IslandPathversion 1.0

IslandPath Analysis: Corynebacterium glutamicum ATCC 13032



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 54.31 STD DEV: 3.83
Corynebacterium glutamicum ATCC 13032, complete genome - 1..3309401
2993 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2153	 54.62	0	2369114..2370541	-	475	19553435	-	NCgl2153	-	exoribonuclease
2154	 49.49	-1	2370424..2370912	+	162	23308913	-	NCgl2154	-	hypothetical protein
2155	 54.40	0	2371410..2372558	-	382	19553436	-	NCgl2155	-	bifunctional RNase H/acid phosphatase
2156	 58.89	+1	2372571..2373290	-	239	19553437	-	NCgl2156	-	Zn-ribbon protein
2157	 56.87	0	2373321..2374463	-	380	19553438	-	NCgl2157	-	hypothetical protein
2158	 52.36	0	2374545..2375201	+	218	19553439	-	NCgl2158	-	phosphatase
2159	 56.54	0	2375215..2375688	+	157	19553440	-	NCgl2159	-	protein-tyrosine-phosphatase
2160	 55.80	0	2375768..2376724	+	318	23308914	-	NCgl2160	-	hypothetical protein
2161	 55.56	0	2376996..2377391	-	131	23308915	-	NCgl2161	-	hypothetical protein
2162	 55.28	0	2377482..2377727	-	81	23308916	-	NCgl2162	-	hypothetical protein
2163	 50.68	0	2377768..2378280	+	170	19553442	-	NCgl2163	-	transcriptional regulator
2164	 51.57	0	2378335..2378493	+	52	19553443	-	NCgl2164	-	hypothetical protein
2165	 54.40	0	2378882..2379313	-	143	19553444	-	NCgl2165	-	hypothetical protein
2166	 40.52	-2	2379427..2379774	+	115	23308917	-	NCgl2166	-	hypothetical protein
2167	 56.09	0	2379980..2382748	+	922	19553445	aceE	NCgl2167	-	pyruvate dehydrogenase subunit E1
2168	 54.29	0	2382825..2383616	-	263	19553446	-	NCgl2168	-	ABC-type transporter, ATPase component
2169	 56.34	0	2383620..2384510	-	296	19553447	-	NCgl2169	-	ABC-type transporter, permease component
2170	 54.08	0	2384507..2385499	-	330	19553448	-	NCgl2170	-	hypothetical protein
2171	 61.35	+1	2385911..2386192	-	93	19553449	-	NCgl2171	-	hypothetical protein
2172	 51.20	0	2386210..2386584	+	124	19553450	-	NCgl2172	-	hypothetical protein
2173	 56.15	0	2386612..2387628	-	338	23308918	-	NCgl2173	-	hydrolase/acyltransferase
2174	 48.30	-1	2387668..2387961	+	97	19553452	-	NCgl2174	-	acyl carrier protein
2175	 53.50	0	2387998..2388825	+	275	19553453	-	NCgl2175	-	HAD family sugar phosphatase
2176	 58.55	+1	2388839..2389873	+	344	19553454	-	NCgl2176	-	hypothetical protein
2177	 54.08	0	2390432..2390860	-	142	19553455	-	NCgl2177	-	hypothetical protein
2178	 53.86	0	2391182..2392009	-	275	23308919	-	NCgl2178	-	beta-lactamase class C
2179	 55.12	0	2392073..2392531	-	152	19553457	-	NCgl2179	-	hypothetical protein
2180	 58.51	+1	2392577..2393140	-	187	19553458	-	NCgl2180	-	hypothetical protein
2181	 43.62	-2	2393165..2393407	+	80	19553459	-	NCgl2181	-	hypothetical protein
2182	 51.28	0	2393429..2393974	+	181	19553460	-	NCgl2182	-	hypothetical protein
2183	 50.58	0	2393971..2394399	-	142	19553461	-	NCgl2183	-	hypothetical protein
2184	 53.33	0	2394595..2394939	+	114	19553462	-	NCgl2184	-	hypothetical protein
2185	 57.58	0	2395217..2396767	+	516	19553463	-	NCgl2185	-	phosphodiesterase/alkaline phosphatase D
2186	 58.13	0	2397265..2399103	+	612	19553464	-	NCgl2186	-	hypothetical protein
2187	 55.56	0	2399159..2399401	+	80	19553465	-	NCgl2187	-	hypothetical protein
2188	 54.78	0	2399403..2401304	-	633	19553466	dnaG	NCgl2188	-	DNA primase
2189	 52.26	0	2401374..2401838	+	154	19553467	-	NCgl2189	-	hypothetical protein
2190	 53.66	0	2401839..2402084	+	81	19553468	-	NCgl2190	-	hypothetical protein
2191	 53.58	0	2402142..2404013	-	623	23308920	-	NCgl2191	-	D-fructose-6-phosphate amidotransferase
2192	 44.04	-2	2404524..2404850	+	108	19553470	-	NCgl2192	-	hypothetical protein
2193	 54.35	0	2404985..2406259	-	424	19553471	-	NCgl2193	-	deoxyguanosinetriphosphate triphosphohydrolase-like protein
2194	 52.95	0	2406260..2406937	-	225	23308921	-	NCgl2194	-	hypothetical protein
2195	 57.03	0	2406979..2409033	+	684	19553473	-	NCgl2195	-	chromosome segregation ATPase
2196	 58.49	+1	2409777..2410265	-	162	19553474	-	NCgl2196	-	hypothetical protein
2197	 47.01	-1	2410278..2410862	-	194	19553475	-	NCgl2197	-	hypothetical protein
2198	 54.11	0	2410954..2412339	-	461	19553476	-	NCgl2198	-	glycyl-tRNA synthetase
2199	 49.46	-1	2412581..2412952	+	123	19553477	-	NCgl2199	-	transcriptional regulator
2200	 53.33	0	2412993..2413427	+	144	19553478	-	NCgl2200	-	Fe2+/Zn2+ uptake regulation protein
2201	 58.30	+1	2413569..2415122	+	517	19553479	-	NCgl2201	-	hypothetical protein
2202	 62.85	+2	2415296..2416369	-	357	19553480	-	NCgl2202	-	hypothetical protein
2203	 55.46	0	2416369..2417100	-	243	19553481	-	NCgl2203	-	undecaprenyl pyrophosphate synthase
2204	 58.71	+1	2417220..2417948	-	242	19553482	recO	NCgl2204	-	DNA repair protein RecO
2205	 57.73	0	2417967..2418884	-	305	19553483	era	NCgl2205	-	GTP-binding protein Era
2206	 55.63	0	2418988..2420310	-	440	19553484	-	NCgl2206	-	CBS domain-containing protein
2207	 58.88	+1	2420311..2420901	-	196	19553485	-	NCgl2207	-	putative metalloprotease
2208	 56.03	0	2420898..2421950	-	350	23308922	-	NCgl2208	-	phosphate starvation-inducible protein PhoH
2209	 60.33	+1	2421973..2422698	-	241	19553487	-	NCgl2209	-	hypothetical protein
2210	 58.31	+1	2422698..2423846	-	382	19553488	-	NCgl2210	-	molecular chaperone
2211	 57.21	0	2423913..2424938	-	341	23308923	hrcA	NCgl2211	-	heat-inducible transcription repressor
2212	 58.97	+1	2424963..2426105	-	380	161486712	-	NCgl2212	-	coproporphyrinogen III oxidase
2213	 52.83	0	2426191..2426703	+	170	19553491	-	NCgl2213	-	hypothetical protein
2214	 59.77	+1	2426774..2427454	-	226	19553492	-	NCgl2214	-	hypothetical protein
2215	 54.59	0	2427805..2428185	-	126	19553493	-	NCgl2215	-	hypothetical protein
2216	 54.55	0	2428182..2430029	-	615	19553494	-	NCgl2216	-	long-chain acyl-CoA synthetase (AMP-forming)
2217	 54.55	0	2430297..2432417	+	706	19553495	-	NCgl2217	-	4-alpha-glucanotransferase
2218	 55.20	0	2432509..2434374	+	621	19553496	-	NCgl2218	-	ABC-type transporter, ATPase component and permease component
2219	 59.65	+1	2434803..2436839	-	678	19553498	-	NCgl2219	-	Zn-dependent oligopeptidase
2220	 60.32	+1	2436872..2438053	+	393	19553499	-	NCgl2220	-	carboxylesterase type B
2221	 54.26	0	2438114..2439910	+	598	23308924	-	NCgl2221	-	putative trehalose synthase
2222	 53.75	0	2439907..2440998	+	363	19553501	-	NCgl2222	-	hypothetical protein
2223	 54.59	0	2441003..2441590	-	195	23308925	-	NCgl2223	-	isopentenyl-diphosphate delta-isomerase
2224	 57.34	0	2441600..2443357	-	585	19553503	-	NCgl2224	-	hypothetical protein
2225	 50.09	-1	2443354..2443920	-	188	19553504	-	NCgl2225	-	hypothetical protein
2226	 53.26	0	2444031..2444552	-	173	19553505	-	NCgl2226	-	hypothetical protein
2227	 51.76	0	2444607..2445713	+	368	19553506	-	NCgl2227	-	PLP-dependent aminotransferase
2228	 52.46	0	2445717..2446997	+	426	19553507	-	NCgl2228	-	branched-chain amino acid permease
2229	 53.11	0	2447022..2448002	+	326	19553508	-	NCgl2229	-	coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase
2230	 48.38	-1	2448326..2450173	-	615	19553509	-	NCgl2230	-	EctP protein
2231	 49.71	-1	2450321..2450839	-	172	19553510	-	NCgl2231	-	hypothetical protein
2232	 51.83	0	2450857..2451786	-	309	19553511	-	NCgl2232	-	permease
2233	 54.30	0	2451792..2454638	-	948	19553512	-	NCgl2233	-	FAD/FMN-containing dehydrogenase
2234	 53.92	0	2454726..2455439	+	237	23308926	-	NCgl2234	-	transcriptional regulator
2235	 48.45	-1	2455450..2455707	-	85	19553515	-	NCgl2235	-	hypothetical protein
2236	 49.41	-1	2455718..2457067	-	449	19553516	-	NCgl2236	-	hypothetical protein
2237	 60.80	+1	2457335..2457760	-	141	19553517	-	NCgl2237	-	hypothetical protein
2238	 56.35	0	2457864..2459375	+	503	19553518	-	NCgl2238	-	ABC-type transporter, periplasmic component
2239	 53.04	0	2459372..2460340	+	322	19553519	-	NCgl2239	-	ABC-type transporter, permease component
2240	 55.84	0	2460341..2461171	+	276	19553520	-	NCgl2240	-	ABC-type transporter, permease component
2241	 55.56	0	2461164..2462603	+	479	19553521	-	NCgl2241	-	ABC-type transporter, duplicated ATPase component
2242	 52.90	0	2462600..2463151	-	183	19553522	-	NCgl2242	-	2'-5' RNA ligase
2243	 57.28	0	2463242..2464147	+	301	19553523	-	NCgl2243	-	sugar kinase
2244	 54.76	0	2464345..2465772	+	475	19553525	-	NCgl2244	-	uncharacterized iron-regulated membrane protein
2245	 52.82	0	2466036..2467010	-	324	19553526	-	NCgl2245	-	Na+-dependent transporter
2246	 52.89	0	2467078..2467926	+	282	23308927	-	NCgl2246	-	hypothetical protein
2247	 55.77	0	2467923..2470142	-	739	19553528	-	NCgl2247	-	malate synthase G
2248	 58.12	0	2470741..2472039	+	432	19553529	-	NCgl2248	-	isocitrate lyase
2249	 56.54	0	2472251..2472823	+	190	19553530	-	NCgl2249	-	thiamine biosynthesis protein x
2250	 53.09	0	2472891..2473553	-	220	19553531	-	NCgl2250	-	hypothetical protein
2251	 53.30	0	2473654..2475546	+	630	19553532	-	NCgl2251	-	choline-glycine betaine transporter
2252	 53.90	0	2475838..2476119	-	93	19553533	-	NCgl2252	-	hypothetical protein
54.31	MEAN

3.83	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.