IslandPathversion 1.0

IslandPath Analysis: Corynebacterium glutamicum ATCC 13032



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 54.31 STD DEV: 3.83
Corynebacterium glutamicum ATCC 13032, complete genome - 1..3309401
2993 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2468	 53.60	0	2711851..2712378	+	175	19553754	-	NCgl2468	-	hypothetical protein
2469	 44.95	-2	2717991..2718188	-	65	23308949	-	NCgl2469	-	hypothetical protein
2470	 53.78	0	2718434..2719690	-	418	19553755	-	NCgl2470	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
2471	 52.18	0	2719751..2720323	+	190	19553756	-	NCgl2471	-	hypothetical protein
2472	 57.45	0	2720383..2721228	-	281	19553757	-	NCgl2472	-	regulatory-like protein
2473	 58.20	+1	2721905..2722861	+	318	19553758	-	NCgl2473	-	cysteine synthase
2474	 57.01	0	2723065..2723613	+	182	19553759	-	NCgl2474	-	serine acetyltransferase
2475	 46.74	-1	2723768..2724058	-	96	19553760	-	NCgl2475	-	acetyltransferase
2476	 52.43	0	2724476..2725360	-	294	19553761	-	NCgl2476	-	succinyl-CoA synthetase subunit alpha
2477	 54.14	0	2725382..2726578	-	398	23308950	sucC	NCgl2477	-	succinyl-CoA synthetase subunit beta
2478	 55.42	0	2727397..2728134	-	245	19553763	-	NCgl2478	-	dithiol-disulfide isomerase
2479	 58.66	+1	2728205..2728891	-	228	19553764	-	NCgl2479	-	hypothetical protein
2480	 56.33	0	2729376..2730884	-	502	19553765	-	NCgl2480	-	acetyl-CoA hydrolase
2481	 56.98	0	2731377..2732522	+	381	23308951	-	NCgl2481	-	TIM-barrel containing enzyme
2482	 54.15	0	2732637..2733371	+	244	23308952	-	NCgl2482	-	phosphate uptake regulator
2483	 55.56	0	2733453..2734226	-	257	19553768	-	NCgl2483	-	ABC-type transporter, ATPase component
2484	 56.28	0	2734262..2735185	-	307	19553769	-	NCgl2484	-	ABC-type transporter, permease component
2485	 55.06	0	2735200..2736216	-	338	23308953	-	NCgl2485	-	ABC-type transporter, permease component
2486	 57.45	0	2736412..2737539	-	375	19553771	-	NCgl2486	-	ABC-type transporter, periplasmic component
2487	 52.79	0	2737834..2738712	-	292	19553772	-	NCgl2487	-	histone acetyltransferase HPA2-like protein
2488	 58.53	+1	2738796..2739557	+	253	19553773	-	NCgl2488	-	hypothetical protein
2489	 52.73	0	2739554..2740672	-	372	19553774	-	NCgl2489	-	hypothetical protein
2490	 59.86	+1	2740671..2741360	+	229	19553775	-	NCgl2490	-	hypothetical protein
2491	 55.87	0	2741634..2742578	-	314	23308954	-	NCgl2491	-	4-amino-4-deoxychorismate lyase
2492	 55.97	0	2742668..2743789	+	373	19553777	-	NCgl2492	-	aminomethyltransferase related to GcvT
2493	 56.48	0	2744011..2744226	+	71	19553778	-	NCgl2493	-	hypothetical protein
2494	 59.52	+1	2744879..2745955	-	358	19553779	-	NCgl2494	-	phosphoribosylaminoimidazole synthetase
2495	 57.24	0	2746081..2747628	-	515	19553780	-	NCgl2495	-	amidophosphoribosyltransferase
2496	 56.61	0	2747681..2748058	-	125	19553781	-	NCgl2496	-	hypothetical protein
2497	 55.59	0	2748096..2749115	+	339	19553782	-	NCgl2497	-	acyl-CoA hydrolase
2498	 55.56	0	2749160..2749924	-	254	19553783	-	NCgl2498	-	membrane proteins
2499	 58.76	+1	2750025..2752313	-	762	19553784	-	NCgl2499	-	phosphoribosylformylglycinamidine synthase II
2500	 56.99	0	2752325..2752996	-	223	19553785	-	NCgl2500	-	phosphoribosylformylglycinamidine synthase subunit I
2501	 55.28	0	2752993..2753238	-	81	19553786	-	NCgl2501	-	phosphoribosylformylglycinamidine synthase subunit PurS
2502	 51.25	0	2753326..2753805	-	159	19553787	-	NCgl2502	-	glutathione peroxidase
2503	 57.03	0	2753993..2756743	+	916	19553788	-	NCgl2503	-	extracellular nuclease
2504	 52.87	0	2756957..2757130	+	57	19553789	-	NCgl2504	-	hypothetical protein
2505	 54.64	0	2757127..2757816	-	229	19553790	-	NCgl2505	-	deacetylase
2506	 51.45	0	2757861..2759201	-	446	19553791	-	NCgl2506	-	Na+/H+-dicarboxylate symporter
2507	 55.16	0	2759530..2761650	-	706	19553792	-	NCgl2507	-	protease II
2508	 53.24	0	2761783..2762676	-	297	19553793	hemH	NCgl2508	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
2509	 58.00	0	2763502..2764932	-	476	19553796	-	NCgl2509	-	adenylosuccinate lyase
2510	 54.61	0	2764976..2766136	-	386	23308955	-	NCgl2510	-	PLP-dependent aminotransferase
2511	 56.64	0	2766156..2767421	-	421	19553798	-	NCgl2511	-	phosphoribosylamine--glycine ligase
2512	 54.50	0	2767587..2767997	+	136	19553799	-	NCgl2512	-	diadenosine tetraphosphate (Ap4A) hydrolase
2513	 51.98	0	2768341..2769096	-	251	19553801	-	NCgl2513	-	SAM-dependent methyltransferase
2514	 53.03	0	2769154..2770539	-	461	19553802	-	NCgl2514	-	dipeptide/tripeptide permease
2515	 54.48	0	2770715..2771986	+	423	19553803	-	NCgl2515	-	adenosylmethionine--8-amino-7-oxononanoate transaminase
2516	 52.44	0	2771990..2772664	+	224	19553804	bioD	NCgl2516	-	dithiobiotin synthetase
2517	 55.21	0	2772642..2774099	-	485	19553805	-	NCgl2517	-	two-component system, sensory transduction histidine kinase
2518	 55.79	0	2774108..2774815	-	235	19553806	-	NCgl2518	-	two-component system, response regulator
2519	 54.23	0	2774935..2775690	-	251	19553807	-	NCgl2519	-	transcriptional regulator
2520	 53.29	0	2775738..2776769	-	343	19553808	-	NCgl2520	-	hypothetical protein
2521	 52.24	0	2776766..2778505	-	579	19553809	-	NCgl2521	-	pyruvate dehydrogenase
2522	 53.74	0	2778966..2780450	+	494	19553810	-	NCgl2522	-	major facilitator superfamily permease
2523	 55.24	0	2780440..2780973	+	177	23308956	-	NCgl2523	-	transcriptional regulator
2524	 54.04	0	2780997..2782319	+	440	19553812	-	NCgl2524	-	major facilitator superfamily permease
2525	 53.45	0	2782338..2784470	-	710	19553813	-	NCgl2525	-	hypothetical protein
2526	 56.80	0	2784654..2785616	-	320	19553814	-	NCgl2526	-	succinate dehydrogenase/fumarate reductase, flavoprotein subunit
2527	 54.10	0	2785649..2786356	-	235	19553815	-	NCgl2527	-	transcriptional regulator
2528	 60.02	+1	2786754..2787716	-	320	23308957	-	NCgl2528	-	D-2-hydroxyisocaproate dehydrogenase
2529	 51.84	0	2787783..2788598	+	271	19553817	-	NCgl2529	-	hypothetical protein
2530	 55.51	0	2788585..2789400	-	271	19553818	-	NCgl2530	-	HAD superfamily hydrolase
2531	 53.03	0	2789475..2789936	-	153	19553819	-	NCgl2531	-	hypothetical protein
2532	 43.75	-2	2790219..2790554	+	111	19553820	-	NCgl2532	-	hypothetical protein
2533	 51.43	0	2790983..2792452	+	489	19553821	-	NCgl2533	-	hypothetical protein
2534	 51.82	0	2792532..2792861	+	109	19553822	-	NCgl2534	-	hypothetical protein
2535	 54.18	0	2792874..2794331	+	485	19553823	-	NCgl2535	-	trehalose-6-phosphate synthase
2536	 48.67	-1	2794328..2794816	+	162	19553824	-	NCgl2536	-	hypothetical protein
2537	 51.62	0	2794871..2795641	+	256	19553825	-	NCgl2537	-	trehalose-6-phosphatase
2538	 55.68	0	2795674..2796756	-	360	19553826	-	NCgl2538	-	transcriptional regulator
2539	 53.77	0	2796857..2797810	+	317	19553827	-	NCgl2539	-	ABC-type transporter, periplasmic component
2540	 59.02	+1	2797821..2798513	+	230	19553828	-	NCgl2540	-	ABC-type transporter, ATPase component
2541	 60.77	+1	2798514..2799395	+	293	19553829	-	NCgl2541	-	ABC-type transporter, permease component
2542	 53.18	0	2799593..2801038	+	481	19553830	-	NCgl2542	-	transposase
2543	 50.98	0	2801114..2801317	+	67	23308958	-	NCgl2543	-	hypothetical protein
2544	 55.61	0	2801556..2803247	-	563	19553831	-	NCgl2544	-	hypothetical protein
2545	 58.27	+1	2803248..2803997	-	249	19553832	-	NCgl2545	-	hypothetical protein
2546	 56.36	0	2804072..2804692	-	206	19553833	-	NCgl2546	-	hypothetical protein
2547	 57.31	0	2804674..2805111	-	145	19553834	-	NCgl2547	-	hypothetical protein
2548	 54.66	0	2805111..2805968	-	285	19553835	-	NCgl2548	-	hypothetical protein
2549	 56.88	0	2806014..2806442	-	142	19553836	-	NCgl2549	-	hypothetical protein
2550	 52.82	0	2806597..2807253	-	218	23308959	-	NCgl2550	-	transcriptional regulator
2551	 57.43	0	2807424..2808365	-	313	19553838	-	NCgl2551	-	rRNA methylase
2552	 52.42	0	2808397..2809779	-	460	19553839	cysS	NCgl2552	-	cysteinyl-tRNA synthetase
2553	 53.68	0	2809822..2811807	-	661	19553840	-	NCgl2553	-	phosphotransferase system IIC component
2554	 54.76	0	2811958..2813259	-	433	23308960	-	NCgl2554	-	beta-fructosidase
2555	 52.36	0	2813277..2814038	-	253	19553842	-	NCgl2555	-	glucosamine-6-phosphate isomerase
2556	 53.59	0	2814079..2815233	-	384	23308961	-	NCgl2556	-	N-acetylglucosamine-6-phosphate deacetylase
2557	 56.66	0	2815459..2816397	+	312	19553844	-	NCgl2557	-	putative dihydrodipicolinate synthase
2558	 56.14	0	2816410..2817321	+	303	19553845	-	NCgl2558	-	transcriptional regulator
2559	 56.65	0	2817364..2818062	+	232	19553846	-	NCgl2559	-	N-acetylmannosamine-6-phosphate 2-epimerase
2560	 58.62	+1	2818348..2819565	-	405	19553847	-	NCgl2560	-	hypothetical protein
2561	 55.05	0	2819555..2820277	-	240	19553848	-	NCgl2561	-	transcriptional regulator
2562	 58.77	+1	2820576..2822195	+	539	19553849	-	NCgl2562	-	ABC-type transporter, periplasmic component
2563	 54.93	0	2822388..2823341	+	317	23308962	-	NCgl2563	-	ABC-type transporter, permease component
2564	 54.72	0	2824275..2825345	+	356	23308963	-	NCgl2564	-	ABC-type transporter, ATPase component
2565	 55.19	0	2825342..2826160	+	272	19553852	-	NCgl2565	-	ABC-type transporter, ATPase component
2566	 51.12	0	2826213..2826836	-	207	19553853	-	NCgl2566	-	putative threonine efflux protein
2567	 49.50	-1	2826908..2827408	+	166	19553854	-	NCgl2567	-	transcriptional regulator
54.31	MEAN

3.83	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.