IslandPathversion 1.0

IslandPath Analysis: Corynebacterium glutamicum ATCC 13032



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 54.31 STD DEV: 3.83
Corynebacterium glutamicum ATCC 13032, complete genome - 1..3309401
2993 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2078	 57.33	0	2282659..2283750	-	363	19553358	murG	NCgl2078	-	N-acetylglucosaminyl transferase
2079	 55.66	0	2283780..2285432	-	550	19553359	-	NCgl2079	-	cell division membrane protein
2080	 56.10	0	2285435..2286853	-	472	19553360	murD	NCgl2080	-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
2081	 53.22	0	2286860..2287960	-	366	19553361	mraY	NCgl2081	-	phospho-N-acetylmuramoyl-pentapeptide-transferase
2082	 54.89	0	2287967..2289511	-	514	19553362	-	NCgl2082	-	UDP-N-acetylmuramyl pentapeptide synthase
2083	 54.60	0	2289521..2291086	-	521	19553363	murE	NCgl2083	-	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
2084	 53.73	0	2291210..2293165	-	651	19553364	-	NCgl2084	-	cell division protein FtsI
2085	 57.14	0	2293321..2294118	-	265	23308902	-	NCgl2085	-	hypothetical protein
2086	 55.13	0	2294115..2295128	-	337	19553366	mraW	NCgl2086	-	S-adenosyl-methyltransferase MraW
2087	 55.32	0	2295374..2295805	-	143	19553367	-	NCgl2087	-	cell division protein MraZ
2088	 52.82	0	2296510..2296899	-	129	19553369	-	NCgl2088	-	hypothetical protein
2089	 55.16	0	2297229..2297654	-	141	19553371	-	NCgl2089	-	hypothetical protein
2090	 52.13	0	2297879..2298442	+	187	19553372	-	NCgl2090	-	hypothetical protein
2091	 53.52	0	2298449..2299429	-	326	23308903	-	NCgl2091	-	5,10-methylenetetrahydrofolate reductase
2092	 54.66	0	2299525..2300640	+	371	23308904	-	NCgl2092	-	geranylgeranyl pyrophosphate synthase
2093	 53.99	0	2300650..2302179	+	509	19553375	-	NCgl2093	-	hypothetical protein
2094	 54.03	0	2302249..2302620	-	123	19553376	-	NCgl2094	-	hypothetical protein
2095	 55.11	0	2302762..2304984	+	740	19553377	-	NCgl2095	-	serine/threonine protein kinase
2096	 55.45	0	2304984..2306222	+	412	19553378	-	NCgl2096	-	hypothetical protein
2097	 52.25	0	2306315..2307625	+	436	19553379	-	NCgl2097	-	hypothetical protein
2098	 55.17	0	2307695..2309095	-	466	19553380	-	NCgl2098	-	3-deoxy-D-arabino-heptulosonate 7-phosphate synthase AroG
2099	 53.25	0	2309171..2309677	-	168	19553381	-	NCgl2099	-	hypothetical protein
2100	 51.25	0	2309818..2312256	+	812	19553382	-	NCgl2100	-	hypothetical protein
2101	 54.34	0	2312361..2313812	+	483	19553383	-	NCgl2101	-	hypothetical protein
2102	 48.33	-1	2313914..2314093	-	59	19553384	-	NCgl2102	-	hypothetical protein
2103	 49.68	-1	2314234..2315487	-	417	19553385	-	NCgl2103	-	hypothetical protein
2104	 50.81	0	2315676..2316413	-	245	23308905	-	NCgl2104	-	1-acyl-sn-glycerol-3-phosphate acyltransferase
2105	 56.07	0	2316580..2317551	-	323	19553387	-	NCgl2105	-	glucose kinase
2106	 56.20	0	2317631..2318776	-	381	19553388	-	NCgl2106	-	glycosyltransferase
2107	 51.81	0	2318802..2319851	-	349	23308906	-	NCgl2107	-	cell wall-associated hydrolase
2108	 57.62	0	2319966..2320595	-	209	19553390	-	NCgl2108	-	cell wall-associated hydrolase
2109	 53.52	0	2321470..2323089	-	539	19553391	-	NCgl2109	-	cytochrome b subunit of the bc complex
2110	 53.95	0	2323086..2324312	-	408	19553392	-	NCgl2110	-	Rieske Fe-S protein
2111	 57.32	0	2324309..2325196	-	295	23308907	-	NCgl2111	-	cytochrome C
2112	 51.29	0	2325271..2325888	-	205	23308908	-	NCgl2112	-	cytochrome C oxidase subunit III
2113	 50.00	-1	2326119..2326274	-	51	19553395	-	NCgl2113	-	hypothetical protein
2114	 53.47	0	2326470..2326901	-	143	19553396	-	NCgl2114	-	hypothetical protein
2115	 53.70	0	2326919..2327998	-	359	19553397	-	NCgl2115	-	cytochrome C oxidase subunit II
2116	 55.23	0	2328517..2330439	+	640	19553398	-	NCgl2116	-	asparagine synthase
2117	 57.10	0	2330584..2330928	-	114	19553399	-	NCgl2117	-	hypothetical protein
2118	 52.93	0	2331171..2331971	+	266	19553400	-	NCgl2118	-	hypothetical protein
2119	 55.81	0	2331975..2332499	+	174	19553401	-	NCgl2119	-	adenosyl cobinamide kinase
2120	 58.12	0	2332528..2333604	+	358	19553402	cobT	NCgl2120	-	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase
2121	 55.84	0	2333616..2334539	+	307	19553403	cobS	NCgl2121	-	cobalamin synthase
2122	 53.15	0	2335026..2335787	-	253	19553404	-	NCgl2122	-	putative short-chain dehydrogenase
2123	 53.35	0	2335913..2337016	-	367	19553405	-	NCgl2123	-	branched-chain amino acid aminotransferase
2124	 55.89	0	2337236..2338738	+	500	23308909	-	NCgl2124	-	leucyl aminopeptidase
2125	 50.00	-1	2338746..2339141	-	131	19553407	-	NCgl2125	-	hypothetical protein
2126	 56.85	0	2339270..2341297	+	675	19553408	aceF	NCgl2126	-	dihydrolipoamide acetyltransferase
2127	 53.31	0	2341413..2342168	+	251	19553409	lipB	NCgl2127	-	lipoyltransferase
2128	 55.30	0	2342305..2343351	+	348	19553410	-	NCgl2128	-	lipoyl synthase
2129	 57.73	0	2343480..2344262	+	260	19553411	-	NCgl2129	-	hypothetical protein
2130	 56.23	0	2344432..2346051	+	539	19553412	-	NCgl2130	-	permease
2131	 52.70	0	2346287..2347897	-	536	19553413	-	NCgl2131	-	transposase
2132	 57.11	0	2348076..2348567	-	163	19553414	-	NCgl2132	-	hypothetical protein
2133	 57.46	0	2348830..2350263	+	477	19553415	-	NCgl2133	-	glutamine synthase
2134	 46.76	-1	2350406..2350621	-	71	19553416	-	NCgl2134	-	hypothetical protein
2135	 57.21	0	2350910..2351311	-	133	19553417	-	NCgl2135	-	hypothetical protein
2136	 54.19	0	2351308..2351844	-	178	19553418	-	NCgl2136	-	NTP pyrophosphohydrolase
2137	 54.79	0	2351924..2352832	+	302	19553419	-	NCgl2137	-	coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase
2138	 53.03	0	2352834..2353229	+	131	19553420	-	NCgl2138	-	putative translation initiation inhibitor
2139	 56.15	0	2353598..2355043	-	481	19553421	-	NCgl2139	-	threonine synthase
2140	 54.34	0	2355184..2355402	+	72	19553422	-	NCgl2140	-	hypothetical protein
2141	 53.70	0	2355522..2356847	+	441	23308910	-	NCgl2141	-	major facilitator superfamily permease
2142	 53.54	0	2356864..2357358	+	164	19553424	-	NCgl2142	-	hypothetical protein
2143	 58.39	+1	2357265..2357711	+	148	23308911	-	NCgl2143	-	hypothetical protein
2144	 56.13	0	2357727..2358134	+	135	19553426	-	NCgl2144	-	hypothetical protein
2145	 53.62	0	2358151..2358633	-	160	19553427	-	NCgl2145	-	hypothetical protein
2146	 52.31	0	2358770..2359417	-	215	19553428	-	NCgl2146	-	hypothetical protein
2147	 52.01	0	2359612..2362749	-	1045	19553429	-	NCgl2147	-	glutamine synthetase adenylyltransferase
2148	 53.02	0	2362816..2364156	-	446	19553430	-	NCgl2148	-	glutamine synthase
2149	 50.59	0	2364353..2365459	+	368	19553431	-	NCgl2149	-	hypothetical protein
2150	 54.43	0	2365588..2367417	+	609	23308912	-	NCgl2150	-	hypothetical protein
2151	 51.37	0	2367471..2367653	-	60	19553433	-	NCgl2151	-	hypothetical protein
2152	 56.87	0	2367792..2369087	+	431	19553434	-	NCgl2152	-	galactokinase
2153	 54.62	0	2369114..2370541	-	475	19553435	-	NCgl2153	-	exoribonuclease
2154	 49.49	-1	2370424..2370912	+	162	23308913	-	NCgl2154	-	hypothetical protein
2155	 54.40	0	2371410..2372558	-	382	19553436	-	NCgl2155	-	bifunctional RNase H/acid phosphatase
2156	 58.89	+1	2372571..2373290	-	239	19553437	-	NCgl2156	-	Zn-ribbon protein
2157	 56.87	0	2373321..2374463	-	380	19553438	-	NCgl2157	-	hypothetical protein
2158	 52.36	0	2374545..2375201	+	218	19553439	-	NCgl2158	-	phosphatase
2159	 56.54	0	2375215..2375688	+	157	19553440	-	NCgl2159	-	protein-tyrosine-phosphatase
2160	 55.80	0	2375768..2376724	+	318	23308914	-	NCgl2160	-	hypothetical protein
2161	 55.56	0	2376996..2377391	-	131	23308915	-	NCgl2161	-	hypothetical protein
2162	 55.28	0	2377482..2377727	-	81	23308916	-	NCgl2162	-	hypothetical protein
2163	 50.68	0	2377768..2378280	+	170	19553442	-	NCgl2163	-	transcriptional regulator
2164	 51.57	0	2378335..2378493	+	52	19553443	-	NCgl2164	-	hypothetical protein
2165	 54.40	0	2378882..2379313	-	143	19553444	-	NCgl2165	-	hypothetical protein
2166	 40.52	-2	2379427..2379774	+	115	23308917	-	NCgl2166	-	hypothetical protein
2167	 56.09	0	2379980..2382748	+	922	19553445	aceE	NCgl2167	-	pyruvate dehydrogenase subunit E1
2168	 54.29	0	2382825..2383616	-	263	19553446	-	NCgl2168	-	ABC-type transporter, ATPase component
2169	 56.34	0	2383620..2384510	-	296	19553447	-	NCgl2169	-	ABC-type transporter, permease component
2170	 54.08	0	2384507..2385499	-	330	19553448	-	NCgl2170	-	hypothetical protein
2171	 61.35	+1	2385911..2386192	-	93	19553449	-	NCgl2171	-	hypothetical protein
2172	 51.20	0	2386210..2386584	+	124	19553450	-	NCgl2172	-	hypothetical protein
2173	 56.15	0	2386612..2387628	-	338	23308918	-	NCgl2173	-	hydrolase/acyltransferase
2174	 48.30	-1	2387668..2387961	+	97	19553452	-	NCgl2174	-	acyl carrier protein
2175	 53.50	0	2387998..2388825	+	275	19553453	-	NCgl2175	-	HAD family sugar phosphatase
2176	 58.55	+1	2388839..2389873	+	344	19553454	-	NCgl2176	-	hypothetical protein
2177	 54.08	0	2390432..2390860	-	142	19553455	-	NCgl2177	-	hypothetical protein
54.31	MEAN

3.83	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.