyltransferase
293	 56.70	0	312906..313457	-	183	19551548	-	NCgl0293	-	hypothetical protein
294	 57.65	0	313622..314464	-	280	19551549	-	NCgl0294	-	phosphoserine phosphatase
295	 56.87	0	314944..316005	+	353	19551550	-	NCgl0295	-	hypothetical protein
296	 58.73	+1	316002..317135	+	377	23308786	-	NCgl0297	-	ATPase involved in pili and flagella biosynthesis
297	 59.07	+1	317120..317896	+	258	23308787	-	NCgl0296	-	hypothetical protein
298	 54.51	0	317893..318468	+	191	19551553	-	NCgl0298	-	hypothetical protein
299	 53.23	0	318492..318692	+	66	19551554	-	NCgl0299	-	hypothetical protein
300	 58.88	+1	318696..319016	+	106	19551555	-	NCgl0300	-	hypothetical protein
301	 60.33	+1	319039..319338	+	99	19551556	-	NCgl0301	-	hypothetical protein
302	 57.76	0	319333..321690	-	785	19551557	-	NCgl0302	-	helicase
303	 57.84	0	322007..322210	+	67	19551558	-	NCgl0303	-	cold shock protein
304	 57.64	0	322910..325900	+	996	19551559	-	NCgl0304	-	DNA topoisomerase I
305	 54.48	0	325904..326617	+	237	19551560	-	NCgl0305	-	hypothetical protein
306	 58.18	+1	326692..328152	-	486	19551561	-	NCgl0306	-	adenylate cyclase
307	 57.94	0	328283..329542	+	419	23308788	-	NCgl0307	-	DNA polymerase III subunit delta'
308	 47.43	-1	329933..330379	+	148	19551563	-	NCgl0308	-	uncharacterized phage-associated protein
309	 51.24	0	330973..331536	+	187	19551565	-	NCgl0309	-	putative adenylate kinase
310	 55.71	0	331552..332436	+	294	19551566	-	NCgl0310	-	23S RNA-specific pseudouridylate synthase
311	 56.22	0	332919..334565	+	548	19551567	-	NCgl0311	-	beta-glucosidase-related glycosidase
312	 54.66	0	334549..334956	+	135	19551568	-	NCgl0312	-	hypothetical protein
313	 55.92	0	335009..336115	+	368	19551569	-	NCgl0313	-	class III Zn-dependent alcohol dehydrogenase
314	 53.14	0	336116..336751	+	211	19551570	-	NCgl0314	-	Zn-dependent hydrolase or glyoxylase
315	 54.02	0	336781..337452	+	223	23308789	-	NCgl0315	-	dehydrogenase
316	 52.55	0	337539..338771	+	410	19551572	-	NCgl0316	-	major facilitator superfamily permease
317	 55.98	0	338793..339728	+	311	19551573	-	NCgl0317	-	nucleoside-diphosphate-sugar epimerase
318	 55.82	0	340192..340569	-	125	19551574	-	NCgl0318	-	hypothetical protein
319	 55.56	0	340566..341276	-	236	19551575	-	NCgl0319	-	glycosyltransferase involved in cell wall biogenesis
320	 59.82	+1	341356..342378	+	340	19551576	-	NCgl0320	-	hypothetical protein
54.31	MEAN

3.83	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.