IslandPathversion 1.0

IslandPath Analysis: Corynebacterium glutamicum ATCC 13032



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 54.31 STD DEV: 3.83
Corynebacterium glutamicum ATCC 13032, complete genome - 1..3309401
2993 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1872	 57.70	0	2055765..2056790	+	341	19553152	-	NCgl1872	-	hypothetical protein
1873	 53.57	0	2057117..2057788	-	223	19553153	-	NCgl1873	-	hypothetical protein
1874	 55.28	0	2057852..2059432	-	526	19553154	-	NCgl1874	-	2-methylthioadenine synthetase
1875	 52.46	0	2059750..2060502	+	250	19553155	-	NCgl1875	-	glutamate ABC-type transporter, ATPase component
1876	 55.86	0	2060620..2061507	+	295	19553156	-	NCgl1876	-	glutamate ABC-type transporter, periplasmic component
1877	 53.13	0	2061629..2062315	+	228	19553157	-	NCgl1877	-	glutamate ABC-type transporter, permease component
1878	 53.16	0	2062441..2063262	+	273	23308880	-	NCgl1878	-	glutamate ABC-type transporter, permease component
1879	 54.63	0	2063295..2063942	-	215	19553159	recX	NCgl1879	-	recombination regulator RecX
1880	 53.40	0	2063986..2065116	-	376	19553160	recA	NCgl1880	-	recombinase A
1881	 50.00	-1	2065391..2065606	-	71	19553161	-	NCgl1881	-	hypothetical protein
1882	 46.40	-2	2065664..2066344	-	226	19553162	-	NCgl1882	-	hypothetical protein
1883	 51.80	0	2066506..2067144	+	212	19553163	-	NCgl1883	-	hypothetical protein
1884	 49.93	-1	2067177..2067869	+	230	19553164	-	NCgl1884	-	ABC-type transporter, ATPase component
1885	 52.94	0	2067866..2068477	+	203	19553165	-	NCgl1885	-	ABC-type transporter, permease component
1886	 56.92	0	2068553..2069383	-	276	19553166	-	NCgl1886	-	phage shock protein A (IM30)
1887	 55.86	0	2069613..2069936	-	107	19553167	-	NCgl1887	-	transcriptional regulator
1888	 58.96	+1	2069994..2070512	-	172	19553168	-	NCgl1888	-	competence- and mitomycin-induced protein
1889	 51.67	0	2070516..2071142	-	208	19553169	-	NCgl1889	-	phosphatidylglycerophosphate synthase
1890	 51.39	0	2071315..2071602	+	95	19553170	-	NCgl1890	-	hypothetical protein
1891	 53.33	0	2071624..2071743	+	39	23308881	-	NCgl1891	-	hypothetical protein
1892	 53.42	0	2071796..2072905	-	369	19553171	-	NCgl1892	-	membrane protein TerC
1893	 56.91	0	2073291..2076170	-	959	19553172	-	NCgl1893	-	DNA translocase SpoIIIE-like protein
1894	 53.30	0	2076389..2077024	-	211	19553173	-	NCgl1894	-	hypothetical protein
1895	 56.00	0	2077119..2079275	-	718	19553174	-	NCgl1895	-	metallo-beta-lactamase superfamily hydrolase
1896	 52.65	0	2079278..2080183	-	301	19553175	dapA	NCgl1896	-	dihydrodipicolinate synthase
1897	 51.13	0	2080384..2081136	-	250	19553176	thyX	NCgl1897	-	FAD-dependent thymidylate synthase
1898	 54.48	0	2081188..2081934	-	248	19553177	-	NCgl1898	-	dihydrodipicolinate reductase
1899	 53.09	0	2082250..2082816	+	188	19553178	-	NCgl1899	-	hypothetical protein
1900	 57.16	0	2082929..2085190	-	753	19553179	-	NCgl1900	-	polynucleotide phosphorylase/polyadenylase
1901	 57.04	0	2085433..2085702	-	89	19553180	rpsO	NCgl1901	-	30S ribosomal protein S15
1902	 56.47	0	2085876..2086826	-	316	19553181	-	NCgl1902	-	inosine-uridine nucleoside N-ribohydrolase
1903	 56.43	0	2086916..2087941	-	341	19553182	-	NCgl1903	-	bifunctional riboflavin kinase/FMN adenylyltransferase
1904	 59.40	+1	2087973..2088866	+	297	19553183	truB	NCgl1904	-	tRNA pseudouridine synthase B
1905	 50.31	-1	2089215..2089868	-	217	19553184	-	NCgl1905	-	phosphopantetheinyl transferase component of siderophore synthetase
1906	 52.54	0	2089858..2090664	-	268	19553185	-	NCgl1906	-	hypothetical protein
1907	 52.60	0	2090748..2092055	-	435	19553186	-	NCgl1907	-	Na+-driven multidrug efflux pump
1908	 52.05	0	2092048..2093046	-	332	19553187	-	NCgl1908	-	exopolyphosphatase-related protein
1909	 54.67	0	2093052..2093501	-	149	19553188	rbfA	NCgl1909	-	ribosome-binding factor A
1910	 58.64	+1	2093709..2096723	-	1004	19553189	infB	NCgl1910	-	translation initiation factor IF-2
1911	 54.87	0	2096841..2097179	-	112	19553190	-	NCgl1911	-	nucleic-acid-binding protein
1912	 54.75	0	2097377..2098375	-	332	19553191	nusA	NCgl1912	-	transcription elongation factor NusA
1913	 56.61	0	2098409..2098945	-	178	19553192	-	NCgl1913	-	hypothetical protein
1914	 57.14	0	2099000..2099818	+	272	19553193	-	NCgl1914	-	hypothetical protein
1915	 58.63	+1	2100240..2101844	+	534	19553194	-	NCgl1915	-	ABC-type transporter, periplasmic component
1916	 53.51	0	2102023..2102949	+	308	19553195	-	NCgl1916	-	ABC-type transporter, permease component
1917	 54.40	0	2102942..2103976	+	344	19553196	-	NCgl1917	-	ABC-type transporter, permease component
1918	 55.54	0	2103973..2105706	+	577	19553197	-	NCgl1918	-	ABC-type transporter, duplicated ATPase component
1919	 58.57	+1	2105798..2107564	-	588	19553198	-	NCgl1919	-	prolyl-tRNA synthetase
1920	 56.23	0	2107652..2108389	+	245	19553199	-	NCgl1920	-	hypothetical protein
1921	 60.24	+1	2108386..2109147	-	253	19553200	-	NCgl1921	-	Mg-chelatase subunit ChlD
1922	 57.25	0	2109152..2110255	-	367	19553201	-	NCgl1922	-	Mg-chelatase subunit ChlI
1923	 52.32	0	2110431..2111183	-	250	19553202	-	NCgl1923	-	uroporphyrinogen-III methylase
1924	 54.18	0	2111238..2112662	+	474	19553203	-	NCgl1924	-	hypothetical protein
1925	 50.81	0	2112714..2113634	-	306	19553204	-	NCgl1925	-	hypothetical protein
1926	 54.62	0	2113861..2115363	-	500	19553205	-	NCgl1926	-	malate:quinone oxidoreductase
1927	 52.14	0	2115752..2116777	+	341	19553206	-	NCgl1927	-	hypothetical protein
1928	 53.43	0	2116916..2118313	+	465	19553207	-	NCgl1928	-	mycothione/glutathione reductase
1929	 54.31	0	2118736..2119083	+	115	19553208	-	NCgl1929	-	hypothetical protein
1930	 51.94	0	2119139..2119498	+	119	19553209	-	NCgl1930	-	hypothetical protein
1931	 57.67	0	2119715..2120359	+	214	19553210	-	NCgl1931	-	hypothetical protein
1932	 53.11	0	2120356..2121240	-	294	19553211	-	NCgl1932	-	methionine aminopeptidase
1933	 54.63	0	2121293..2123161	-	622	19553212	-	NCgl1933	-	cell division protein FtsI
1934	 56.24	0	2123216..2123848	-	210	19553213	-	NCgl1934	-	two-component system, response regulator
1935	 53.44	0	2123845..2124978	-	377	19553214	-	NCgl1935	-	two-component system, sensory transduction histidine kinase
1936	 58.44	+1	2125089..2126048	+	319	19553215	-	NCgl1936	-	ABC-type transporter, permease component
1937	 58.87	+1	2126064..2126756	+	230	19553216	-	NCgl1937	-	ABC-type transporter, ATPase component
1938	 56.01	0	2127347..2128528	-	393	19553217	ispG	NCgl1938	-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
1939	 57.45	0	2128666..2129880	-	404	19553218	-	NCgl1939	-	membrane-associated Zn-dependent protease 1
1940	 56.66	0	2129900..2131078	-	392	19553219	-	NCgl1940	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase
1941	 57.88	0	2131322..2131765	+	147	19553220	-	NCgl1941	-	hypothetical protein
1942	 50.35	-1	2131822..2133402	-	526	23308882	-	NCgl1942	-	hypothetical protein
1943	 51.17	0	2133403..2134260	-	285	19553222	-	NCgl1943	-	ABC-type transporter, ATPase component
1944	 54.41	0	2134451..2135551	-	366	19553223	-	NCgl1944	-	Fe-S-cluster redox protein
1945	 49.81	-1	2135884..2136144	+	86	23308883	-	NCgl1945	-	hypothetical protein
1946	 52.56	0	2136232..2137089	-	285	19553225	-	NCgl1946	-	CDP-diglyceride synthetase
1947	 51.79	0	2137283..2137840	-	185	19553226	frr	NCgl1947	-	ribosome recycling factor
1948	 54.10	0	2137933..2138664	-	243	23308884	pyrH	NCgl1948	-	uridylate kinase
1949	 56.88	0	2139000..2139827	-	275	19553228	tsf	NCgl1949	-	elongation factor Ts
1950	 57.39	0	2140068..2140886	-	272	19553229	rpsB	NCgl1950	-	30S ribosomal protein S2
1951	 53.54	0	2141269..2141763	+	164	19553230	-	NCgl1951	-	membrane metalloendopeptidase protein
1952	 52.11	0	2141760..2142707	-	315	19553231	xerC	NCgl1952	-	site-specific tyrosine recombinase XerC
1953	 52.83	0	2142882..2144066	-	394	19553232	-	NCgl1953	-	Rossmann-fold nucleotide-binding protein
1954	 53.67	0	2144063..2145586	-	507	23308885	-	NCgl1954	-	ATPase with chaperone activity
1955	 49.32	-1	2145573..2145941	-	122	19553234	-	NCgl1955	-	hypothetical protein
1956	 49.02	-1	2146261..2146566	-	101	19553235	-	NCgl1956	-	hypothetical protein
1957	 56.65	0	2146563..2147231	-	222	19553236	rnhB	NCgl1957	-	ribonuclease HII
1958	 54.12	0	2147258..2148046	-	262	19553237	-	NCgl1958	-	signal peptidase I
1959	 57.19	0	2148231..2149169	+	312	19553238	-	NCgl1959	-	ABC-type transport systems, periplasmic component
1960	 57.60	0	2149631..2149972	-	113	19553239	rplS	NCgl1960	-	50S ribosomal protein L19
1961	 56.16	0	2150335..2151000	+	221	19553240	thiE	NCgl1961	-	thiamine-phosphate pyrophosphorylase
1962	 55.73	0	2150997..2152121	+	374	19553241	-	NCgl1962	-	glycine/D-amino acid oxidase
1963	 53.54	0	2152135..2152332	+	65	19553242	-	NCgl1963	-	sulfur transfer protein
1964	 59.26	+1	2152334..2153116	+	260	19553243	thiG	NCgl1964	-	thiazole synthase
1965	 60.35	+1	2153118..2154194	+	358	19553244	-	NCgl1965	-	thiamine biosynthesis protein ThiF
1966	 57.22	0	2154457..2156733	-	758	19553245	-	NCgl1966	-	RNA binding protein
1967	 54.19	0	2156744..2157721	-	325	19553246	-	NCgl1967	-	transcriptional regulator
1968	 52.13	0	2157751..2159181	-	476	23308886	-	NCgl1968	-	di- and tricarboxylate transporters
1969	 53.99	0	2159284..2160537	-	417	23308887	-	NCgl1969	-	adenylosuccinate lyase
1970	 55.12	0	2161108..2161488	-	126	19553249	-	NCgl1970	-	hypothetical protein
1971	 55.56	0	2161504..2162196	-	230	19553250	-	NCgl1971	-	hypothetical protein
54.31	MEAN

3.83	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.