IslandPath Analysis: Corynebacterium glutamicum ATCC 13032



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 54.31   STD DEV: 3.83
Corynebacterium glutamicum ATCC 13032, complete genome - 1..3309401
2993 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2562	 58.77	+1	2820576..2822195	+	539	19553849	-	NCgl2562	-	ABC-type transporter, periplasmic component
2563	 54.93	0	2822388..2823341	+	317	23308962	-	NCgl2563	-	ABC-type transporter, permease component
2564	 54.72	0	2824275..2825345	+	356	23308963	-	NCgl2564	-	ABC-type transporter, ATPase component
2565	 55.19	0	2825342..2826160	+	272	19553852	-	NCgl2565	-	ABC-type transporter, ATPase component
2566	 51.12	0	2826213..2826836	-	207	19553853	-	NCgl2566	-	putative threonine efflux protein
2567	 49.50	-1	2826908..2827408	+	166	19553854	-	NCgl2567	-	transcriptional regulator
2568	 47.11	-1	2827456..2827818	-	120	19553855	-	NCgl2568	-	hypothetical protein
2569	 56.31	0	2827902..2828384	-	160	19553856	ispF	NCgl2569	-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
2570	 59.27	+1	2828377..2829147	-	256	19553857	ispD	NCgl2570	-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
2571	 56.45	0	2829154..2829750	-	198	19553858	-	NCgl2571	-	transcriptional regulator
2572	 53.72	0	2830058..2830783	+	241	19553859	-	NCgl2572	-	two-component system, response regulator
2573	 57.64	0	2830780..2831898	+	372	19553860	-	NCgl2573	-	two-component system, sensory transduction histidine kinase
2574	 58.80	+1	2832086..2832670	+	194	19553861	-	NCgl2574	-	hypothetical protein
2575	 57.78	0	2832791..2834185	+	464	23308964	-	NCgl2575	-	DNA repair protein RadA
2576	 54.04	0	2834189..2835289	+	366	19553863	-	NCgl2576	-	DNA integrity scanning protein DisA
2577	 51.74	0	2835281..2835970	-	229	23308965	-	NCgl2577	-	hypothetical protein
2578	 53.54	0	2836046..2837500	-	484	19553865	-	NCgl2578	-	NAD-dependent aldehyde dehydrogenase
2579	 51.12	0	2837954..2838577	-	207	19553866	-	NCgl2579	-	carbonic anhydrase
2580	 57.48	0	2838644..2839525	+	293	19553867	-	NCgl2580	-	A/G-specific DNA glycosylase
2581	 49.14	-1	2839563..2840720	+	385	19553868	-	NCgl2581	-	hypothetical protein
2582	 51.09	0	2841076..2841852	+	258	19553869	-	NCgl2582	-	L-2,3-butanediol dehydrogenase
2583	 45.43	-2	2842494..2843237	+	247	19553870	-	NCgl2583	-	hypothetical protein
2584	 49.32	-1	2843430..2843723	-	97	19553871	-	NCgl2584	-	hypothetical protein
2585	 56.66	0	2844164..2846941	-	925	19553872	-	NCgl2585	-	ATPase with chaperone activity, ATP-binding subunit
2586	 60.11	+1	2847230..2848663	+	477	19553873	-	NCgl2586	-	inositol-5-monophosphate dehydrogenase
2587	 53.35	0	2848770..2849783	+	337	23308966	-	NCgl2587	-	AraC-type DNA-binding domain-containing protein
2588	 55.47	0	2849936..2851819	+	627	19553875	-	NCgl2588	-	phenol 2-monooxygenase
2589	 49.80	-1	2852018..2853736	+	572	19553876	-	NCgl2589	-	hypothetical protein
2590	 49.13	-1	2853770..2855713	+	647	19553877	-	NCgl2590	-	hypothetical protein
2591	 47.88	-1	2855796..2857520	+	574	19553878	-	NCgl2591	-	hypothetical protein
2592	 52.70	0	2857611..2859056	-	481	19553879	-	NCgl2592	-	major facilitator superfamily permease
2593	 50.00	-1	2859193..2860146	-	317	19553880	-	NCgl2593	-	hypothetical protein
2594	 58.06	0	2860503..2862083	-	526	19553881	lysS	NCgl2594	-	lysyl-tRNA synthetase
2595	 57.18	0	2862130..2862930	-	266	19553882	panC	NCgl2595	-	pantoate--beta-alanine ligase
2596	 56.61	0	2862927..2863622	-	231	19553883	-	NCgl2596	-	hypothetical protein
2597	 54.93	0	2863622..2864422	-	266	23308967	-	NCgl2597	-	hypothetical protein
2598	 55.77	0	2864382..2864849	-	155	19553885	-	NCgl2598	-	hypothetical protein
2599	 53.54	0	2864865..2865344	-	159	19553886	-	NCgl2599	-	7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase
2600	 53.18	0	2865344..2865736	-	130	19553887	-	NCgl2600	-	dihydroneopterin aldolase
2601	 59.40	+1	2865729..2866568	-	279	23308968	-	NCgl2601	-	dihydropteroate synthase
2602	 57.43	0	2866584..2867189	-	201	19553889	folE	NCgl2602	-	GTP cyclohydrolase I
2603	 58.08	0	2867167..2869728	-	853	19553890	-	NCgl2603	-	cell division protein
2604	 53.90	0	2869861..2870463	-	200	19553891	-	NCgl2604	-	hypoxanthine-guanine phosphoribosyltransferase
2605	 59.89	+1	2870497..2871441	-	314	19553892	-	NCgl2605	-	ATPase
2606	 56.00	0	2871443..2872726	-	427	19553893	-	NCgl2606	-	D-alanyl-D-alanine carboxypeptidase
2607	 55.56	0	2872927..2873403	+	158	19553894	-	NCgl2607	-	inorganic pyrophosphatase
2608	 55.51	0	2873903..2875444	-	513	19553895	-	NCgl2608	-	spermidine synthase
2609	 53.52	0	2875432..2875857	-	141	19553896	-	NCgl2609	-	hypothetical protein
2610	 58.70	+1	2875868..2876281	-	137	19553897	-	NCgl2610	-	hypothetical protein
2611	 57.49	0	2876278..2876778	-	166	19553898	-	NCgl2611	-	hypothetical protein
2612	 54.41	0	2876775..2877386	-	203	19553899	-	NCgl2612	-	hypothetical protein
2613	 50.79	0	2877453..2877704	-	83	19553900	-	NCgl2613	-	hypothetical protein
2614	 50.56	0	2877593..2877859	-	88	23308969	-	NCgl2614	-	hypothetical protein
2615	 53.32	0	2878476..2879711	-	411	19553902	-	NCgl2615	-	uncharacterized NAD(FAD)-dependent dehydrogenase
2616	 54.98	0	2879966..2880256	+	96	19553903	-	NCgl2616	-	rhodanese-related sulfurtransferase
2617	 51.90	0	2880545..2880991	+	148	19553904	-	NCgl2617	-	hypothetical protein
2618	 58.51	+1	2880999..2884886	+	1295	19553905	-	NCgl2618	-	non-ribosomal peptide synthetase
2619	 54.41	0	2884933..2886498	-	521	19553906	gabD2	NCgl2619	-	succinic semialdehyde dehydrogenase
2620	 53.31	0	2886914..2887834	-	306	19553907	-	NCgl2620	-	hypothetical protein
2621	 57.92	0	2888895..2890541	-	548	19553910	groEL	NCgl2621	-	chaperonin GroEL
2622	 53.55	0	2890749..2890931	-	60	19553911	-	NCgl2622	-	hypothetical protein
2623	 52.23	0	2890928..2892139	-	403	19553912	-	NCgl2623	-	hypothetical protein
2624	 51.14	0	2892136..2893101	-	321	19553913	-	NCgl2624	-	hypothetical protein
2625	 50.37	-1	2893098..2894993	-	631	19553914	-	NCgl2625	-	hypothetical protein
2626	 53.44	0	2895070..2897526	-	818	19553915	-	NCgl2626	-	hypothetical protein
2627	 52.07	0	2897526..2900327	-	933	19553916	-	NCgl2627	-	hypothetical protein
2628	 55.54	0	2900328..2903921	-	1197	19553917	-	NCgl2628	-	hypothetical protein
2629	 57.27	0	2903962..2906643	-	893	19553918	-	NCgl2629	-	hypothetical protein
2630	 54.96	0	2906637..2907251	-	204	19553919	-	NCgl2630	-	hypothetical protein
2631	 57.86	0	2907516..2908889	+	457	19553920	-	NCgl2631	-	hypothetical protein
2632	 58.82	+1	2909232..2909792	+	186	19553921	-	NCgl2632	-	hypothetical protein
2633	 55.07	0	2910173..2913232	+	1019	19553922	-	NCgl2633	-	putative monovalent cation/H+ antiporter subunit A
2634	 55.69	0	2913236..2913727	+	163	19553923	-	NCgl2634	-	putative monovalent cation/H+ antiporter subunit C
2635	 56.61	0	2913750..2915420	+	556	23308970	-	NCgl2635	-	putative monovalent cation/H+ antiporter subunit D
2636	 55.88	0	2915417..2915926	+	169	19553925	-	NCgl2636	-	putative monovalent cation/H+ antiporter subunit E
2637	 54.35	0	2915930..2916205	+	91	19553926	-	NCgl2637	-	putative monovalent cation/H+ antiporter subunit F
2638	 54.33	0	2916206..2916586	+	126	19553927	-	NCgl2638	-	putative monovalent cation/H+ antiporter subunit G
2639	 53.50	0	2917022..2917621	-	199	19553928	-	NCgl2639	-	hypothetical protein
2640	 54.20	0	2917628..2918758	-	376	19553929	-	NCgl2640	-	carboxylate-amine ligase
2641	 56.91	0	2918817..2919482	-	221	19553930	-	NCgl2641	-	hypothetical protein
2642	 52.11	0	2919488..2919700	-	70	19553931	-	NCgl2642	-	hypothetical protein
2643	 52.23	0	2919716..2920297	+	193	19553932	def	NCgl2643	-	peptide deformylase
2644	 58.53	+1	2920287..2921294	+	335	19553933	-	NCgl2644	-	histone acetyltransferase HPA2-like protein
2645	 55.05	0	2921321..2922112	+	263	19553934	-	NCgl2645	-	exonuclease III
2646	 57.02	0	2922119..2923621	+	500	19553935	-	NCgl2646	-	cardiolipin synthase
2647	 52.05	0	2923952..2925148	-	398	19553936	-	NCgl2647	-	major facilitator superfamily permease
2648	 49.44	-1	2925542..2926708	+	388	19553937	-	NCgl2648	-	Na+/phosphate symporter
2649	 54.69	0	2926705..2927547	-	280	23308971	-	NCgl2649	-	epimerase
2650	 52.66	0	2927549..2928319	-	256	23308972	-	NCgl2650	-	ABC-type transporter, permease component
2651	 54.13	0	2928300..2929232	-	310	19553940	-	NCgl2651	-	ABC-type transporter, ATPase component
2652	 54.76	0	2929254..2929757	-	167	19553941	-	NCgl2652	-	NTP pyrophosphohydrolase
2653	 53.28	0	2929952..2931340	+	462	23308973	-	NCgl2653	-	hypothetical protein
2654	 54.20	0	2931341..2932375	+	344	19553943	-	NCgl2654	-	ABC-type transport system, periplasmic component
2655	 58.65	+1	2932365..2934833	+	822	19553944	-	NCgl2655	-	serine/threonine protein kinase
2656	 51.84	0	2935313..2936506	-	397	19553945	-	NCgl2656	-	acetate kinase
2657	 56.06	0	2936506..2937891	-	461	19553946	eutD	NCgl2657	-	phosphotransacetylase
2658	 55.34	0	2938404..2939771	+	455	19553947	-	NCgl2658	-	putative ferredoxin/ferredoxin-NADP reductase
2659	 57.74	0	2939908..2940456	+	182	19553948	-	NCgl2659	-	acyltransferase
2660	 55.39	0	2940445..2941455	-	336	19553949	-	NCgl2660	-	hypothetical protein
2661	 52.75	0	2941470..2942468	-	332	19553950	-	NCgl2661	-	hypothetical protein
54.31	MEAN

3.83	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.