IslandPathversion 1.0

IslandPath Analysis: Corynebacterium glutamicum ATCC 13032



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 54.31 STD DEV: 3.83
Corynebacterium glutamicum ATCC 13032, complete genome - 1..3309401
2993 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2412	 49.46	-1	2650442..2650906	+	154	19553698	-	NCgl2412	-	hypothetical protein
2413	 53.50	0	2650987..2651343	+	118	19553699	-	NCgl2413	-	hypothetical protein
2414	 56.68	0	2651418..2652038	-	206	19553700	-	NCgl2414	-	putative deoxyribonucleotide triphosphate pyrophosphatase
2415	 54.20	0	2652065..2652802	-	245	23308945	rph	NCgl2415	-	ribonuclease PH
2416	 51.17	0	2653007..2653219	-	70	19553702	-	NCgl2416	-	hypothetical protein
2417	 50.58	0	2653324..2654013	-	229	19553703	-	NCgl2417	-	hypothetical protein
2418	 58.25	+1	2654077..2654658	-	193	19553704	-	NCgl2418	-	putative transposase
2419	 64.48	+2	2654873..2656201	-	442	19553705	-	NCgl2419	-	hypothetical protein
2420	 58.29	+1	2656453..2656989	+	178	19553706	-	NCgl2420	-	putative transposase
2421	 50.83	0	2656972..2657634	-	220	19553707	-	NCgl2421	-	hypothetical protein
2422	 54.04	0	2657734..2658501	-	255	19553708	-	NCgl2422	-	metal-dependent hydrolase
2423	 51.81	0	2658604..2659458	-	284	19553709	-	NCgl2423	-	glutamate racemase
2424	 53.75	0	2659509..2660135	+	208	19553710	-	NCgl2424	-	hypothetical protein
2425	 53.13	0	2660145..2660639	-	164	19553711	-	NCgl2425	-	transcriptional regulator
2426	 51.33	0	2660669..2661418	-	249	19553712	-	NCgl2426	-	hypothetical protein
2427	 58.69	+1	2661415..2662329	-	304	19553713	-	NCgl2427	-	L-aminopeptidase/D-esterase
2428	 56.11	0	2662329..2662868	-	179	19553714	-	NCgl2428	-	hypothetical protein
2429	 52.27	0	2662881..2663255	-	124	19553715	clpS	NCgl2429	-	ATP-dependent Clp protease adaptor protein ClpS
2430	 51.81	0	2663513..2664064	+	183	19553716	-	NCgl2430	-	hypothetical protein
2431	 56.15	0	2664061..2665401	+	446	19553717	-	NCgl2431	-	nicotinate phosphoribosyltransferase
2432	 54.37	0	2665688..2665996	+	102	23308946	-	NCgl2432	-	hypothetical protein
2433	 57.11	0	2665861..2667858	+	665	19553718	-	NCgl2433	-	Rad3-related DNA helicase
2434	 53.69	0	2667868..2668761	-	297	19553719	-	NCgl2434	-	hypothetical protein
2435	 55.19	0	2668837..2669385	-	182	19553720	-	NCgl2435	-	hypothetical protein
2436	 55.76	0	2669555..2670856	-	433	19553721	-	NCgl2436	-	phosphoserine phosphatase
2437	 55.44	0	2671061..2672815	-	584	23308947	-	NCgl2437	-	heme/copper-type cytochrome/quinol oxidase, subunit 1
2438	 51.74	0	2673336..2674340	-	334	19553723	nrdF	NCgl2438	-	ribonucleotide-diphosphate reductase subunit beta
2439	 56.03	0	2674805..2675293	+	162	19553724	-	NCgl2439	-	ferritin-like protein
2440	 56.57	0	2675492..2676244	+	250	19553725	-	NCgl2440	-	transcriptional regulator
2441	 53.46	0	2676241..2676876	-	211	19553726	-	NCgl2441	-	Mn-dependent transcriptional regulator
2442	 52.33	0	2676916..2677194	-	92	19553727	-	NCgl2442	-	hypothetical protein
2443	 54.00	0	2677476..2679623	-	715	19553728	-	NCgl2443	-	ribonucleotide-diphosphate reductase subunit alpha
2444	 49.89	-1	2679682..2680128	-	148	19553729	nrdI	NCgl2444	-	ribonucleotide reductase stimulatory protein
2445	 57.26	0	2680417..2680650	-	77	19553730	-	NCgl2445	-	glutaredoxin-like protein
2446	 53.84	0	2681547..2682380	+	277	19553732	nadE	NCgl2446	-	NAD synthetase
2447	 59.73	+1	2682377..2683126	-	249	19553733	-	NCgl2447	-	hypothetical protein
2448	 52.90	0	2683129..2683542	-	137	19553734	-	NCgl2448	-	hypothetical protein
2449	 54.55	0	2683625..2684647	-	340	19553735	-	NCgl2449	-	putative Zn-NADPH:quinone dehydrogenase
2450	 52.98	0	2684920..2686293	+	457	19553736	-	NCgl2450	-	hypothetical protein
2451	 52.93	0	2686316..2687152	+	278	19553737	-	NCgl2451	-	hypothetical protein
2452	 54.59	0	2687447..2688241	-	264	19553738	-	NCgl2452	-	hypothetical protein
2453	 59.94	+1	2688387..2690051	-	554	19553739	-	NCgl2453	-	phosphoglucomutase
2454	 61.51	+1	2690151..2690441	+	96	19553740	ccrB	NCgl2454	-	camphor resistance protein CrcB
2455	 51.07	0	2690438..2690764	+	108	19553741	-	NCgl2455	-	hypothetical protein
2456	 58.24	+1	2690774..2691568	+	264	19553742	-	NCgl2456	-	hypothetical protein
2457	 59.14	+1	2691690..2693057	+	455	19553743	-	NCgl2457	-	hypothetical protein
2458	 49.91	-1	2693300..2694922	+	540	19553744	-	NCgl2458	-	hypothetical protein
2459	 41.74	-2	2694927..2695283	+	118	19553745	-	NCgl2459	-	hypothetical protein
2460	 50.00	-1	2695318..2695767	-	149	19553746	-	NCgl2460	-	transposase
2461	 60.20	+1	2695840..2697216	+	458	19553747	-	NCgl2461	-	hypothetical protein
2462	 50.32	-1	2697381..2698151	-	256	19553748	-	NCgl2462	-	hypothetical protein
2463	 54.64	0	2698192..2699580	-	462	19553749	-	NCgl2463	-	Na+/H+-dicarboxylate symporter
2464	 56.05	0	2699924..2702467	-	847	23308948	-	NCgl2464	-	ABC-type transporter, permease component
2465	 53.57	0	2702485..2703339	-	284	19553751	-	NCgl2465	-	ABC-type transporter, ATPase component
2466	 54.92	0	2709879..2710559	+	226	19553752	-	NCgl2466	-	hypothetical protein
2467	 53.19	0	2710638..2711312	+	224	19553753	-	NCgl2467	-	dehydrogenase
2468	 53.60	0	2711851..2712378	+	175	19553754	-	NCgl2468	-	hypothetical protein
2469	 44.95	-2	2717991..2718188	-	65	23308949	-	NCgl2469	-	hypothetical protein
2470	 53.78	0	2718434..2719690	-	418	19553755	-	NCgl2470	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
2471	 52.18	0	2719751..2720323	+	190	19553756	-	NCgl2471	-	hypothetical protein
2472	 57.45	0	2720383..2721228	-	281	19553757	-	NCgl2472	-	regulatory-like protein
2473	 58.20	+1	2721905..2722861	+	318	19553758	-	NCgl2473	-	cysteine synthase
2474	 57.01	0	2723065..2723613	+	182	19553759	-	NCgl2474	-	serine acetyltransferase
2475	 46.74	-1	2723768..2724058	-	96	19553760	-	NCgl2475	-	acetyltransferase
2476	 52.43	0	2724476..2725360	-	294	19553761	-	NCgl2476	-	succinyl-CoA synthetase subunit alpha
2477	 54.14	0	2725382..2726578	-	398	23308950	sucC	NCgl2477	-	succinyl-CoA synthetase subunit beta
2478	 55.42	0	2727397..2728134	-	245	19553763	-	NCgl2478	-	dithiol-disulfide isomerase
2479	 58.66	+1	2728205..2728891	-	228	19553764	-	NCgl2479	-	hypothetical protein
2480	 56.33	0	2729376..2730884	-	502	19553765	-	NCgl2480	-	acetyl-CoA hydrolase
2481	 56.98	0	2731377..2732522	+	381	23308951	-	NCgl2481	-	TIM-barrel containing enzyme
2482	 54.15	0	2732637..2733371	+	244	23308952	-	NCgl2482	-	phosphate uptake regulator
2483	 55.56	0	2733453..2734226	-	257	19553768	-	NCgl2483	-	ABC-type transporter, ATPase component
2484	 56.28	0	2734262..2735185	-	307	19553769	-	NCgl2484	-	ABC-type transporter, permease component
2485	 55.06	0	2735200..2736216	-	338	23308953	-	NCgl2485	-	ABC-type transporter, permease component
2486	 57.45	0	2736412..2737539	-	375	19553771	-	NCgl2486	-	ABC-type transporter, periplasmic component
2487	 52.79	0	2737834..2738712	-	292	19553772	-	NCgl2487	-	histone acetyltransferase HPA2-like protein
2488	 58.53	+1	2738796..2739557	+	253	19553773	-	NCgl2488	-	hypothetical protein
2489	 52.73	0	2739554..2740672	-	372	19553774	-	NCgl2489	-	hypothetical protein
2490	 59.86	+1	2740671..2741360	+	229	19553775	-	NCgl2490	-	hypothetical protein
2491	 55.87	0	2741634..2742578	-	314	23308954	-	NCgl2491	-	4-amino-4-deoxychorismate lyase
2492	 55.97	0	2742668..2743789	+	373	19553777	-	NCgl2492	-	aminomethyltransferase related to GcvT
2493	 56.48	0	2744011..2744226	+	71	19553778	-	NCgl2493	-	hypothetical protein
2494	 59.52	+1	2744879..2745955	-	358	19553779	-	NCgl2494	-	phosphoribosylaminoimidazole synthetase
2495	 57.24	0	2746081..2747628	-	515	19553780	-	NCgl2495	-	amidophosphoribosyltransferase
2496	 56.61	0	2747681..2748058	-	125	19553781	-	NCgl2496	-	hypothetical protein
2497	 55.59	0	2748096..2749115	+	339	19553782	-	NCgl2497	-	acyl-CoA hydrolase
2498	 55.56	0	2749160..2749924	-	254	19553783	-	NCgl2498	-	membrane proteins
2499	 58.76	+1	2750025..2752313	-	762	19553784	-	NCgl2499	-	phosphoribosylformylglycinamidine synthase II
2500	 56.99	0	2752325..2752996	-	223	19553785	-	NCgl2500	-	phosphoribosylformylglycinamidine synthase subunit I
2501	 55.28	0	2752993..2753238	-	81	19553786	-	NCgl2501	-	phosphoribosylformylglycinamidine synthase subunit PurS
2502	 51.25	0	2753326..2753805	-	159	19553787	-	NCgl2502	-	glutathione peroxidase
2503	 57.03	0	2753993..2756743	+	916	19553788	-	NCgl2503	-	extracellular nuclease
2504	 52.87	0	2756957..2757130	+	57	19553789	-	NCgl2504	-	hypothetical protein
2505	 54.64	0	2757127..2757816	-	229	19553790	-	NCgl2505	-	deacetylase
2506	 51.45	0	2757861..2759201	-	446	19553791	-	NCgl2506	-	Na+/H+-dicarboxylate symporter
2507	 55.16	0	2759530..2761650	-	706	19553792	-	NCgl2507	-	protease II
2508	 53.24	0	2761783..2762676	-	297	19553793	hemH	NCgl2508	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
2509	 58.00	0	2763502..2764932	-	476	19553796	-	NCgl2509	-	adenylosuccinate lyase
2510	 54.61	0	2764976..2766136	-	386	23308955	-	NCgl2510	-	PLP-dependent aminotransferase
2511	 56.64	0	2766156..2767421	-	421	19553798	-	NCgl2511	-	phosphoribosylamine--glycine ligase
54.31	MEAN

3.83	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.