IslandPathversion 1.0

IslandPath Analysis: Corynebacterium glutamicum ATCC 13032



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 54.31 STD DEV: 3.83
Corynebacterium glutamicum ATCC 13032, complete genome - 1..3309401
2993 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
162	 53.72	0	177334..178206	+	290	19551415	-	NCgl0162	-	sugar phosphate isomerase/epimerase
163	 54.39	0	178285..179661	+	458	19551416	-	NCgl0163	-	major facilitator superfamily permease
164	 57.12	0	179689..180714	+	341	19551417	-	NCgl0164	-	dehydrogenase
165	 54.47	0	180842..181300	+	152	19551418	-	NCgl0165	-	hypothetical protein
166	 48.44	-1	181426..181650	+	74	19551419	-	NCgl0166	-	hypothetical protein
167	 57.33	0	181684..182679	-	331	19551420	-	NCgl0167	-	transcriptional regulator
168	 57.69	0	182819..184054	+	411	19551421	-	NCgl0168	-	dehydrogenase
169	 57.30	0	184077..185090	+	337	19551422	-	NCgl0169	-	sugar phosphate isomerase/epimerase
170	 43.06	-2	185214..185645	+	143	19551423	-	NCgl0170	-	hypothetical protein
171	 53.92	0	186508..186711	+	67	19551424	-	NCgl0171	-	cold shock protein
172	 47.55	-1	186877..187305	+	142	19551425	-	NCgl0172	-	hypothetical protein
173	 44.98	-2	187302..187610	+	102	19551426	-	NCgl0173	-	transcriptional regulator
174	 48.20	-1	187687..188103	+	138	19551427	-	NCgl0174	-	SAM-dependent methyltransferase
175	 49.65	-1	188297..188725	-	142	19551428	-	NCgl0175	-	hypothetical protein
176	 53.68	0	188744..189736	-	330	23308779	-	NCgl0176	-	transcriptional regulator
177	 43.21	-2	189920..190324	+	134	19551430	-	NCgl0177	-	hypothetical protein
178	 51.83	0	190700..192175	-	491	19551431	-	NCgl0178	-	major facilitator superfamily permease
179	 52.70	0	192857..194467	+	536	19551432	-	NCgl0179	-	transposase
180	 52.51	0	194601..195038	-	145	19551433	-	NCgl0180	-	PAS/PAC domain-containing protein
181	 55.35	0	195240..199772	+	1510	19551434	-	NCgl0181	-	glutamine 2-oxoglutarate aminotransferase large subunit
182	 60.68	+1	199772..201292	+	506	19551435	gltD	NCgl0182	-	glutamate synthase subunit beta
183	 53.73	0	201757..203178	-	473	19551437	-	NCgl0183	-	hypothetical protein
184	 57.16	0	203538..206978	-	1146	19551438	-	NCgl0184	-	putative arabinosyl transferase
185	 53.79	0	207004..209037	-	677	19551439	-	NCgl0185	-	hypothetical protein
186	 57.09	0	209207..209968	-	253	19551440	-	NCgl0186	-	short chain dehydrogenase
187	 57.40	0	209989..211455	-	488	19551441	-	NCgl0187	-	FAD/FMN-containing dehydrogenase
188	 53.95	0	211532..211759	-	75	19551442	-	NCgl0188	-	hypothetical protein
189	 54.88	0	211795..212286	+	163	19551443	-	NCgl0189	-	hypothetical protein
190	 61.62	+1	212283..212738	+	151	19551444	-	NCgl0190	-	hypothetical protein
191	 61.98	+2	212764..213660	+	298	19551445	-	NCgl0191	-	hypothetical protein
192	 56.09	0	213676..214110	+	144	19551446	-	NCgl0192	-	hypothetical protein
193	 57.53	0	214121..214525	+	134	19551447	-	NCgl0193	-	hypothetical protein
194	 59.75	+1	214527..215162	+	211	19551448	-	NCgl0194	-	hypothetical protein
195	 57.77	0	215159..216091	-	310	19551449	-	NCgl0195	-	glycosyltransferase
196	 58.83	+1	216113..216712	-	199	19551450	-	NCgl0196	-	hypothetical protein
197	 60.73	+1	217138..217929	-	263	19551451	-	NCgl0197	-	ABC-type transporter, ATPase component
198	 57.84	0	217940..218845	-	301	19551452	-	NCgl0198	-	ABC-type transporter, permease component
199	 61.19	+1	218949..220154	+	401	19551453	-	NCgl0199	-	selenocysteine lyase
200	 55.05	0	220151..221131	-	326	19551454	-	NCgl0200	-	NADPH:quinone reductase or related Zn-dependent oxidoreductase
201	 53.79	0	221128..221655	-	175	19551455	-	NCgl0201	-	hypothetical protein
202	 57.80	0	221929..222210	+	93	19551456	-	NCgl0202	-	hypothetical protein
203	 53.09	0	222207..223694	-	495	19551457	-	NCgl0203	-	Na+/alanine symporter
204	 56.49	0	224354..225247	+	297	19551458	-	NCgl0204	-	hypothetical protein
205	 60.24	+1	225239..226312	-	357	19551459	-	NCgl0205	-	molybdopterin biosynthesis protein MoeB
206	 67.54	+2	226309..226767	-	152	19551460	-	NCgl0206	-	molybdopterin converting factor, large subunit
207	 60.61	+1	226757..227218	-	153	19551461	-	NCgl0207	-	molybdopterin biosynthesis enzyme
208	 53.29	0	227215..227685	-	156	19551462	moaC	NCgl0208	-	molybdenum cofactor biosynthesis protein C
209	 56.29	0	227700..228884	-	394	19551463	-	NCgl0209	-	molybdopterin biosynthesis enzyme
210	 50.71	0	228888..229727	-	279	19551464	-	NCgl0210	-	ABC-type transporter, permease component
211	 53.78	0	229708..230514	-	268	19551465	-	NCgl0211	-	ABC-type transporter, periplasmic component
212	 58.14	+1	230674..230931	+	85	19551466	-	NCgl0212	-	hypothetical protein
213	 56.50	0	230928..231842	-	304	19551467	-	NCgl0213	-	ABC-type transporter, ATPase component
214	 54.37	0	231845..232267	-	140	19551468	-	NCgl0214	-	hypothetical protein
215	 56.04	0	232257..233282	-	341	23308780	-	NCgl0215	-	putative aminotransferase
216	 45.10	-2	233913..234821	+	302	19551470	-	NCgl0216	-	hypothetical protein
217	 50.53	0	234907..235191	-	94	19551471	-	NCgl0217	-	hypothetical protein
218	 52.81	0	235448..236212	-	254	19551472	-	NCgl0218	-	helix-turn-helix containing transcriptional regulator
219	 52.84	0	236326..237345	+	339	19551473	-	NCgl0219	-	Zn-dependent alcohol dehydrogenase
220	 54.23	0	237345..238148	+	267	19551474	-	NCgl0220	-	monoamine oxidase
221	 53.01	0	238218..239528	+	436	19551475	-	NCgl0221	-	Mg/Co/Ni transporter MgtE
222	 52.08	0	239935..241518	+	527	19551476	-	NCgl0222	-	di- and tricarboxylate transporter
223	 61.00	+1	241880..242902	-	340	19551477	-	NCgl0223	-	prephenate dehydrogenase
224	 51.11	0	242940..243434	+	164	19551478	-	NCgl0224	-	hypothetical protein
225	 60.21	+1	243434..243913	+	159	19551479	-	NCgl0225	-	cytosine/adenosine deaminase
226	 51.96	0	244015..244218	+	67	19551480	-	NCgl0226	-	hypothetical protein
227	 47.18	-1	244466..244819	+	117	19551481	-	NCgl0227	-	hypothetical protein
228	 53.70	0	244902..247307	+	801	19551482	-	NCgl0228	-	RND superfamily drug exporter
229	 56.32	0	247319..248575	+	418	19551483	-	NCgl0229	-	queuine/archaeosine tRNA-ribosyltransferase
230	 53.39	0	248554..249306	-	250	19551484	-	NCgl0230	-	hypothetical protein
231	 57.62	0	249428..250510	+	360	19551485	-	NCgl0231	-	malic enzyme protein
232	 54.02	0	250536..251942	+	468	19551486	-	NCgl0232	-	ABC-type multidrug/protein/lipid transport system, ATPase component
233	 60.09	+1	251952..252833	+	293	19551487	-	NCgl0233	-	glutamyl-Q tRNA(Asp) synthetase
234	 53.58	0	252827..253819	-	330	19551488	-	NCgl0234	-	dioxygenase
235	 55.80	0	254326..255438	-	370	23308781	-	NCgl0235	-	putative transposase
236	 52.61	0	255489..255794	-	101	19551490	-	NCgl0236	-	hypothetical protein
237	 53.71	0	256617..257897	+	426	19551491	-	NCgl0237	-	aspartate transaminase
238	 57.07	0	257981..258532	+	183	19551492	-	NCgl0238	-	hypothetical protein
239	 60.22	+1	258551..260878	+	775	23308782	-	NCgl0239	-	DNA polymerase III subunits gamma and tau
240	 56.41	0	260987..261298	+	103	19551494	-	NCgl0240	-	hypothetical protein
241	 60.12	+1	261402..262058	+	218	19551495	recR	NCgl0241	-	recombination protein RecR
242	 64.54	+2	262543..263295	-	250	19551496	-	NCgl0242	-	glutamine amidotransferase
243	 61.01	+1	263295..264566	-	423	19551497	-	NCgl0243	-	UDP-N-acetylmuramyl tripeptide synthase
244	 55.86	0	264596..265678	-	360	19551498	-	NCgl0244	-	DNA polymerase III subunit epsilon
245	 57.90	0	266151..267896	-	581	161486715	-	NCgl0245	-	2-isopropylmalate synthase
246	 52.87	0	268255..269124	-	289	23308783	-	NCgl0246	-	hypothetical protein
247	 53.79	0	269371..270636	+	421	19551502	-	NCgl0247	-	aspartate kinase
248	 56.43	0	270660..271694	+	344	19551503	-	NCgl0248	-	aspartate-semialdehyde dehydrogenase
249	 45.37	-2	271761..273197	+	478	19551504	-	NCgl0249	-	hypothetical protein
250	 62.89	+2	273539..274120	-	193	19551505	-	NCgl0250	-	RNA polymerase sigma factor
251	 56.67	0	274324..275874	+	516	19551506	-	NCgl0251	-	catalase
252	 57.14	0	275954..276247	-	97	19551507	-	NCgl0252	-	hypothetical protein
253	 50.11	-1	276299..276763	-	154	23308784	-	NCgl0253	-	transcriptional regulator
254	 54.17	0	276865..277584	+	239	19551509	-	NCgl0254	-	branched-chain amino acid permease
255	 48.62	-1	277581..277907	+	108	19551510	-	NCgl0255	-	hypothetical protein
256	 53.06	0	277984..278277	-	97	19551511	-	NCgl0256	-	hypothetical protein
257	 52.01	0	278385..278732	-	115	19551512	-	NCgl0257	-	transcriptional regulator
258	 49.04	-1	278859..279896	+	345	19551513	-	NCgl0258	-	arsenite efflux pump ACR3
259	 51.54	0	279893..280282	+	129	19551514	-	NCgl0259	-	protein-tyrosine-phosphatase
260	 54.83	0	280346..280666	-	106	19551515	-	NCgl0260	-	putative monovalent cation/H+ antiporter subunit G
261	 51.65	0	280667..280939	-	90	19551516	-	NCgl0261	-	putative monovalent cation/H+ antiporter subunit F
54.31	MEAN

3.83	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.