IslandPathversion 1.0

IslandPath Analysis: Corynebacterium glutamicum ATCC 13032



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 54.31 STD DEV: 3.83
Corynebacterium glutamicum ATCC 13032, complete genome - 1..3309401
2993 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2239	 53.04	0	2459372..2460340	+	322	19553519	-	NCgl2239	-	ABC-type transporter, permease component
2240	 55.84	0	2460341..2461171	+	276	19553520	-	NCgl2240	-	ABC-type transporter, permease component
2241	 55.56	0	2461164..2462603	+	479	19553521	-	NCgl2241	-	ABC-type transporter, duplicated ATPase component
2242	 52.90	0	2462600..2463151	-	183	19553522	-	NCgl2242	-	2'-5' RNA ligase
2243	 57.28	0	2463242..2464147	+	301	19553523	-	NCgl2243	-	sugar kinase
2244	 54.76	0	2464345..2465772	+	475	19553525	-	NCgl2244	-	uncharacterized iron-regulated membrane protein
2245	 52.82	0	2466036..2467010	-	324	19553526	-	NCgl2245	-	Na+-dependent transporter
2246	 52.89	0	2467078..2467926	+	282	23308927	-	NCgl2246	-	hypothetical protein
2247	 55.77	0	2467923..2470142	-	739	19553528	-	NCgl2247	-	malate synthase G
2248	 58.12	0	2470741..2472039	+	432	19553529	-	NCgl2248	-	isocitrate lyase
2249	 56.54	0	2472251..2472823	+	190	19553530	-	NCgl2249	-	thiamine biosynthesis protein x
2250	 53.09	0	2472891..2473553	-	220	19553531	-	NCgl2250	-	hypothetical protein
2251	 53.30	0	2473654..2475546	+	630	19553532	-	NCgl2251	-	choline-glycine betaine transporter
2252	 53.90	0	2475838..2476119	-	93	19553533	-	NCgl2252	-	hypothetical protein
2253	 54.45	0	2476498..2477496	+	332	19553534	-	NCgl2253	-	hypothetical protein
2254	 53.64	0	2477651..2479255	+	534	19553535	-	NCgl2254	-	hypothetical protein
2255	 56.59	0	2479380..2479766	+	128	19553536	-	NCgl2255	-	hypothetical protein
2256	 52.89	0	2479896..2481209	-	437	19553537	-	NCgl2256	-	integral membrane protein
2257	 52.11	0	2481211..2481732	-	173	19553538	-	NCgl2257	-	hypothetical protein
2258	 52.67	0	2481732..2482481	-	249	23308928	-	NCgl2258	-	dicarboxylate-binding periplasmic protein
2259	 53.63	0	2482546..2484393	-	615	19553540	-	NCgl2259	-	GTP-binding protein LepA
2260	 55.39	0	2484662..2485273	+	203	19553541	-	NCgl2260	-	hypothetical protein
2261	 54.17	0	2485474..2485737	+	87	19553542	rpsT	NCgl2261	-	30S ribosomal protein S20
2262	 57.89	0	2485799..2486470	-	223	19553543	-	NCgl2262	-	putative threonine efflux protein
2263	 53.92	0	2486475..2486882	-	135	23308929	-	NCgl2263	-	ankyrin repeat-containing protein
2264	 54.32	0	2486908..2487903	-	331	19553545	-	NCgl2264	-	hypothetical protein
2265	 53.09	0	2487910..2489574	-	554	19553546	-	NCgl2265	-	competence protein ComE-like protein
2266	 56.57	0	2489571..2490224	-	217	19553547	-	NCgl2266	-	DNA uptake protein
2267	 56.24	0	2490288..2491112	-	274	19553548	-	NCgl2267	-	hypothetical protein
2268	 56.68	0	2491149..2491859	-	236	19553549	-	NCgl2268	-	fructose-2,6-bisphosphatase
2269	 52.95	0	2491871..2492344	-	157	19553550	-	NCgl2269	-	hypothetical protein
2270	 52.66	0	2492499..2493155	-	218	19553551	nadD	NCgl2270	-	nicotinic acid mononucleotide adenylyltransferase
2271	 51.07	0	2493213..2494238	-	341	19553552	-	NCgl2271	-	hypothetical protein
2272	 57.66	0	2494337..2495635	-	432	19553553	proA	NCgl2272	-	gamma-glutamyl phosphate reductase
2273	 53.99	0	2495694..2496608	-	304	19553554	-	NCgl2273	-	putative phosphoglycerate dehydrogenase
2274	 56.31	0	2496668..2497777	-	369	23308930	-	NCgl2274	-	gamma-glutamyl kinase
2275	 56.24	0	2498007..2499512	-	501	19553556	obgE	NCgl2275	-	GTPase ObgE
2276	 56.57	0	2499694..2501673	+	659	19553557	-	NCgl2276	-	xanthine/uracil permease
2277	 51.65	0	2501733..2502578	-	281	23308931	-	NCgl2277	-	aldo/keto reductase
2278	 52.88	0	2502736..2503359	+	207	19553559	-	NCgl2278	-	hypothetical protein
2279	 58.05	0	2503982..2504248	-	88	19553561	rpmA	NCgl2279	-	50S ribosomal protein L27
2280	 57.19	0	2504298..2504603	-	101	19553562	rplU	NCgl2280	-	50S ribosomal protein L21
2281	 56.98	0	2504829..2507894	-	1021	19553563	-	NCgl2281	-	ribonuclease E
2282	 51.63	0	2508107..2508844	+	245	19553564	-	NCgl2282	-	hypothetical protein
2283	 55.56	0	2508923..2509534	+	203	19553565	-	NCgl2283	-	pirin-related protein
2284	 51.79	0	2509521..2510831	-	436	19553566	-	NCgl2284	-	transposase
2285	 54.07	0	2511047..2511427	+	126	19553567	-	NCgl2285	-	pirin-related protein
2286	 53.42	0	2511428..2511880	+	150	19553568	-	NCgl2286	-	hypothetical protein
2287	 55.96	0	2511947..2512357	-	136	19553569	ndk	NCgl2287	-	nucleoside diphosphate kinase
2288	 52.96	0	2512407..2512727	-	106	19553570	-	NCgl2288	-	hypothetical protein
2289	 45.51	-2	2512804..2513148	+	114	19553571	-	NCgl2289	-	acetyltransferase
2290	 49.36	-1	2513152..2513619	-	155	19553572	-	NCgl2290	-	hypothetical protein
2291	 52.11	0	2513690..2514115	-	141	19553573	-	NCgl2291	-	hypothetical protein
2292	 58.02	0	2514112..2515488	-	458	23308932	-	NCgl2292	-	folylpolyglutamate synthase
2293	 57.12	0	2515635..2518346	-	903	19553575	valS	NCgl2293	-	valyl-tRNA synthetase
2294	 53.23	0	2518396..2519973	-	525	19553576	-	NCgl2294	-	ABC-type transport systems, periplasmic components
2295	 56.56	0	2520210..2521664	+	484	19553577	-	NCgl2295	-	molecular chaperone
2296	 55.44	0	2521665..2522252	-	195	19553578	-	NCgl2296	-	Rossmann fold nucleotide-binding protein
2297	 55.72	0	2522263..2523249	-	328	19553579	-	NCgl2297	-	malate dehydrogenase
2298	 50.38	-1	2523562..2524341	+	259	19553580	-	NCgl2298	-	transcriptional regulator
2299	 51.64	0	2524338..2524916	-	192	23308933	-	NCgl2299	-	transcriptional regulator
2300	 55.79	0	2525100..2526230	+	376	19553582	-	NCgl2300	-	ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenase
2301	 52.25	0	2526234..2527211	+	325	19553583	-	NCgl2301	-	flavodoxin reductase family protein 1
2302	 56.45	0	2527223..2528563	+	446	19553584	-	NCgl2302	-	major facilitator superfamily permease
2303	 55.31	0	2528549..2529481	-	310	19553585	-	NCgl2303	-	permease
2304	 52.77	0	2529482..2530762	-	426	19553586	clpX	NCgl2304	-	ATP-dependent protease ATP-binding subunit
2305	 54.82	0	2530892..2531980	+	362	23308934	-	NCgl2305	-	hypothetical protein
2306	 55.97	0	2531967..2532602	-	211	19553588	-	NCgl2306	-	acyl-CoA:acetate CoA transferase beta subunit
2307	 58.03	0	2532602..2533354	-	250	19553589	-	NCgl2307	-	acyl-CoA:acetate CoA transferase alpha subunit
2308	 57.03	0	2533419..2534186	+	255	19553590	-	NCgl2308	-	transcriptional regulator
2309	 60.31	+1	2534202..2535428	+	408	19553591	-	NCgl2309	-	acetyl-CoA acetyltransferase
2310	 59.13	+1	2535431..2536186	+	251	19553592	-	NCgl2310	-	hydrolase/acyltransferase
2311	 60.22	+1	2536197..2538260	+	687	19553593	-	NCgl2311	-	DNA-binding HTH domain-containing protein
2312	 56.91	0	2538246..2538614	-	122	19553594	-	NCgl2312	-	hypothetical protein
2313	 60.14	+1	2538614..2539732	-	372	23308935	-	NCgl2313	-	putative 3-carboxy-cis,cis-muconate cycloisomerase
2314	 56.59	0	2539707..2540321	-	204	19553596	-	NCgl2314	-	protocatechuate 3,4-dioxygenase beta subunit
2315	 58.30	+1	2540333..2541025	-	230	19553597	-	NCgl2315	-	protocatechuate 3,4-dioxygenase beta subunit
2316	 55.78	0	2541185..2542351	-	388	19553598	-	NCgl2316	-	hypothetical protein
2317	 49.32	-1	2542510..2542803	-	97	19553599	-	NCgl2317	-	hypothetical protein
2318	 58.11	0	2542816..2543937	-	373	23308936	-	NCgl2318	-	putative chloromuconate cycloisomerase
2319	 56.29	0	2544020..2544877	-	285	19553601	-	NCgl2319	-	protocatechuate 3,4-dioxygenase beta subunit
2320	 57.56	0	2545295..2546788	+	497	19553602	-	NCgl2320	-	benzoate dioxygenase large subunit
2321	 53.13	0	2546828..2547322	+	164	19553603	-	NCgl2321	-	benzoate dioxygenase small subunit
2322	 57.18	0	2547334..2548872	+	512	19553604	-	NCgl2322	-	benzoate 1,2-dioxygenase ferredoxin reductase subunit
2323	 56.44	0	2548869..2549699	+	276	19553605	benD	NCgl2323	-	1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase
2324	 56.25	0	2549838..2552459	+	873	19553606	-	NCgl2324	-	DNA-binding HTH domain-containing protein
2325	 59.28	+1	2552606..2553946	+	446	19553607	-	NCgl2325	-	putative benzoate transporter
2326	 56.22	0	2554027..2555271	+	414	19553608	-	NCgl2326	-	putative benzoate membrane transport protein
2327	 57.10	0	2555315..2555941	-	208	19553609	-	NCgl2327	-	ATP-dependent Clp protease proteolytic subunit
2328	 55.39	0	2555976..2556569	-	197	19553610	clpP	NCgl2328	-	ATP-dependent Clp protease proteolytic subunit
2329	 55.85	0	2556758..2558107	-	449	19553611	tig	NCgl2329	-	trigger factor
2330	 51.81	0	2558610..2559107	+	165	19553612	-	NCgl2330	-	hypothetical protein
2331	 51.02	0	2559107..2560135	+	342	19553613	-	NCgl2331	-	beta-lactamase class C
2332	 47.28	-1	2560132..2560590	+	152	19553614	-	NCgl2332	-	hypothetical protein
2333	 51.19	0	2561116..2561367	+	83	19553615	-	NCgl2333	-	hypothetical protein
2334	 52.83	0	2561481..2561921	-	146	19553616	-	NCgl2334	-	hypothetical protein
2335	 56.93	0	2562076..2562342	-	88	23308937	-	NCgl2335	-	hypothetical protein
2336	 55.41	0	2562964..2563851	+	295	19553618	-	NCgl2336	-	hypothetical protein
2337	 57.17	0	2563930..2564403	-	157	19553619	-	NCgl2337	-	ribose-5-phosphate isomerase B
2338	 54.79	0	2564548..2565246	-	232	19553620	-	NCgl2338	-	hypothetical protein
54.31	MEAN

3.83	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.