IslandPathversion 1.0

IslandPath Analysis: Corynebacterium glutamicum ATCC 13032



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 54.31 STD DEV: 3.83
Corynebacterium glutamicum ATCC 13032, complete genome - 1..3309401
2993 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2115	 53.70	0	2326919..2327998	-	359	19553397	-	NCgl2115	-	cytochrome C oxidase subunit II
2116	 55.23	0	2328517..2330439	+	640	19553398	-	NCgl2116	-	asparagine synthase
2117	 57.10	0	2330584..2330928	-	114	19553399	-	NCgl2117	-	hypothetical protein
2118	 52.93	0	2331171..2331971	+	266	19553400	-	NCgl2118	-	hypothetical protein
2119	 55.81	0	2331975..2332499	+	174	19553401	-	NCgl2119	-	adenosyl cobinamide kinase
2120	 58.12	0	2332528..2333604	+	358	19553402	cobT	NCgl2120	-	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase
2121	 55.84	0	2333616..2334539	+	307	19553403	cobS	NCgl2121	-	cobalamin synthase
2122	 53.15	0	2335026..2335787	-	253	19553404	-	NCgl2122	-	putative short-chain dehydrogenase
2123	 53.35	0	2335913..2337016	-	367	19553405	-	NCgl2123	-	branched-chain amino acid aminotransferase
2124	 55.89	0	2337236..2338738	+	500	23308909	-	NCgl2124	-	leucyl aminopeptidase
2125	 50.00	-1	2338746..2339141	-	131	19553407	-	NCgl2125	-	hypothetical protein
2126	 56.85	0	2339270..2341297	+	675	19553408	aceF	NCgl2126	-	dihydrolipoamide acetyltransferase
2127	 53.31	0	2341413..2342168	+	251	19553409	lipB	NCgl2127	-	lipoyltransferase
2128	 55.30	0	2342305..2343351	+	348	19553410	-	NCgl2128	-	lipoyl synthase
2129	 57.73	0	2343480..2344262	+	260	19553411	-	NCgl2129	-	hypothetical protein
2130	 56.23	0	2344432..2346051	+	539	19553412	-	NCgl2130	-	permease
2131	 52.70	0	2346287..2347897	-	536	19553413	-	NCgl2131	-	transposase
2132	 57.11	0	2348076..2348567	-	163	19553414	-	NCgl2132	-	hypothetical protein
2133	 57.46	0	2348830..2350263	+	477	19553415	-	NCgl2133	-	glutamine synthase
2134	 46.76	-1	2350406..2350621	-	71	19553416	-	NCgl2134	-	hypothetical protein
2135	 57.21	0	2350910..2351311	-	133	19553417	-	NCgl2135	-	hypothetical protein
2136	 54.19	0	2351308..2351844	-	178	19553418	-	NCgl2136	-	NTP pyrophosphohydrolase
2137	 54.79	0	2351924..2352832	+	302	19553419	-	NCgl2137	-	coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase
2138	 53.03	0	2352834..2353229	+	131	19553420	-	NCgl2138	-	putative translation initiation inhibitor
2139	 56.15	0	2353598..2355043	-	481	19553421	-	NCgl2139	-	threonine synthase
2140	 54.34	0	2355184..2355402	+	72	19553422	-	NCgl2140	-	hypothetical protein
2141	 53.70	0	2355522..2356847	+	441	23308910	-	NCgl2141	-	major facilitator superfamily permease
2142	 53.54	0	2356864..2357358	+	164	19553424	-	NCgl2142	-	hypothetical protein
2143	 58.39	+1	2357265..2357711	+	148	23308911	-	NCgl2143	-	hypothetical protein
2144	 56.13	0	2357727..2358134	+	135	19553426	-	NCgl2144	-	hypothetical protein
2145	 53.62	0	2358151..2358633	-	160	19553427	-	NCgl2145	-	hypothetical protein
2146	 52.31	0	2358770..2359417	-	215	19553428	-	NCgl2146	-	hypothetical protein
2147	 52.01	0	2359612..2362749	-	1045	19553429	-	NCgl2147	-	glutamine synthetase adenylyltransferase
2148	 53.02	0	2362816..2364156	-	446	19553430	-	NCgl2148	-	glutamine synthase
2149	 50.59	0	2364353..2365459	+	368	19553431	-	NCgl2149	-	hypothetical protein
2150	 54.43	0	2365588..2367417	+	609	23308912	-	NCgl2150	-	hypothetical protein
2151	 51.37	0	2367471..2367653	-	60	19553433	-	NCgl2151	-	hypothetical protein
2152	 56.87	0	2367792..2369087	+	431	19553434	-	NCgl2152	-	galactokinase
2153	 54.62	0	2369114..2370541	-	475	19553435	-	NCgl2153	-	exoribonuclease
2154	 49.49	-1	2370424..2370912	+	162	23308913	-	NCgl2154	-	hypothetical protein
2155	 54.40	0	2371410..2372558	-	382	19553436	-	NCgl2155	-	bifunctional RNase H/acid phosphatase
2156	 58.89	+1	2372571..2373290	-	239	19553437	-	NCgl2156	-	Zn-ribbon protein
2157	 56.87	0	2373321..2374463	-	380	19553438	-	NCgl2157	-	hypothetical protein
2158	 52.36	0	2374545..2375201	+	218	19553439	-	NCgl2158	-	phosphatase
2159	 56.54	0	2375215..2375688	+	157	19553440	-	NCgl2159	-	protein-tyrosine-phosphatase
2160	 55.80	0	2375768..2376724	+	318	23308914	-	NCgl2160	-	hypothetical protein
2161	 55.56	0	2376996..2377391	-	131	23308915	-	NCgl2161	-	hypothetical protein
2162	 55.28	0	2377482..2377727	-	81	23308916	-	NCgl2162	-	hypothetical protein
2163	 50.68	0	2377768..2378280	+	170	19553442	-	NCgl2163	-	transcriptional regulator
2164	 51.57	0	2378335..2378493	+	52	19553443	-	NCgl2164	-	hypothetical protein
2165	 54.40	0	2378882..2379313	-	143	19553444	-	NCgl2165	-	hypothetical protein
2166	 40.52	-2	2379427..2379774	+	115	23308917	-	NCgl2166	-	hypothetical protein
2167	 56.09	0	2379980..2382748	+	922	19553445	aceE	NCgl2167	-	pyruvate dehydrogenase subunit E1
2168	 54.29	0	2382825..2383616	-	263	19553446	-	NCgl2168	-	ABC-type transporter, ATPase component
2169	 56.34	0	2383620..2384510	-	296	19553447	-	NCgl2169	-	ABC-type transporter, permease component
2170	 54.08	0	2384507..2385499	-	330	19553448	-	NCgl2170	-	hypothetical protein
2171	 61.35	+1	2385911..2386192	-	93	19553449	-	NCgl2171	-	hypothetical protein
2172	 51.20	0	2386210..2386584	+	124	19553450	-	NCgl2172	-	hypothetical protein
2173	 56.15	0	2386612..2387628	-	338	23308918	-	NCgl2173	-	hydrolase/acyltransferase
2174	 48.30	-1	2387668..2387961	+	97	19553452	-	NCgl2174	-	acyl carrier protein
2175	 53.50	0	2387998..2388825	+	275	19553453	-	NCgl2175	-	HAD family sugar phosphatase
2176	 58.55	+1	2388839..2389873	+	344	19553454	-	NCgl2176	-	hypothetical protein
2177	 54.08	0	2390432..2390860	-	142	19553455	-	NCgl2177	-	hypothetical protein
2178	 53.86	0	2391182..2392009	-	275	23308919	-	NCgl2178	-	beta-lactamase class C
2179	 55.12	0	2392073..2392531	-	152	19553457	-	NCgl2179	-	hypothetical protein
2180	 58.51	+1	2392577..2393140	-	187	19553458	-	NCgl2180	-	hypothetical protein
2181	 43.62	-2	2393165..2393407	+	80	19553459	-	NCgl2181	-	hypothetical protein
2182	 51.28	0	2393429..2393974	+	181	19553460	-	NCgl2182	-	hypothetical protein
2183	 50.58	0	2393971..2394399	-	142	19553461	-	NCgl2183	-	hypothetical protein
2184	 53.33	0	2394595..2394939	+	114	19553462	-	NCgl2184	-	hypothetical protein
2185	 57.58	0	2395217..2396767	+	516	19553463	-	NCgl2185	-	phosphodiesterase/alkaline phosphatase D
2186	 58.13	0	2397265..2399103	+	612	19553464	-	NCgl2186	-	hypothetical protein
2187	 55.56	0	2399159..2399401	+	80	19553465	-	NCgl2187	-	hypothetical protein
2188	 54.78	0	2399403..2401304	-	633	19553466	dnaG	NCgl2188	-	DNA primase
2189	 52.26	0	2401374..2401838	+	154	19553467	-	NCgl2189	-	hypothetical protein
2190	 53.66	0	2401839..2402084	+	81	19553468	-	NCgl2190	-	hypothetical protein
2191	 53.58	0	2402142..2404013	-	623	23308920	-	NCgl2191	-	D-fructose-6-phosphate amidotransferase
2192	 44.04	-2	2404524..2404850	+	108	19553470	-	NCgl2192	-	hypothetical protein
2193	 54.35	0	2404985..2406259	-	424	19553471	-	NCgl2193	-	deoxyguanosinetriphosphate triphosphohydrolase-like protein
2194	 52.95	0	2406260..2406937	-	225	23308921	-	NCgl2194	-	hypothetical protein
2195	 57.03	0	2406979..2409033	+	684	19553473	-	NCgl2195	-	chromosome segregation ATPase
2196	 58.49	+1	2409777..2410265	-	162	19553474	-	NCgl2196	-	hypothetical protein
2197	 47.01	-1	2410278..2410862	-	194	19553475	-	NCgl2197	-	hypothetical protein
2198	 54.11	0	2410954..2412339	-	461	19553476	-	NCgl2198	-	glycyl-tRNA synthetase
2199	 49.46	-1	2412581..2412952	+	123	19553477	-	NCgl2199	-	transcriptional regulator
2200	 53.33	0	2412993..2413427	+	144	19553478	-	NCgl2200	-	Fe2+/Zn2+ uptake regulation protein
2201	 58.30	+1	2413569..2415122	+	517	19553479	-	NCgl2201	-	hypothetical protein
2202	 62.85	+2	2415296..2416369	-	357	19553480	-	NCgl2202	-	hypothetical protein
2203	 55.46	0	2416369..2417100	-	243	19553481	-	NCgl2203	-	undecaprenyl pyrophosphate synthase
2204	 58.71	+1	2417220..2417948	-	242	19553482	recO	NCgl2204	-	DNA repair protein RecO
2205	 57.73	0	2417967..2418884	-	305	19553483	era	NCgl2205	-	GTP-binding protein Era
2206	 55.63	0	2418988..2420310	-	440	19553484	-	NCgl2206	-	CBS domain-containing protein
2207	 58.88	+1	2420311..2420901	-	196	19553485	-	NCgl2207	-	putative metalloprotease
2208	 56.03	0	2420898..2421950	-	350	23308922	-	NCgl2208	-	phosphate starvation-inducible protein PhoH
2209	 60.33	+1	2421973..2422698	-	241	19553487	-	NCgl2209	-	hypothetical protein
2210	 58.31	+1	2422698..2423846	-	382	19553488	-	NCgl2210	-	molecular chaperone
2211	 57.21	0	2423913..2424938	-	341	23308923	hrcA	NCgl2211	-	heat-inducible transcription repressor
2212	 58.97	+1	2424963..2426105	-	380	161486712	-	NCgl2212	-	coproporphyrinogen III oxidase
2213	 52.83	0	2426191..2426703	+	170	19553491	-	NCgl2213	-	hypothetical protein
2214	 59.77	+1	2426774..2427454	-	226	19553492	-	NCgl2214	-	hypothetical protein
54.31	MEAN

3.83	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.