IslandPath Analysis: Corynebacterium glutamicum ATCC 13032



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 54.31   STD DEV: 3.83
Corynebacterium glutamicum ATCC 13032, complete genome - 1..3309401
2993 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1999	 56.18	0	2194739..2196082	-	447	19553277	-	NCgl1999	-	glutamate dehydrogenase
2000	 58.58	+1	2196883..2198007	+	374	19553278	-	NCgl2000	-	glycerate kinase
2001	 50.63	0	2198004..2198402	-	132	19553279	-	NCgl2001	-	hypothetical protein
2002	 51.32	0	2198433..2199761	+	442	19553280	-	NCgl2002	-	hypothetical protein
2003	 54.74	0	2199808..2201073	+	421	19553281	-	NCgl2003	-	metal-dependent amidase/aminoacylase/carboxypeptidase
2004	 51.92	0	2201070..2201408	-	112	19553282	-	NCgl2004	-	hypothetical protein
2005	 49.82	-1	2201591..2201869	-	92	19553283	-	NCgl2005	-	hypothetical protein
2006	 56.64	0	2201989..2204541	-	850	23308891	-	NCgl2006	-	glucan phosphorylase
2007	 51.94	0	2204588..2205490	-	300	19553285	-	NCgl2007	-	ring-cleavage extradiol dioxygenase
2008	 55.67	0	2205665..2207092	-	475	23308892	-	NCgl2008	-	pyruvate kinase
2009	 52.89	0	2207299..2208249	-	316	19553287	-	NCgl2009	-	prolipoprotein diacylglyceryl transferase
2010	 50.64	0	2208364..2209149	-	261	19553288	-	NCgl2010	-	indole-3-glycerol phosphate synthase
2011	 56.97	0	2209229..2209888	-	219	19553289	-	NCgl2011	-	hypothetical protein
2012	 56.30	0	2209917..2210273	-	118	19553290	hisI	NCgl2012	-	phosphoribosyl-AMP cyclohydrolase
2013	 57.14	0	2210270..2211046	-	258	19553291	hisF	NCgl2013	-	imidazole glycerol phosphate synthase subunit HisF
2014	 54.47	0	2211048..2211875	-	275	19553292	-	NCgl2014	-	fructose-1,6-bisphosphatase
2015	 52.90	0	2211879..2212619	-	246	19553293	-	NCgl2015	-	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
2016	 53.14	0	2212638..2213273	-	211	19553294	hisH	NCgl2016	-	imidazole glycerol phosphate synthase subunit HisH
2017	 53.83	0	2214318..2215634	-	438	19553295	-	NCgl2017	-	major facilitator superfamily permease
2018	 50.00	-1	2215636..2215863	-	75	19553296	-	NCgl2018	-	hypothetical protein
2019	 57.31	0	2215866..2216474	-	202	19553297	hisB	NCgl2019	-	imidazoleglycerol-phosphate dehydratase
2020	 54.86	0	2216491..2217591	-	366	19553298	-	NCgl2020	-	histidinol-phosphate aminotransferase
2021	 57.11	0	2217597..2218925	-	442	19553299	hisD	NCgl2021	-	histidinol dehydrogenase
2022	 51.21	0	2219159..2220361	+	400	19553300	-	NCgl2022	-	hypothetical protein
2023	 53.36	0	2220456..2221109	-	217	19553301	-	NCgl2023	-	hypothetical protein
2024	 55.04	0	2221184..2221828	-	214	19553302	-	NCgl2024	-	hypothetical protein
2025	 50.17	-1	2221946..2222521	+	191	19553303	-	NCgl2025	-	transcriptional regulator
2026	 54.36	0	2222528..2225038	+	836	19553304	-	NCgl2026	-	pullulanase
2027	 54.48	0	2225149..2225952	+	267	19553305	-	NCgl2027	-	SAM-dependent methyltransferase
2028	 59.20	+1	2225987..2226763	-	258	19553306	-	NCgl2028	-	hydroxypyruvate isomerase
2029	 58.09	0	2226766..2227779	-	337	19553307	-	NCgl2029	-	dehydrogenase
2030	 55.66	0	2227906..2228904	+	332	23308893	-	NCgl2030	-	transcriptional regulator
2031	 57.68	0	2229096..2229896	-	266	19553309	-	NCgl2031	-	ABC-type transporter, ATPase component
2032	 53.79	0	2229897..2230937	-	346	23308894	-	NCgl2032	-	ABC-type transporter, permease component
2033	 51.57	0	2230944..2231294	-	116	19553311	-	NCgl2033	-	ABC-type transporter, periplasmic component
2034	 52.70	0	2232014..2232457	-	147	19553313	-	NCgl2034	-	transcriptional regulator
2035	 53.05	0	2232929..2234074	+	381	23308895	-	NCgl2035	-	DNA polymerase III epsilon subunit
2036	 50.90	0	2234159..2234767	+	202	19553315	-	NCgl2036	-	hypothetical protein
2037	 55.42	0	2234853..2237288	+	811	19553316	-	NCgl2037	-	maltooligosyl trehalose synthase
2038	 54.19	0	2237332..2238357	+	341	19553317	-	NCgl2038	-	hypothetical protein
2039	 48.06	-1	2238692..2239078	-	128	19553319	-	NCgl2039	-	hypothetical protein
2040	 51.43	0	2239506..2240555	-	349	19553320	-	NCgl2040	-	hypothetical protein
2041	 53.20	0	2240682..2241728	+	348	19553321	-	NCgl2041	-	coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase
2042	 59.58	+1	2241736..2242116	-	126	19553322	-	NCgl2042	-	ribosome-associated heat shock protein
2043	 49.57	-1	2242127..2242360	-	77	19553323	-	NCgl2043	-	hypothetical protein
2044	 51.22	0	2242391..2243044	-	217	19553324	-	NCgl2044	-	hypothetical protein
2045	 58.33	+1	2243036..2244823	+	595	23308896	-	NCgl2045	-	1,4-alpha-glucan branching enzyme
2046	 55.30	0	2244862..2246172	-	436	23308897	-	NCgl2046	-	threonine dehydratase
2047	 53.58	0	2246408..2246896	+	162	19553327	-	NCgl2047	-	hypothetical protein
2048	 55.39	0	2247004..2248209	-	401	19553328	-	NCgl2048	-	methionine synthase II
2049	 52.58	0	2248356..2251940	-	1194	23308898	dnaE	NCgl2049	-	DNA polymerase III subunit alpha
2050	 46.14	-2	2252018..2252860	+	280	19553330	-	NCgl2050	-	permease
2051	 45.65	-2	2253193..2253663	+	156	23308899	-	NCgl2051	-	hypothetical protein
2052	 48.53	-1	2253660..2254646	+	328	19553332	-	NCgl2052	-	Co/Zn/Cd cation transporter
2053	 51.46	0	2254681..2255568	-	295	19553333	-	NCgl2053	-	dehydrogenase
2054	 50.39	-1	2255736..2257025	-	429	23308900	-	NCgl2054	-	diaminopimelate decarboxylase
2055	 49.69	-1	2258360..2259313	-	317	19553335	-	NCgl2055	-	cysteine synthase
2056	 54.98	0	2259419..2260000	-	193	19553336	-	NCgl2056	-	hypothetical protein
2057	 59.06	+1	2260000..2260932	-	310	19553337	-	NCgl2057	-	23S RNA-specific pseudouridylate synthase
2058	 51.03	0	2260932..2261513	-	193	19553338	-	NCgl2058	-	lipoprotein signal peptidase
2059	 54.83	0	2261689..2262693	+	334	23308901	-	NCgl2059	-	hypothetical protein
2060	 56.62	0	2262851..2264503	+	550	19553340	-	NCgl2060	-	ABC-type transporter, ATPase component
2061	 53.23	0	2264507..2265109	-	200	19553341	-	NCgl2061	-	hypothetical protein
2062	 56.54	0	2265421..2266398	+	325	19553342	-	NCgl2062	-	L-asparaginase
2063	 47.49	-1	2266480..2266698	+	72	19553343	-	NCgl2063	-	hypothetical protein
2064	 54.34	0	2266895..2268298	-	467	19553344	-	NCgl2064	-	DNA polymerase IV
2065	 57.84	0	2268386..2269246	-	286	19553345	-	NCgl2065	-	DMT family permease
2066	 57.11	0	2269258..2270262	-	334	19553346	-	NCgl2066	-	transcriptional regulator
2067	 55.12	0	2270256..2270870	-	204	19553347	-	NCgl2067	-	hypothetical protein
2068	 56.18	0	2270986..2274150	-	1054	19553348	ileS	NCgl2068	-	isoleucyl-tRNA synthetase
2069	 46.30	-2	2274471..2274632	-	53	19553349	-	NCgl2069	-	hypothetical protein
2070	 57.65	0	2274765..2275862	-	365	19553350	-	NCgl2070	-	cell division initiation protein
2071	 50.35	-1	2276351..2276638	-	95	19553351	-	NCgl2071	-	hypothetical protein
2072	 55.77	0	2276879..2277337	-	152	19553352	-	NCgl2072	-	hypothetical protein
2073	 53.90	0	2277414..2278118	-	234	19553353	-	NCgl2073	-	TIM-barrel fold family protein
2074	 59.38	+1	2278120..2278860	-	246	19553354	-	NCgl2074	-	hypothetical protein
2075	 59.52	+1	2278888..2280216	-	442	19553355	-	NCgl2075	-	cell division protein FtsZ
2076	 50.97	0	2280468..2281136	-	222	19553356	-	NCgl2076	-	cell division septal protein
2077	 56.19	0	2281164..2282624	-	486	19553357	murC	NCgl2077	-	UDP-N-acetylmuramate--L-alanine ligase
2078	 57.33	0	2282659..2283750	-	363	19553358	murG	NCgl2078	-	N-acetylglucosaminyl transferase
2079	 55.66	0	2283780..2285432	-	550	19553359	-	NCgl2079	-	cell division membrane protein
2080	 56.10	0	2285435..2286853	-	472	19553360	murD	NCgl2080	-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
2081	 53.22	0	2286860..2287960	-	366	19553361	mraY	NCgl2081	-	phospho-N-acetylmuramoyl-pentapeptide-transferase
2082	 54.89	0	2287967..2289511	-	514	19553362	-	NCgl2082	-	UDP-N-acetylmuramyl pentapeptide synthase
2083	 54.60	0	2289521..2291086	-	521	19553363	murE	NCgl2083	-	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
2084	 53.73	0	2291210..2293165	-	651	19553364	-	NCgl2084	-	cell division protein FtsI
2085	 57.14	0	2293321..2294118	-	265	23308902	-	NCgl2085	-	hypothetical protein
2086	 55.13	0	2294115..2295128	-	337	19553366	mraW	NCgl2086	-	S-adenosyl-methyltransferase MraW
2087	 55.32	0	2295374..2295805	-	143	19553367	-	NCgl2087	-	cell division protein MraZ
2088	 52.82	0	2296510..2296899	-	129	19553369	-	NCgl2088	-	hypothetical protein
2089	 55.16	0	2297229..2297654	-	141	19553371	-	NCgl2089	-	hypothetical protein
2090	 52.13	0	2297879..2298442	+	187	19553372	-	NCgl2090	-	hypothetical protein
2091	 53.52	0	2298449..2299429	-	326	23308903	-	NCgl2091	-	5,10-methylenetetrahydrofolate reductase
2092	 54.66	0	2299525..2300640	+	371	23308904	-	NCgl2092	-	geranylgeranyl pyrophosphate synthase
2093	 53.99	0	2300650..2302179	+	509	19553375	-	NCgl2093	-	hypothetical protein
2094	 54.03	0	2302249..2302620	-	123	19553376	-	NCgl2094	-	hypothetical protein
2095	 55.11	0	2302762..2304984	+	740	19553377	-	NCgl2095	-	serine/threonine protein kinase
2096	 55.45	0	2304984..2306222	+	412	19553378	-	NCgl2096	-	hypothetical protein
2097	 52.25	0	2306315..2307625	+	436	19553379	-	NCgl2097	-	hypothetical protein
2098	 55.17	0	2307695..2309095	-	466	19553380	-	NCgl2098	-	3-deoxy-D-arabino-heptulosonate 7-phosphate synthase AroG
54.31	MEAN

3.83	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.