IslandPathversion 1.0

IslandPath Analysis: Corynebacterium glutamicum ATCC 13032



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 54.31 STD DEV: 3.83
Corynebacterium glutamicum ATCC 13032, complete genome - 1..3309401
2993 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2204	 58.71	+1	2417220..2417948	-	242	19553482	recO	NCgl2204	-	DNA repair protein RecO
2205	 57.73	0	2417967..2418884	-	305	19553483	era	NCgl2205	-	GTP-binding protein Era
2206	 55.63	0	2418988..2420310	-	440	19553484	-	NCgl2206	-	CBS domain-containing protein
2207	 58.88	+1	2420311..2420901	-	196	19553485	-	NCgl2207	-	putative metalloprotease
2208	 56.03	0	2420898..2421950	-	350	23308922	-	NCgl2208	-	phosphate starvation-inducible protein PhoH
2209	 60.33	+1	2421973..2422698	-	241	19553487	-	NCgl2209	-	hypothetical protein
2210	 58.31	+1	2422698..2423846	-	382	19553488	-	NCgl2210	-	molecular chaperone
2211	 57.21	0	2423913..2424938	-	341	23308923	hrcA	NCgl2211	-	heat-inducible transcription repressor
2212	 58.97	+1	2424963..2426105	-	380	161486712	-	NCgl2212	-	coproporphyrinogen III oxidase
2213	 52.83	0	2426191..2426703	+	170	19553491	-	NCgl2213	-	hypothetical protein
2214	 59.77	+1	2426774..2427454	-	226	19553492	-	NCgl2214	-	hypothetical protein
2215	 54.59	0	2427805..2428185	-	126	19553493	-	NCgl2215	-	hypothetical protein
2216	 54.55	0	2428182..2430029	-	615	19553494	-	NCgl2216	-	long-chain acyl-CoA synthetase (AMP-forming)
2217	 54.55	0	2430297..2432417	+	706	19553495	-	NCgl2217	-	4-alpha-glucanotransferase
2218	 55.20	0	2432509..2434374	+	621	19553496	-	NCgl2218	-	ABC-type transporter, ATPase component and permease component
2219	 59.65	+1	2434803..2436839	-	678	19553498	-	NCgl2219	-	Zn-dependent oligopeptidase
2220	 60.32	+1	2436872..2438053	+	393	19553499	-	NCgl2220	-	carboxylesterase type B
2221	 54.26	0	2438114..2439910	+	598	23308924	-	NCgl2221	-	putative trehalose synthase
2222	 53.75	0	2439907..2440998	+	363	19553501	-	NCgl2222	-	hypothetical protein
2223	 54.59	0	2441003..2441590	-	195	23308925	-	NCgl2223	-	isopentenyl-diphosphate delta-isomerase
2224	 57.34	0	2441600..2443357	-	585	19553503	-	NCgl2224	-	hypothetical protein
2225	 50.09	-1	2443354..2443920	-	188	19553504	-	NCgl2225	-	hypothetical protein
2226	 53.26	0	2444031..2444552	-	173	19553505	-	NCgl2226	-	hypothetical protein
2227	 51.76	0	2444607..2445713	+	368	19553506	-	NCgl2227	-	PLP-dependent aminotransferase
2228	 52.46	0	2445717..2446997	+	426	19553507	-	NCgl2228	-	branched-chain amino acid permease
2229	 53.11	0	2447022..2448002	+	326	19553508	-	NCgl2229	-	coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase
2230	 48.38	-1	2448326..2450173	-	615	19553509	-	NCgl2230	-	EctP protein
2231	 49.71	-1	2450321..2450839	-	172	19553510	-	NCgl2231	-	hypothetical protein
2232	 51.83	0	2450857..2451786	-	309	19553511	-	NCgl2232	-	permease
2233	 54.30	0	2451792..2454638	-	948	19553512	-	NCgl2233	-	FAD/FMN-containing dehydrogenase
2234	 53.92	0	2454726..2455439	+	237	23308926	-	NCgl2234	-	transcriptional regulator
2235	 48.45	-1	2455450..2455707	-	85	19553515	-	NCgl2235	-	hypothetical protein
2236	 49.41	-1	2455718..2457067	-	449	19553516	-	NCgl2236	-	hypothetical protein
2237	 60.80	+1	2457335..2457760	-	141	19553517	-	NCgl2237	-	hypothetical protein
2238	 56.35	0	2457864..2459375	+	503	19553518	-	NCgl2238	-	ABC-type transporter, periplasmic component
2239	 53.04	0	2459372..2460340	+	322	19553519	-	NCgl2239	-	ABC-type transporter, permease component
2240	 55.84	0	2460341..2461171	+	276	19553520	-	NCgl2240	-	ABC-type transporter, permease component
2241	 55.56	0	2461164..2462603	+	479	19553521	-	NCgl2241	-	ABC-type transporter, duplicated ATPase component
2242	 52.90	0	2462600..2463151	-	183	19553522	-	NCgl2242	-	2'-5' RNA ligase
2243	 57.28	0	2463242..2464147	+	301	19553523	-	NCgl2243	-	sugar kinase
2244	 54.76	0	2464345..2465772	+	475	19553525	-	NCgl2244	-	uncharacterized iron-regulated membrane protein
2245	 52.82	0	2466036..2467010	-	324	19553526	-	NCgl2245	-	Na+-dependent transporter
2246	 52.89	0	2467078..2467926	+	282	23308927	-	NCgl2246	-	hypothetical protein
2247	 55.77	0	2467923..2470142	-	739	19553528	-	NCgl2247	-	malate synthase G
2248	 58.12	0	2470741..2472039	+	432	19553529	-	NCgl2248	-	isocitrate lyase
2249	 56.54	0	2472251..2472823	+	190	19553530	-	NCgl2249	-	thiamine biosynthesis protein x
2250	 53.09	0	2472891..2473553	-	220	19553531	-	NCgl2250	-	hypothetical protein
2251	 53.30	0	2473654..2475546	+	630	19553532	-	NCgl2251	-	choline-glycine betaine transporter
2252	 53.90	0	2475838..2476119	-	93	19553533	-	NCgl2252	-	hypothetical protein
2253	 54.45	0	2476498..2477496	+	332	19553534	-	NCgl2253	-	hypothetical protein
2254	 53.64	0	2477651..2479255	+	534	19553535	-	NCgl2254	-	hypothetical protein
2255	 56.59	0	2479380..2479766	+	128	19553536	-	NCgl2255	-	hypothetical protein
2256	 52.89	0	2479896..2481209	-	437	19553537	-	NCgl2256	-	integral membrane protein
2257	 52.11	0	2481211..2481732	-	173	19553538	-	NCgl2257	-	hypothetical protein
2258	 52.67	0	2481732..2482481	-	249	23308928	-	NCgl2258	-	dicarboxylate-binding periplasmic protein
2259	 53.63	0	2482546..2484393	-	615	19553540	-	NCgl2259	-	GTP-binding protein LepA
2260	 55.39	0	2484662..2485273	+	203	19553541	-	NCgl2260	-	hypothetical protein
2261	 54.17	0	2485474..2485737	+	87	19553542	rpsT	NCgl2261	-	30S ribosomal protein S20
2262	 57.89	0	2485799..2486470	-	223	19553543	-	NCgl2262	-	putative threonine efflux protein
2263	 53.92	0	2486475..2486882	-	135	23308929	-	NCgl2263	-	ankyrin repeat-containing protein
2264	 54.32	0	2486908..2487903	-	331	19553545	-	NCgl2264	-	hypothetical protein
2265	 53.09	0	2487910..2489574	-	554	19553546	-	NCgl2265	-	competence protein ComE-like protein
2266	 56.57	0	2489571..2490224	-	217	19553547	-	NCgl2266	-	DNA uptake protein
2267	 56.24	0	2490288..2491112	-	274	19553548	-	NCgl2267	-	hypothetical protein
2268	 56.68	0	2491149..2491859	-	236	19553549	-	NCgl2268	-	fructose-2,6-bisphosphatase
2269	 52.95	0	2491871..2492344	-	157	19553550	-	NCgl2269	-	hypothetical protein
2270	 52.66	0	2492499..2493155	-	218	19553551	nadD	NCgl2270	-	nicotinic acid mononucleotide adenylyltransferase
2271	 51.07	0	2493213..2494238	-	341	19553552	-	NCgl2271	-	hypothetical protein
2272	 57.66	0	2494337..2495635	-	432	19553553	proA	NCgl2272	-	gamma-glutamyl phosphate reductase
2273	 53.99	0	2495694..2496608	-	304	19553554	-	NCgl2273	-	putative phosphoglycerate dehydrogenase
2274	 56.31	0	2496668..2497777	-	369	23308930	-	NCgl2274	-	gamma-glutamyl kinase
2275	 56.24	0	2498007..2499512	-	501	19553556	obgE	NCgl2275	-	GTPase ObgE
2276	 56.57	0	2499694..2501673	+	659	19553557	-	NCgl2276	-	xanthine/uracil permease
2277	 51.65	0	2501733..2502578	-	281	23308931	-	NCgl2277	-	aldo/keto reductase
2278	 52.88	0	2502736..2503359	+	207	19553559	-	NCgl2278	-	hypothetical protein
2279	 58.05	0	2503982..2504248	-	88	19553561	rpmA	NCgl2279	-	50S ribosomal protein L27
2280	 57.19	0	2504298..2504603	-	101	19553562	rplU	NCgl2280	-	50S ribosomal protein L21
2281	 56.98	0	2504829..2507894	-	1021	19553563	-	NCgl2281	-	ribonuclease E
2282	 51.63	0	2508107..2508844	+	245	19553564	-	NCgl2282	-	hypothetical protein
2283	 55.56	0	2508923..2509534	+	203	19553565	-	NCgl2283	-	pirin-related protein
2284	 51.79	0	2509521..2510831	-	436	19553566	-	NCgl2284	-	transposase
2285	 54.07	0	2511047..2511427	+	126	19553567	-	NCgl2285	-	pirin-related protein
2286	 53.42	0	2511428..2511880	+	150	19553568	-	NCgl2286	-	hypothetical protein
2287	 55.96	0	2511947..2512357	-	136	19553569	ndk	NCgl2287	-	nucleoside diphosphate kinase
2288	 52.96	0	2512407..2512727	-	106	19553570	-	NCgl2288	-	hypothetical protein
2289	 45.51	-2	2512804..2513148	+	114	19553571	-	NCgl2289	-	acetyltransferase
2290	 49.36	-1	2513152..2513619	-	155	19553572	-	NCgl2290	-	hypothetical protein
2291	 52.11	0	2513690..2514115	-	141	19553573	-	NCgl2291	-	hypothetical protein
2292	 58.02	0	2514112..2515488	-	458	23308932	-	NCgl2292	-	folylpolyglutamate synthase
2293	 57.12	0	2515635..2518346	-	903	19553575	valS	NCgl2293	-	valyl-tRNA synthetase
2294	 53.23	0	2518396..2519973	-	525	19553576	-	NCgl2294	-	ABC-type transport systems, periplasmic components
2295	 56.56	0	2520210..2521664	+	484	19553577	-	NCgl2295	-	molecular chaperone
2296	 55.44	0	2521665..2522252	-	195	19553578	-	NCgl2296	-	Rossmann fold nucleotide-binding protein
2297	 55.72	0	2522263..2523249	-	328	19553579	-	NCgl2297	-	malate dehydrogenase
2298	 50.38	-1	2523562..2524341	+	259	19553580	-	NCgl2298	-	transcriptional regulator
2299	 51.64	0	2524338..2524916	-	192	23308933	-	NCgl2299	-	transcriptional regulator
2300	 55.79	0	2525100..2526230	+	376	19553582	-	NCgl2300	-	ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenase
2301	 52.25	0	2526234..2527211	+	325	19553583	-	NCgl2301	-	flavodoxin reductase family protein 1
2302	 56.45	0	2527223..2528563	+	446	19553584	-	NCgl2302	-	major facilitator superfamily permease
2303	 55.31	0	2528549..2529481	-	310	19553585	-	NCgl2303	-	permease
54.31	MEAN

3.83	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.