IslandPathversion 1.0

IslandPath Analysis: Corynebacterium glutamicum ATCC 13032



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 54.31 STD DEV: 3.83
Corynebacterium glutamicum ATCC 13032, complete genome - 1..3309401
2993 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2517	 55.21	0	2772642..2774099	-	485	19553805	-	NCgl2517	-	two-component system, sensory transduction histidine kinase
2518	 55.79	0	2774108..2774815	-	235	19553806	-	NCgl2518	-	two-component system, response regulator
2519	 54.23	0	2774935..2775690	-	251	19553807	-	NCgl2519	-	transcriptional regulator
2520	 53.29	0	2775738..2776769	-	343	19553808	-	NCgl2520	-	hypothetical protein
2521	 52.24	0	2776766..2778505	-	579	19553809	-	NCgl2521	-	pyruvate dehydrogenase
2522	 53.74	0	2778966..2780450	+	494	19553810	-	NCgl2522	-	major facilitator superfamily permease
2523	 55.24	0	2780440..2780973	+	177	23308956	-	NCgl2523	-	transcriptional regulator
2524	 54.04	0	2780997..2782319	+	440	19553812	-	NCgl2524	-	major facilitator superfamily permease
2525	 53.45	0	2782338..2784470	-	710	19553813	-	NCgl2525	-	hypothetical protein
2526	 56.80	0	2784654..2785616	-	320	19553814	-	NCgl2526	-	succinate dehydrogenase/fumarate reductase, flavoprotein subunit
2527	 54.10	0	2785649..2786356	-	235	19553815	-	NCgl2527	-	transcriptional regulator
2528	 60.02	+1	2786754..2787716	-	320	23308957	-	NCgl2528	-	D-2-hydroxyisocaproate dehydrogenase
2529	 51.84	0	2787783..2788598	+	271	19553817	-	NCgl2529	-	hypothetical protein
2530	 55.51	0	2788585..2789400	-	271	19553818	-	NCgl2530	-	HAD superfamily hydrolase
2531	 53.03	0	2789475..2789936	-	153	19553819	-	NCgl2531	-	hypothetical protein
2532	 43.75	-2	2790219..2790554	+	111	19553820	-	NCgl2532	-	hypothetical protein
2533	 51.43	0	2790983..2792452	+	489	19553821	-	NCgl2533	-	hypothetical protein
2534	 51.82	0	2792532..2792861	+	109	19553822	-	NCgl2534	-	hypothetical protein
2535	 54.18	0	2792874..2794331	+	485	19553823	-	NCgl2535	-	trehalose-6-phosphate synthase
2536	 48.67	-1	2794328..2794816	+	162	19553824	-	NCgl2536	-	hypothetical protein
2537	 51.62	0	2794871..2795641	+	256	19553825	-	NCgl2537	-	trehalose-6-phosphatase
2538	 55.68	0	2795674..2796756	-	360	19553826	-	NCgl2538	-	transcriptional regulator
2539	 53.77	0	2796857..2797810	+	317	19553827	-	NCgl2539	-	ABC-type transporter, periplasmic component
2540	 59.02	+1	2797821..2798513	+	230	19553828	-	NCgl2540	-	ABC-type transporter, ATPase component
2541	 60.77	+1	2798514..2799395	+	293	19553829	-	NCgl2541	-	ABC-type transporter, permease component
2542	 53.18	0	2799593..2801038	+	481	19553830	-	NCgl2542	-	transposase
2543	 50.98	0	2801114..2801317	+	67	23308958	-	NCgl2543	-	hypothetical protein
2544	 55.61	0	2801556..2803247	-	563	19553831	-	NCgl2544	-	hypothetical protein
2545	 58.27	+1	2803248..2803997	-	249	19553832	-	NCgl2545	-	hypothetical protein
2546	 56.36	0	2804072..2804692	-	206	19553833	-	NCgl2546	-	hypothetical protein
2547	 57.31	0	2804674..2805111	-	145	19553834	-	NCgl2547	-	hypothetical protein
2548	 54.66	0	2805111..2805968	-	285	19553835	-	NCgl2548	-	hypothetical protein
2549	 56.88	0	2806014..2806442	-	142	19553836	-	NCgl2549	-	hypothetical protein
2550	 52.82	0	2806597..2807253	-	218	23308959	-	NCgl2550	-	transcriptional regulator
2551	 57.43	0	2807424..2808365	-	313	19553838	-	NCgl2551	-	rRNA methylase
2552	 52.42	0	2808397..2809779	-	460	19553839	cysS	NCgl2552	-	cysteinyl-tRNA synthetase
2553	 53.68	0	2809822..2811807	-	661	19553840	-	NCgl2553	-	phosphotransferase system IIC component
2554	 54.76	0	2811958..2813259	-	433	23308960	-	NCgl2554	-	beta-fructosidase
2555	 52.36	0	2813277..2814038	-	253	19553842	-	NCgl2555	-	glucosamine-6-phosphate isomerase
2556	 53.59	0	2814079..2815233	-	384	23308961	-	NCgl2556	-	N-acetylglucosamine-6-phosphate deacetylase
2557	 56.66	0	2815459..2816397	+	312	19553844	-	NCgl2557	-	putative dihydrodipicolinate synthase
2558	 56.14	0	2816410..2817321	+	303	19553845	-	NCgl2558	-	transcriptional regulator
2559	 56.65	0	2817364..2818062	+	232	19553846	-	NCgl2559	-	N-acetylmannosamine-6-phosphate 2-epimerase
2560	 58.62	+1	2818348..2819565	-	405	19553847	-	NCgl2560	-	hypothetical protein
2561	 55.05	0	2819555..2820277	-	240	19553848	-	NCgl2561	-	transcriptional regulator
2562	 58.77	+1	2820576..2822195	+	539	19553849	-	NCgl2562	-	ABC-type transporter, periplasmic component
2563	 54.93	0	2822388..2823341	+	317	23308962	-	NCgl2563	-	ABC-type transporter, permease component
2564	 54.72	0	2824275..2825345	+	356	23308963	-	NCgl2564	-	ABC-type transporter, ATPase component
2565	 55.19	0	2825342..2826160	+	272	19553852	-	NCgl2565	-	ABC-type transporter, ATPase component
2566	 51.12	0	2826213..2826836	-	207	19553853	-	NCgl2566	-	putative threonine efflux protein
2567	 49.50	-1	2826908..2827408	+	166	19553854	-	NCgl2567	-	transcriptional regulator
2568	 47.11	-1	2827456..2827818	-	120	19553855	-	NCgl2568	-	hypothetical protein
2569	 56.31	0	2827902..2828384	-	160	19553856	ispF	NCgl2569	-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
2570	 59.27	+1	2828377..2829147	-	256	19553857	ispD	NCgl2570	-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
2571	 56.45	0	2829154..2829750	-	198	19553858	-	NCgl2571	-	transcriptional regulator
2572	 53.72	0	2830058..2830783	+	241	19553859	-	NCgl2572	-	two-component system, response regulator
2573	 57.64	0	2830780..2831898	+	372	19553860	-	NCgl2573	-	two-component system, sensory transduction histidine kinase
2574	 58.80	+1	2832086..2832670	+	194	19553861	-	NCgl2574	-	hypothetical protein
2575	 57.78	0	2832791..2834185	+	464	23308964	-	NCgl2575	-	DNA repair protein RadA
2576	 54.04	0	2834189..2835289	+	366	19553863	-	NCgl2576	-	DNA integrity scanning protein DisA
2577	 51.74	0	2835281..2835970	-	229	23308965	-	NCgl2577	-	hypothetical protein
2578	 53.54	0	2836046..2837500	-	484	19553865	-	NCgl2578	-	NAD-dependent aldehyde dehydrogenase
2579	 51.12	0	2837954..2838577	-	207	19553866	-	NCgl2579	-	carbonic anhydrase
2580	 57.48	0	2838644..2839525	+	293	19553867	-	NCgl2580	-	A/G-specific DNA glycosylase
2581	 49.14	-1	2839563..2840720	+	385	19553868	-	NCgl2581	-	hypothetical protein
2582	 51.09	0	2841076..2841852	+	258	19553869	-	NCgl2582	-	L-2,3-butanediol dehydrogenase
2583	 45.43	-2	2842494..2843237	+	247	19553870	-	NCgl2583	-	hypothetical protein
2584	 49.32	-1	2843430..2843723	-	97	19553871	-	NCgl2584	-	hypothetical protein
2585	 56.66	0	2844164..2846941	-	925	19553872	-	NCgl2585	-	ATPase with chaperone activity, ATP-binding subunit
2586	 60.11	+1	2847230..2848663	+	477	19553873	-	NCgl2586	-	inositol-5-monophosphate dehydrogenase
2587	 53.35	0	2848770..2849783	+	337	23308966	-	NCgl2587	-	AraC-type DNA-binding domain-containing protein
2588	 55.47	0	2849936..2851819	+	627	19553875	-	NCgl2588	-	phenol 2-monooxygenase
2589	 49.80	-1	2852018..2853736	+	572	19553876	-	NCgl2589	-	hypothetical protein
2590	 49.13	-1	2853770..2855713	+	647	19553877	-	NCgl2590	-	hypothetical protein
2591	 47.88	-1	2855796..2857520	+	574	19553878	-	NCgl2591	-	hypothetical protein
2592	 52.70	0	2857611..2859056	-	481	19553879	-	NCgl2592	-	major facilitator superfamily permease
2593	 50.00	-1	2859193..2860146	-	317	19553880	-	NCgl2593	-	hypothetical protein
2594	 58.06	0	2860503..2862083	-	526	19553881	lysS	NCgl2594	-	lysyl-tRNA synthetase
2595	 57.18	0	2862130..2862930	-	266	19553882	panC	NCgl2595	-	pantoate--beta-alanine ligase
2596	 56.61	0	2862927..2863622	-	231	19553883	-	NCgl2596	-	hypothetical protein
2597	 54.93	0	2863622..2864422	-	266	23308967	-	NCgl2597	-	hypothetical protein
2598	 55.77	0	2864382..2864849	-	155	19553885	-	NCgl2598	-	hypothetical protein
2599	 53.54	0	2864865..2865344	-	159	19553886	-	NCgl2599	-	7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase
2600	 53.18	0	2865344..2865736	-	130	19553887	-	NCgl2600	-	dihydroneopterin aldolase
2601	 59.40	+1	2865729..2866568	-	279	23308968	-	NCgl2601	-	dihydropteroate synthase
2602	 57.43	0	2866584..2867189	-	201	19553889	folE	NCgl2602	-	GTP cyclohydrolase I
2603	 58.08	0	2867167..2869728	-	853	19553890	-	NCgl2603	-	cell division protein
2604	 53.90	0	2869861..2870463	-	200	19553891	-	NCgl2604	-	hypoxanthine-guanine phosphoribosyltransferase
2605	 59.89	+1	2870497..2871441	-	314	19553892	-	NCgl2605	-	ATPase
2606	 56.00	0	2871443..2872726	-	427	19553893	-	NCgl2606	-	D-alanyl-D-alanine carboxypeptidase
2607	 55.56	0	2872927..2873403	+	158	19553894	-	NCgl2607	-	inorganic pyrophosphatase
2608	 55.51	0	2873903..2875444	-	513	19553895	-	NCgl2608	-	spermidine synthase
2609	 53.52	0	2875432..2875857	-	141	19553896	-	NCgl2609	-	hypothetical protein
2610	 58.70	+1	2875868..2876281	-	137	19553897	-	NCgl2610	-	hypothetical protein
2611	 57.49	0	2876278..2876778	-	166	19553898	-	NCgl2611	-	hypothetical protein
2612	 54.41	0	2876775..2877386	-	203	19553899	-	NCgl2612	-	hypothetical protein
2613	 50.79	0	2877453..2877704	-	83	19553900	-	NCgl2613	-	hypothetical protein
2614	 50.56	0	2877593..2877859	-	88	23308969	-	NCgl2614	-	hypothetical protein
2615	 53.32	0	2878476..2879711	-	411	19553902	-	NCgl2615	-	uncharacterized NAD(FAD)-dependent dehydrogenase
2616	 54.98	0	2879966..2880256	+	96	19553903	-	NCgl2616	-	rhodanese-related sulfurtransferase
54.31	MEAN

3.83	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.