IslandPath Analysis: Corynebacterium glutamicum ATCC 13032



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 54.31   STD DEV: 3.83
Corynebacterium glutamicum ATCC 13032, complete genome - 1..3309401
2993 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1931	 57.67	0	2119715..2120359	+	214	19553210	-	NCgl1931	-	hypothetical protein
1932	 53.11	0	2120356..2121240	-	294	19553211	-	NCgl1932	-	methionine aminopeptidase
1933	 54.63	0	2121293..2123161	-	622	19553212	-	NCgl1933	-	cell division protein FtsI
1934	 56.24	0	2123216..2123848	-	210	19553213	-	NCgl1934	-	two-component system, response regulator
1935	 53.44	0	2123845..2124978	-	377	19553214	-	NCgl1935	-	two-component system, sensory transduction histidine kinase
1936	 58.44	+1	2125089..2126048	+	319	19553215	-	NCgl1936	-	ABC-type transporter, permease component
1937	 58.87	+1	2126064..2126756	+	230	19553216	-	NCgl1937	-	ABC-type transporter, ATPase component
1938	 56.01	0	2127347..2128528	-	393	19553217	ispG	NCgl1938	-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
1939	 57.45	0	2128666..2129880	-	404	19553218	-	NCgl1939	-	membrane-associated Zn-dependent protease 1
1940	 56.66	0	2129900..2131078	-	392	19553219	-	NCgl1940	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase
1941	 57.88	0	2131322..2131765	+	147	19553220	-	NCgl1941	-	hypothetical protein
1942	 50.35	-1	2131822..2133402	-	526	23308882	-	NCgl1942	-	hypothetical protein
1943	 51.17	0	2133403..2134260	-	285	19553222	-	NCgl1943	-	ABC-type transporter, ATPase component
1944	 54.41	0	2134451..2135551	-	366	19553223	-	NCgl1944	-	Fe-S-cluster redox protein
1945	 49.81	-1	2135884..2136144	+	86	23308883	-	NCgl1945	-	hypothetical protein
1946	 52.56	0	2136232..2137089	-	285	19553225	-	NCgl1946	-	CDP-diglyceride synthetase
1947	 51.79	0	2137283..2137840	-	185	19553226	frr	NCgl1947	-	ribosome recycling factor
1948	 54.10	0	2137933..2138664	-	243	23308884	pyrH	NCgl1948	-	uridylate kinase
1949	 56.88	0	2139000..2139827	-	275	19553228	tsf	NCgl1949	-	elongation factor Ts
1950	 57.39	0	2140068..2140886	-	272	19553229	rpsB	NCgl1950	-	30S ribosomal protein S2
1951	 53.54	0	2141269..2141763	+	164	19553230	-	NCgl1951	-	membrane metalloendopeptidase protein
1952	 52.11	0	2141760..2142707	-	315	19553231	xerC	NCgl1952	-	site-specific tyrosine recombinase XerC
1953	 52.83	0	2142882..2144066	-	394	19553232	-	NCgl1953	-	Rossmann-fold nucleotide-binding protein
1954	 53.67	0	2144063..2145586	-	507	23308885	-	NCgl1954	-	ATPase with chaperone activity
1955	 49.32	-1	2145573..2145941	-	122	19553234	-	NCgl1955	-	hypothetical protein
1956	 49.02	-1	2146261..2146566	-	101	19553235	-	NCgl1956	-	hypothetical protein
1957	 56.65	0	2146563..2147231	-	222	19553236	rnhB	NCgl1957	-	ribonuclease HII
1958	 54.12	0	2147258..2148046	-	262	19553237	-	NCgl1958	-	signal peptidase I
1959	 57.19	0	2148231..2149169	+	312	19553238	-	NCgl1959	-	ABC-type transport systems, periplasmic component
1960	 57.60	0	2149631..2149972	-	113	19553239	rplS	NCgl1960	-	50S ribosomal protein L19
1961	 56.16	0	2150335..2151000	+	221	19553240	thiE	NCgl1961	-	thiamine-phosphate pyrophosphorylase
1962	 55.73	0	2150997..2152121	+	374	19553241	-	NCgl1962	-	glycine/D-amino acid oxidase
1963	 53.54	0	2152135..2152332	+	65	19553242	-	NCgl1963	-	sulfur transfer protein
1964	 59.26	+1	2152334..2153116	+	260	19553243	thiG	NCgl1964	-	thiazole synthase
1965	 60.35	+1	2153118..2154194	+	358	19553244	-	NCgl1965	-	thiamine biosynthesis protein ThiF
1966	 57.22	0	2154457..2156733	-	758	19553245	-	NCgl1966	-	RNA binding protein
1967	 54.19	0	2156744..2157721	-	325	19553246	-	NCgl1967	-	transcriptional regulator
1968	 52.13	0	2157751..2159181	-	476	23308886	-	NCgl1968	-	di- and tricarboxylate transporters
1969	 53.99	0	2159284..2160537	-	417	23308887	-	NCgl1969	-	adenylosuccinate lyase
1970	 55.12	0	2161108..2161488	-	126	19553249	-	NCgl1970	-	hypothetical protein
1971	 55.56	0	2161504..2162196	-	230	19553250	-	NCgl1971	-	hypothetical protein
1972	 60.86	+1	2162193..2163071	-	292	19553251	trmD	NCgl1972	-	tRNA (guanine-N(1)-)-methyltransferase
1973	 53.92	0	2163098..2163748	+	216	19553252	-	NCgl1973	-	hypothetical protein
1974	 53.88	0	2163745..2164260	-	171	19553253	rimM	NCgl1974	-	16S rRNA-processing protein
1975	 56.13	0	2164390..2164740	+	116	19553254	-	NCgl1975	-	hypothetical protein
1976	 57.43	0	2164812..2165309	-	165	19553255	rpsP	NCgl1976	-	30S ribosomal protein S16
1977	 55.56	0	2165625..2166101	+	158	19553256	-	NCgl1977	-	ankyrin repeat-containing protein
1978	 50.00	-1	2166121..2166990	-	289	19553257	-	NCgl1978	-	ABC-type transporter, permease component
1979	 51.54	0	2166987..2167865	-	292	19553258	-	NCgl1979	-	ABC-type transporter, ATPase component
1980	 57.42	0	2167941..2169584	-	547	19553259	-	NCgl1980	-	signal recognition particle GTPase
1981	 57.62	0	2169663..2171741	-	692	19553260	glnD	NCgl1981	-	PII uridylyl-transferase
1982	 52.80	0	2171748..2172086	-	112	19553261	-	NCgl1982	-	nitrogen regulatory protein PII
1983	 54.97	0	2172151..2173467	-	438	23308888	-	NCgl1983	-	ammonia permeases
1984	 53.29	0	2173756..2175504	-	582	19553263	-	NCgl1984	-	signal recognition particle GTPase
1985	 56.47	0	2176107..2179481	-	1124	19553264	-	NCgl1985	-	hypothetical protein
1986	 58.02	0	2179625..2183092	-	1155	19553265	-	NCgl1986	-	chromosome segregation ATPase
1987	 52.63	0	2183107..2183391	-	94	23308889	-	NCgl1987	-	acylphosphatase
1988	 52.55	0	2183402..2185207	-	601	19553266	-	NCgl1988	-	hypothetical protein
1989	 49.36	-1	2185348..2186208	-	286	19553267	-	NCgl1989	-	transcriptional regulator
1990	 50.86	0	2186323..2187132	+	269	19553268	-	NCgl1990	-	permease
1991	 49.56	-1	2187230..2187679	-	149	19553269	-	NCgl1991	-	hypothetical protein
1992	 52.91	0	2187689..2188306	-	205	19553270	-	NCgl1992	-	Co/Zn/Cd efflux system component
1993	 54.36	0	2188310..2189170	-	286	19553271	-	NCgl1993	-	formamidopyrimidine-DNA glycosylase
1994	 56.59	0	2189163..2189906	-	247	19553272	rnc	NCgl1994	-	ribonuclease III
1995	 54.00	0	2189903..2190439	-	178	19553273	-	NCgl1995	-	hypothetical protein
1996	 56.69	0	2190537..2191328	-	263	19553274	-	NCgl1996	-	hypothetical protein
1997	 55.19	0	2191522..2193168	+	548	23308890	-	NCgl1997	-	ABC-type transporter, ATPase component and permease component
1998	 55.45	0	2193165..2194697	+	510	19553276	-	NCgl1998	-	ABC-type transporter, ATPase component and permease component
1999	 56.18	0	2194739..2196082	-	447	19553277	-	NCgl1999	-	glutamate dehydrogenase
2000	 58.58	+1	2196883..2198007	+	374	19553278	-	NCgl2000	-	glycerate kinase
2001	 50.63	0	2198004..2198402	-	132	19553279	-	NCgl2001	-	hypothetical protein
2002	 51.32	0	2198433..2199761	+	442	19553280	-	NCgl2002	-	hypothetical protein
2003	 54.74	0	2199808..2201073	+	421	19553281	-	NCgl2003	-	metal-dependent amidase/aminoacylase/carboxypeptidase
2004	 51.92	0	2201070..2201408	-	112	19553282	-	NCgl2004	-	hypothetical protein
2005	 49.82	-1	2201591..2201869	-	92	19553283	-	NCgl2005	-	hypothetical protein
2006	 56.64	0	2201989..2204541	-	850	23308891	-	NCgl2006	-	glucan phosphorylase
2007	 51.94	0	2204588..2205490	-	300	19553285	-	NCgl2007	-	ring-cleavage extradiol dioxygenase
2008	 55.67	0	2205665..2207092	-	475	23308892	-	NCgl2008	-	pyruvate kinase
2009	 52.89	0	2207299..2208249	-	316	19553287	-	NCgl2009	-	prolipoprotein diacylglyceryl transferase
2010	 50.64	0	2208364..2209149	-	261	19553288	-	NCgl2010	-	indole-3-glycerol phosphate synthase
2011	 56.97	0	2209229..2209888	-	219	19553289	-	NCgl2011	-	hypothetical protein
2012	 56.30	0	2209917..2210273	-	118	19553290	hisI	NCgl2012	-	phosphoribosyl-AMP cyclohydrolase
2013	 57.14	0	2210270..2211046	-	258	19553291	hisF	NCgl2013	-	imidazole glycerol phosphate synthase subunit HisF
2014	 54.47	0	2211048..2211875	-	275	19553292	-	NCgl2014	-	fructose-1,6-bisphosphatase
2015	 52.90	0	2211879..2212619	-	246	19553293	-	NCgl2015	-	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
2016	 53.14	0	2212638..2213273	-	211	19553294	hisH	NCgl2016	-	imidazole glycerol phosphate synthase subunit HisH
2017	 53.83	0	2214318..2215634	-	438	19553295	-	NCgl2017	-	major facilitator superfamily permease
2018	 50.00	-1	2215636..2215863	-	75	19553296	-	NCgl2018	-	hypothetical protein
2019	 57.31	0	2215866..2216474	-	202	19553297	hisB	NCgl2019	-	imidazoleglycerol-phosphate dehydratase
2020	 54.86	0	2216491..2217591	-	366	19553298	-	NCgl2020	-	histidinol-phosphate aminotransferase
2021	 57.11	0	2217597..2218925	-	442	19553299	hisD	NCgl2021	-	histidinol dehydrogenase
2022	 51.21	0	2219159..2220361	+	400	19553300	-	NCgl2022	-	hypothetical protein
2023	 53.36	0	2220456..2221109	-	217	19553301	-	NCgl2023	-	hypothetical protein
2024	 55.04	0	2221184..2221828	-	214	19553302	-	NCgl2024	-	hypothetical protein
2025	 50.17	-1	2221946..2222521	+	191	19553303	-	NCgl2025	-	transcriptional regulator
2026	 54.36	0	2222528..2225038	+	836	19553304	-	NCgl2026	-	pullulanase
2027	 54.48	0	2225149..2225952	+	267	19553305	-	NCgl2027	-	SAM-dependent methyltransferase
2028	 59.20	+1	2225987..2226763	-	258	19553306	-	NCgl2028	-	hydroxypyruvate isomerase
2029	 58.09	0	2226766..2227779	-	337	19553307	-	NCgl2029	-	dehydrogenase
2030	 55.66	0	2227906..2228904	+	332	23308893	-	NCgl2030	-	transcriptional regulator
54.31	MEAN

3.83	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.