IslandPathversion 1.0

IslandPath Analysis: Corynebacterium glutamicum ATCC 13032



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 54.31 STD DEV: 3.83
Corynebacterium glutamicum ATCC 13032, complete genome - 1..3309401
2993 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2357	 54.40	0	2587977..2588726	+	249	19553639	-	NCgl2357	-	uncharacterized membrane-associated protein
2358	 59.49	+1	2588723..2589433	-	236	19553640	-	NCgl2358	-	short chain dehydrogenase
2359	 53.98	0	2589566..2590306	+	246	23308939	-	NCgl2359	-	transcriptional regulator
2360	 57.62	0	2590310..2591470	-	386	19553642	-	NCgl2360	-	cystathionine gamma-synthase
2361	 57.61	0	2591572..2592366	-	264	23308940	-	NCgl2361	-	ABC-type transporter, ATPase component
2362	 55.81	0	2592403..2592798	+	131	19553644	-	NCgl2362	-	hemoglobin-like protein
2363	 62.60	+2	2592839..2593969	+	376	19553645	-	NCgl2363	-	chromate transport protein ChrA
2364	 60.00	+1	2593966..2594595	-	209	19553646	-	NCgl2364	-	hypothetical protein
2365	 54.91	0	2594595..2595062	-	155	19553647	-	NCgl2365	-	thioesterase
2366	 57.26	0	2595186..2595653	-	155	19553648	-	NCgl2366	-	hypothetical protein
2367	 50.30	-1	2595820..2595984	-	54	19553649	-	NCgl2367	-	hypothetical protein
2368	 56.79	0	2596046..2597716	-	556	19553650	-	NCgl2368	-	putative ABC transporter ATP-binding protein
2369	 53.40	0	2597867..2598484	-	205	19553651	-	NCgl2369	-	single-stranded DNA-binding protein
2370	 54.64	0	2598660..2600813	-	717	19553652	-	NCgl2370	-	hypothetical protein
2371	 55.77	0	2601462..2602883	+	473	23308941	-	NCgl2371	-	alkaline phosphatase
2372	 58.41	+1	2603943..2604584	-	213	19553655	-	NCgl2372	-	hypothetical protein
2373	 55.30	0	2604607..2605521	-	304	19553656	-	NCgl2373	-	ABC-type transporter, permease component
2374	 53.66	0	2605525..2606370	-	281	19553657	-	NCgl2374	-	ABC-type transporter, permease component
2375	 56.38	0	2606559..2607890	-	443	19553658	-	NCgl2375	-	ABC-type transporter, periplasmic component
2376	 58.23	+1	2608183..2609427	-	414	19553659	-	NCgl2376	-	hypothetical protein
2377	 60.48	+1	2609510..2610640	-	376	19553660	-	NCgl2377	-	ABC-type transporter, ATPase component
2378	 57.21	0	2610846..2611532	-	228	19553661	-	NCgl2378	-	glycosyltransferase
2379	 56.85	0	2611533..2612276	+	247	19553662	-	NCgl2379	-	hypothetical protein
2380	 50.35	-1	2613074..2613637	-	187	19553665	-	NCgl2380	-	AraC-type DNA-binding domain-containing protein
2381	 56.14	0	2613878..2614504	+	208	19553666	-	NCgl2381	-	hypothetical protein
2382	 55.63	0	2614536..2615414	+	292	19553667	-	NCgl2382	-	hypothetical protein
2383	 51.90	0	2615937..2617121	-	394	19553668	-	NCgl2383	-	hypothetical protein
2384	 51.26	0	2617247..2617999	+	250	23308942	-	NCgl2384	-	hydroxypyruvate isomerase
2385	 55.31	0	2618073..2618873	+	266	19553670	-	NCgl2385	-	short-chain dehydrogenase
2386	 55.45	0	2618883..2619542	+	219	19553671	-	NCgl2386	-	oligoribonuclease
2387	 60.62	+1	2619539..2620729	-	396	23308943	-	NCgl2387	-	hypothetical protein
2388	 53.38	0	2620971..2622182	-	403	19553673	-	NCgl2388	-	hypothetical protein
2389	 51.54	0	2622962..2623609	+	215	19553674	-	NCgl2389	-	hypothetical protein
2390	 48.37	-1	2623619..2623771	-	50	19553675	-	NCgl2390	-	hypothetical protein
2391	 43.37	-2	2623804..2624052	+	82	19553676	-	NCgl2391	-	hypothetical protein
2392	 51.95	0	2624049..2625359	-	436	19553677	-	NCgl2392	-	putative transposase
2393	 49.52	-1	2625601..2625810	+	69	19553678	-	NCgl2393	-	hypothetical protein
2394	 53.43	0	2625807..2626433	-	208	19553679	-	NCgl2394	-	hypothetical protein
2395	 58.29	+1	2626491..2627732	-	413	19553680	-	NCgl2395	-	glutaminase
2396	 57.89	0	2627925..2628380	+	151	19553681	-	NCgl2396	-	transcriptional regulator
2397	 55.16	0	2628440..2628856	+	138	19553682	-	NCgl2397	-	transcriptional regulator
2398	 54.91	0	2628927..2630483	+	518	161486711	-	NCgl2398	-	glucuronate isomerase
2399	 57.74	0	2630637..2631140	+	167	19553684	-	NCgl2399	-	gluconate kinase
2400	 57.84	0	2631304..2632470	+	388	19553685	-	NCgl2400	-	hypothetical protein
2401	 54.01	0	2632544..2633104	+	186	19553686	-	NCgl2401	-	amidase
2402	 57.97	0	2633144..2633419	-	91	19553687	-	NCgl2402	-	hypothetical protein
2403	 51.15	0	2633592..2634068	+	158	19553688	-	NCgl2403	-	bacterioferritin comigratory protein
2404	 53.99	0	2634117..2634755	+	212	23308944	-	NCgl2404	-	transcriptional regulator
2405	 60.05	+1	2634745..2635152	-	135	19553690	acpS	NCgl2405	-	4'-phosphopantetheinyl transferase
2406	 55.81	0	2635163..2636497	-	444	19553691	-	NCgl2406	-	major facilitator superfamily permease
2407	 44.44	-2	2636867..2637172	+	101	19553692	-	NCgl2407	-	hypothetical protein
2408	 53.24	0	2637238..2637654	-	138	19553693	-	NCgl2408	-	hypothetical protein
2409	 59.09	+1	2638647..2647637	-	2996	19553694	-	NCgl2409	-	3-oxoacyl-(acyl-carrier-protein) synthase
2410	 55.53	0	2648233..2649417	-	394	19553696	-	NCgl2410	-	regulator of polyketide synthase expression
2411	 61.11	+1	2649593..2650168	+	191	19553697	-	NCgl2411	-	metalloendopeptidase-like protein
2412	 49.46	-1	2650442..2650906	+	154	19553698	-	NCgl2412	-	hypothetical protein
2413	 53.50	0	2650987..2651343	+	118	19553699	-	NCgl2413	-	hypothetical protein
2414	 56.68	0	2651418..2652038	-	206	19553700	-	NCgl2414	-	putative deoxyribonucleotide triphosphate pyrophosphatase
2415	 54.20	0	2652065..2652802	-	245	23308945	rph	NCgl2415	-	ribonuclease PH
2416	 51.17	0	2653007..2653219	-	70	19553702	-	NCgl2416	-	hypothetical protein
2417	 50.58	0	2653324..2654013	-	229	19553703	-	NCgl2417	-	hypothetical protein
2418	 58.25	+1	2654077..2654658	-	193	19553704	-	NCgl2418	-	putative transposase
2419	 64.48	+2	2654873..2656201	-	442	19553705	-	NCgl2419	-	hypothetical protein
2420	 58.29	+1	2656453..2656989	+	178	19553706	-	NCgl2420	-	putative transposase
2421	 50.83	0	2656972..2657634	-	220	19553707	-	NCgl2421	-	hypothetical protein
2422	 54.04	0	2657734..2658501	-	255	19553708	-	NCgl2422	-	metal-dependent hydrolase
2423	 51.81	0	2658604..2659458	-	284	19553709	-	NCgl2423	-	glutamate racemase
2424	 53.75	0	2659509..2660135	+	208	19553710	-	NCgl2424	-	hypothetical protein
2425	 53.13	0	2660145..2660639	-	164	19553711	-	NCgl2425	-	transcriptional regulator
2426	 51.33	0	2660669..2661418	-	249	19553712	-	NCgl2426	-	hypothetical protein
2427	 58.69	+1	2661415..2662329	-	304	19553713	-	NCgl2427	-	L-aminopeptidase/D-esterase
2428	 56.11	0	2662329..2662868	-	179	19553714	-	NCgl2428	-	hypothetical protein
2429	 52.27	0	2662881..2663255	-	124	19553715	clpS	NCgl2429	-	ATP-dependent Clp protease adaptor protein ClpS
2430	 51.81	0	2663513..2664064	+	183	19553716	-	NCgl2430	-	hypothetical protein
2431	 56.15	0	2664061..2665401	+	446	19553717	-	NCgl2431	-	nicotinate phosphoribosyltransferase
2432	 54.37	0	2665688..2665996	+	102	23308946	-	NCgl2432	-	hypothetical protein
2433	 57.11	0	2665861..2667858	+	665	19553718	-	NCgl2433	-	Rad3-related DNA helicase
2434	 53.69	0	2667868..2668761	-	297	19553719	-	NCgl2434	-	hypothetical protein
2435	 55.19	0	2668837..2669385	-	182	19553720	-	NCgl2435	-	hypothetical protein
2436	 55.76	0	2669555..2670856	-	433	19553721	-	NCgl2436	-	phosphoserine phosphatase
2437	 55.44	0	2671061..2672815	-	584	23308947	-	NCgl2437	-	heme/copper-type cytochrome/quinol oxidase, subunit 1
2438	 51.74	0	2673336..2674340	-	334	19553723	nrdF	NCgl2438	-	ribonucleotide-diphosphate reductase subunit beta
2439	 56.03	0	2674805..2675293	+	162	19553724	-	NCgl2439	-	ferritin-like protein
2440	 56.57	0	2675492..2676244	+	250	19553725	-	NCgl2440	-	transcriptional regulator
2441	 53.46	0	2676241..2676876	-	211	19553726	-	NCgl2441	-	Mn-dependent transcriptional regulator
2442	 52.33	0	2676916..2677194	-	92	19553727	-	NCgl2442	-	hypothetical protein
2443	 54.00	0	2677476..2679623	-	715	19553728	-	NCgl2443	-	ribonucleotide-diphosphate reductase subunit alpha
2444	 49.89	-1	2679682..2680128	-	148	19553729	nrdI	NCgl2444	-	ribonucleotide reductase stimulatory protein
2445	 57.26	0	2680417..2680650	-	77	19553730	-	NCgl2445	-	glutaredoxin-like protein
2446	 53.84	0	2681547..2682380	+	277	19553732	nadE	NCgl2446	-	NAD synthetase
2447	 59.73	+1	2682377..2683126	-	249	19553733	-	NCgl2447	-	hypothetical protein
2448	 52.90	0	2683129..2683542	-	137	19553734	-	NCgl2448	-	hypothetical protein
2449	 54.55	0	2683625..2684647	-	340	19553735	-	NCgl2449	-	putative Zn-NADPH:quinone dehydrogenase
2450	 52.98	0	2684920..2686293	+	457	19553736	-	NCgl2450	-	hypothetical protein
2451	 52.93	0	2686316..2687152	+	278	19553737	-	NCgl2451	-	hypothetical protein
2452	 54.59	0	2687447..2688241	-	264	19553738	-	NCgl2452	-	hypothetical protein
2453	 59.94	+1	2688387..2690051	-	554	19553739	-	NCgl2453	-	phosphoglucomutase
2454	 61.51	+1	2690151..2690441	+	96	19553740	ccrB	NCgl2454	-	camphor resistance protein CrcB
2455	 51.07	0	2690438..2690764	+	108	19553741	-	NCgl2455	-	hypothetical protein
2456	 58.24	+1	2690774..2691568	+	264	19553742	-	NCgl2456	-	hypothetical protein
54.31	MEAN

3.83	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.