IslandPathversion 1.0

IslandPath Analysis: Corynebacterium glutamicum ATCC 13032



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 54.31 STD DEV: 3.83
Corynebacterium glutamicum ATCC 13032, complete genome - 1..3309401
2993 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1732	 52.44	0	1916944..1917168	+	74	19553007	-	NCgl1732	-	hypothetical protein
1733	 42.86	-2	1917326..1917514	-	62	19553008	-	NCgl1733	-	hypothetical protein
1734	 53.53	0	1917561..1918070	-	169	19553009	-	NCgl1734	-	hypothetical protein
1735	 41.81	-2	1919643..1920161	-	172	19553010	-	NCgl1735	-	hypothetical protein
1736	 43.09	-2	1920344..1921276	-	310	23308871	-	NCgl1736	-	hypothetical protein
1737	 52.74	0	1921544..1926010	-	1488	19553013	-	NCgl1737	-	hypothetical protein
1738	 48.97	-1	1926256..1926837	-	193	19553014	-	NCgl1738	-	hypothetical protein
1739	 41.88	-2	1927242..1928189	-	315	19553015	-	NCgl1739	-	hypothetical protein
1740	 49.43	-1	1928211..1928384	+	57	19553016	-	NCgl1740	-	hypothetical protein
1741	 47.09	-1	1928534..1928911	+	125	23308872	-	NCgl1741	-	hypothetical protein
1742	 41.67	-2	1929056..1930879	-	607	19553018	-	NCgl1742	-	hypothetical protein
1743	 44.61	-2	1930987..1931190	-	67	19553019	-	NCgl1743	-	hypothetical protein
1744	 45.22	-2	1931418..1931888	-	156	19553020	-	NCgl1744	-	hypothetical protein
1745	 47.92	-1	1931932..1932315	-	127	19553021	-	NCgl1745	-	transcriptional regulator
1746	 42.65	-2	1932370..1932777	-	135	19553022	-	NCgl1746	-	hypothetical protein
1747	 48.36	-1	1933519..1934250	-	243	19553023	-	NCgl1747	-	hypothetical protein
1748	 43.17	-2	1934968..1935912	-	314	19553024	-	NCgl1748	-	periplasmic serine protease
1749	 49.30	-1	1936283..1936852	+	189	19553025	-	NCgl1749	-	hypothetical protein
1750	 43.19	-2	1937202..1937414	+	70	19553026	-	NCgl1750	-	hypothetical protein
1751	 48.24	-1	1937483..1937737	-	84	19553027	-	NCgl1751	-	hypothetical protein
1752	 52.80	0	1938528..1939010	-	160	19553028	-	NCgl1752	-	hypothetical protein
1753	 53.27	0	1939146..1940138	+	330	19553029	-	NCgl1753	-	hypothetical protein
1754	 49.75	-1	1940257..1940847	+	196	19553030	-	NCgl1754	-	hypothetical protein
1755	 45.41	-2	1941107..1941553	+	148	19553031	-	NCgl1755	-	hypothetical protein
1756	 45.87	-2	1941729..1942430	-	233	19553032	-	NCgl1756	-	hypothetical protein
1757	 43.43	-2	1942519..1942815	+	98	19553033	-	NCgl1757	-	hypothetical protein
1758	 47.95	-1	1943095..1943313	+	72	23308873	-	NCgl1758	-	hypothetical protein
1759	 44.87	-2	1943345..1943656	+	103	19553034	-	NCgl1759	-	hypothetical protein
1760	 47.17	-1	1944127..1944567	+	146	19553035	-	NCgl1760	-	hypothetical protein
1761	 48.86	-1	1944605..1945435	-	276	19553036	-	NCgl1761	-	hypothetical protein
1762	 50.52	0	1945592..1945882	-	96	19553037	-	NCgl1762	-	hypothetical protein
1763	 47.40	-1	1945949..1946332	-	127	23308874	-	NCgl1763	-	hypothetical protein
1764	 42.22	-2	1946329..1946553	-	74	19553038	-	NCgl1764	-	hypothetical protein
1765	 45.83	-2	1946606..1947037	-	143	19553039	-	NCgl1765	-	hypothetical protein
1766	 48.55	-1	1947067..1948650	-	527	19553040	-	NCgl1766	-	hypothetical protein
1767	 49.73	-1	1949018..1951450	-	810	19553041	-	NCgl1767	-	hypothetical protein
1768	 46.09	-2	1951616..1952485	-	289	19553042	-	NCgl1768	-	hypothetical protein
1769	 53.16	0	1952543..1954822	-	759	19553043	-	NCgl1769	-	topoisomerase IA
1770	 50.31	-1	1956200..1958278	-	692	19553044	-	NCgl1770	-	hypothetical protein
1771	 46.42	-2	1958447..1959340	-	297	19553045	-	NCgl1771	-	uncharacterized low-complexity protein
1772	 55.63	0	1959762..1960196	-	144	19553046	-	NCgl1772	-	hypothetical protein
1773	 45.38	-2	1960368..1961114	-	248	19553047	-	NCgl1773	-	hypothetical protein
1774	 47.39	-1	1961111..1962967	-	618	19553048	-	NCgl1774	-	hypothetical protein
1775	 48.64	-1	1963136..1963429	-	97	19553049	-	NCgl1775	-	hypothetical protein
1776	 52.07	0	1963511..1964743	-	410	19553050	-	NCgl1776	-	hypothetical protein
1777	 52.50	0	1964724..1965902	-	392	19553051	-	NCgl1777	-	hypothetical protein
1778	 47.75	-1	1965908..1966240	-	110	19553052	-	NCgl1778	-	hypothetical protein
1779	 52.27	0	1966349..1966987	+	212	19553053	-	NCgl1779	-	micrococcal nuclease-like protein
1780	 49.38	-1	1967604..1968170	+	188	19553056	-	NCgl1780	-	hypothetical protein
1781	 53.81	0	1968264..1969718	+	484	19553057	-	NCgl1781	-	hypothetical protein
1782	 52.16	0	1969745..1970206	+	153	19553058	-	NCgl1782	-	hypothetical protein
1783	 49.96	-1	1970335..1971477	+	380	19553059	-	NCgl1783	-	hypothetical protein
1784	 54.85	0	1971672..1973093	+	473	19553060	-	NCgl1784	-	hypothetical protein
1785	 50.51	0	1973147..1973740	+	197	19553061	-	NCgl1785	-	hypothetical protein
1786	 51.88	0	1973809..1974207	+	132	19553062	-	NCgl1786	-	hypothetical protein
1787	 49.17	-1	1974267..1974506	+	79	19553063	-	NCgl1787	-	hypothetical protein
1788	 54.23	0	1975171..1975797	+	208	19553064	-	NCgl1788	-	single-stranded DNA-binding protein
1789	 49.83	-1	1975916..1976497	+	193	19553065	-	NCgl1789	-	hypothetical protein
1790	 49.25	-1	1976522..1976986	+	154	19553066	-	NCgl1790	-	hypothetical protein
1791	 52.75	0	1977043..1977552	+	169	19553067	-	NCgl1791	-	hypothetical protein
1792	 51.52	0	1977772..1978332	+	186	19553068	-	NCgl1792	-	hypothetical protein
1793	 52.01	0	1978452..1978724	+	90	19553069	-	NCgl1793	-	hypothetical protein
1794	 50.10	-1	1978738..1979220	+	160	19553070	-	NCgl1794	-	hypothetical protein
1795	 53.93	0	1979239..1979811	+	190	19553071	-	NCgl1795	-	hypothetical protein
1796	 50.05	-1	1979974..1980888	+	304	19553072	-	NCgl1796	-	membrane-associated Zn-dependent protease 1
1797	 48.28	-1	1980965..1981660	+	231	19553073	-	NCgl1797	-	hypothetical protein
1798	 52.30	0	1981663..1982031	+	122	19553074	-	NCgl1798	-	hypothetical protein
1799	 50.39	-1	1982176..1982820	+	214	19553075	-	NCgl1799	-	hypothetical protein
1800	 54.37	0	1983186..1983551	+	121	19553077	-	NCgl1800	-	hypothetical protein
1801	 51.81	0	1983611..1983886	+	91	19553078	-	NCgl1801	-	hypothetical protein
1802	 52.94	0	1983981..1984184	+	67	19553079	-	NCgl1802	-	hypothetical protein
1803	 54.43	0	1984217..1984453	+	78	19553080	-	NCgl1803	-	hypothetical protein
1804	 54.85	0	1984495..1984731	+	78	19553081	-	NCgl1804	-	hypothetical protein
1805	 51.81	0	1985092..1985367	+	91	19553082	-	NCgl1805	-	hypothetical protein
1806	 51.13	0	1985439..1986590	-	383	19553083	-	NCgl1806	-	integrase
1807	 53.18	0	1987504..1987896	-	130	23308875	-	NCgl1807	-	hypothetical protein
1808	 47.99	-1	1987884..1988306	-	140	19553085	-	NCgl1808	-	hypothetical protein
1809	 45.30	-2	1988367..1988483	-	38	19553086	-	NCgl1809	-	hypothetical protein
1810	 51.45	0	1988527..1988664	-	45	19553087	-	NCgl1810	-	hypothetical protein
1811	 54.39	0	1988775..1989605	-	276	19553088	-	NCgl1811	-	hypothetical protein
1812	 46.53	-2	1989871..1990764	-	297	19553089	-	NCgl1812	-	hypothetical protein
1813	 55.86	0	1991186..1991620	-	144	19553090	-	NCgl1813	-	hypothetical protein
1814	 45.38	-2	1991792..1992538	-	248	19553091	-	NCgl1814	-	hypothetical protein
1815	 47.57	-1	1992535..1994121	-	528	19553092	-	NCgl1815	-	hypothetical protein
1816	 50.00	-1	1994605..1995294	-	229	23308876	-	NCgl1816	-	hypothetical protein
1817	 52.43	0	1995780..1996088	-	102	19553096	-	NCgl1817	-	di- and tricarboxylate transporter
1818	 51.03	0	1996106..1996540	+	144	19553097	-	NCgl1818	-	hypothetical protein
1819	 49.14	-1	1996768..1997115	+	115	19553098	-	NCgl1819	-	hypothetical protein
1820	 49.26	-1	1997168..1997506	+	112	19553099	-	NCgl1820	-	hypothetical protein
1821	 54.79	0	1997545..1998243	+	232	19553100	-	NCgl1821	-	hypothetical protein
1822	 52.97	0	1998385..1999545	+	386	19553101	-	NCgl1822	-	hypothetical protein
1823	 54.26	0	1999542..1999952	+	136	19553102	-	NCgl1823	-	hypothetical protein
1824	 53.51	0	2000518..2001216	-	232	19553103	-	NCgl1824	-	hypothetical protein
1825	 57.26	0	2001489..2002115	+	208	19553104	-	NCgl1825	-	hypothetical protein
1826	 55.53	0	2002126..2003337	+	403	19553105	-	NCgl1826	-	ribonuclease D
1827	 53.01	0	2003399..2005309	-	636	19553106	-	NCgl1827	-	1-deoxy-D-xylulose-5-phosphate synthase
1828	 57.14	0	2005459..2006697	-	412	19553107	-	NCgl1828	-	SAM-dependent methyltransferase
1829	 57.41	0	2006774..2007637	-	287	19553108	-	NCgl1829	-	hypothetical protein
1830	 53.11	0	2007735..2008184	-	149	19553109	dut	NCgl1830	-	deoxyuridine 5'-triphosphate nucleotidohydrolase
1831	 54.71	0	2008250..2008801	+	183	23308877	-	NCgl1831	-	hypothetical protein
54.31	MEAN

3.83	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.