IslandPathversion 1.0

IslandPath Analysis: Corynebacterium glutamicum ATCC 13032



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 54.31 STD DEV: 3.83
Corynebacterium glutamicum ATCC 13032, complete genome - 1..3309401
2993 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1652	 44.66	-2	1815673..1816131	+	152	19552928	-	NCgl1652	-	hypothetical protein
1653	 51.32	0	1816451..1816639	+	62	19552929	-	NCgl1653	-	hypothetical protein
1654	 48.30	-1	1817132..1817806	+	224	19552930	-	NCgl1654	-	hypothetical protein
1655	 53.23	0	1817821..1818222	+	133	19552931	-	NCgl1655	-	hypothetical protein
1656	 43.08	-2	1818460..1818777	+	105	23308867	-	NCgl1656	-	hypothetical protein
1657	 44.10	-2	1818882..1819169	+	95	19552932	-	NCgl1657	-	hypothetical protein
1658	 44.76	-2	1820178..1822391	-	737	19552933	-	NCgl1658	-	hypothetical protein
1659	 45.70	-2	1822628..1824325	+	565	19552934	-	NCgl1659	-	hypothetical protein
1660	 50.90	0	1824371..1824592	+	73	19552935	-	NCgl1660	-	hypothetical protein
1661	 45.14	-2	1825175..1825606	-	143	19552936	-	NCgl1661	-	hypothetical protein
1662	 53.51	0	1825748..1826644	-	298	19552937	-	NCgl1662	-	putative transposase
1663	 53.63	0	1826024..1826560	+	178	23308868	-	NCgl1663	-	hypothetical protein
1664	 54.55	0	1826641..1826937	-	98	19552938	-	NCgl1664	-	transposase
1665	 58.33	+1	1829685..1829900	-	71	19552939	-	NCgl1665	-	hypothetical protein
1666	 51.92	0	1830765..1832066	+	433	19552940	-	NCgl1666	-	hypothetical protein
1667	 51.37	0	1832185..1834047	+	620	19552941	-	NCgl1667	-	single-stranded DNA-specific exonuclease
1668	 54.66	0	1834146..1834928	-	260	19552942	-	NCgl1668	-	hypothetical protein
1669	 50.68	0	1836552..1838327	+	591	19552943	-	NCgl1669	-	ATPase
1670	 50.79	0	1838349..1842140	+	1263	19552944	-	NCgl1670	-	hypothetical protein
1671	 47.56	-1	1842235..1842684	+	149	19552945	-	NCgl1671	-	hypothetical protein
1672	 48.10	-1	1842921..1843340	+	139	19552946	-	NCgl1672	-	hypothetical protein
1673	 52.28	0	1843518..1845359	+	613	19552947	-	NCgl1673	-	helicase
1674	 53.97	0	1845483..1845860	+	125	19552948	-	NCgl1674	-	hypothetical protein
1675	 51.92	0	1845872..1846210	+	112	19552949	-	NCgl1675	-	hypothetical protein
1676	 48.15	-1	1846330..1846680	-	116	19552950	-	NCgl1676	-	hypothetical protein
1677	 53.20	0	1847327..1847935	+	202	19552951	-	NCgl1677	-	hypothetical protein
1678	 50.56	0	1847938..1848477	+	179	19552952	-	NCgl1678	-	hypothetical protein
1679	 54.43	0	1848509..1849039	+	176	19552953	-	NCgl1679	-	hypothetical protein
1680	 52.67	0	1849039..1849788	+	249	19552954	-	NCgl1680	-	hypothetical protein
1681	 46.56	-2	1849781..1849969	+	62	19552955	-	NCgl1681	-	hypothetical protein
1682	 54.23	0	1850471..1851049	-	192	19552957	-	NCgl1682	-	hypothetical protein
1683	 56.29	0	1851220..1852443	+	407	19552958	-	NCgl1683	-	hypothetical protein
1684	 50.74	0	1852596..1853876	+	426	19552959	-	NCgl1684	-	hypothetical protein
1685	 51.74	0	1854282..1854857	+	191	19552960	-	NCgl1685	-	hypothetical protein
1686	 50.27	-1	1855058..1855240	+	60	19552961	-	NCgl1686	-	hypothetical protein
1687	 50.63	0	1855532..1856791	+	419	19552962	-	NCgl1687	-	hypothetical protein
1688	 47.24	-1	1856915..1858741	+	608	19552963	-	NCgl1688	-	hypothetical protein
1689	 49.85	-1	1858763..1860730	+	655	19552964	-	NCgl1689	-	ATPase with chaperone activity, ATP-binding subunit
1690	 46.33	-2	1860752..1861228	+	158	19552965	-	NCgl1690	-	hypothetical protein
1691	 52.83	0	1861320..1861478	+	52	19552966	-	NCgl1691	-	hypothetical protein
1692	 49.96	-1	1862945..1865302	+	785	23308869	-	NCgl1692	-	helicase
1693	 51.69	0	1865619..1865825	+	68	19552968	-	NCgl1693	-	hypothetical protein
1694	 51.71	0	1865842..1866222	+	126	19552969	-	NCgl1694	-	hypothetical protein
1695	 50.85	0	1866328..1866795	+	155	19552970	-	NCgl1695	-	ribosomal protein S13
1696	 50.19	-1	1866832..1867098	+	88	19552971	-	NCgl1696	-	hypothetical protein
1697	 52.31	0	1867098..1867877	+	259	19552972	-	NCgl1697	-	hypothetical protein
1698	 51.35	0	1867886..1868590	+	234	19552973	-	NCgl1698	-	hypothetical protein
1699	 52.19	0	1868668..1868895	-	75	19552974	-	NCgl1699	-	hypothetical protein
1700	 51.30	0	1868924..1871044	-	706	19552975	-	NCgl1700	-	hypothetical protein
1701	 52.14	0	1871098..1871331	-	77	19552976	-	NCgl1701	-	hypothetical protein
1702	 52.07	0	1871377..1877886	-	2169	19552977	-	NCgl1702	-	hypothetical protein
1703	 53.41	0	1878333..1879403	+	356	19552978	-	NCgl1703	-	site-specific DNA methylase or
1704	 49.21	-1	1879412..1880488	+	358	19552979	-	NCgl1704	-	stress-sensitive restriction system protein 1
1705	 49.34	-1	1880490..1882388	+	632	19552980	-	NCgl1705	-	stress-sensitive restriction system protein 2
1706	 50.52	0	1882467..1883990	-	507	19552981	-	NCgl1706	-	hypothetical protein
1707	 45.83	-2	1884217..1884888	-	223	19552982	-	NCgl1707	-	hypothetical protein
1708	 51.35	0	1885230..1887050	+	606	19552983	-	NCgl1708	-	hypothetical protein
1709	 48.15	-1	1887405..1887593	+	62	19552984	-	NCgl1709	-	hypothetical protein
1710	 52.52	0	1887685..1888002	-	105	19552985	-	NCgl1710	-	helicase
1711	 47.17	-1	1888228..1889094	-	288	23308870	-	NCgl1711	-	hypothetical protein
1712	 48.59	-1	1890025..1891617	-	530	19552987	-	NCgl1712	-	hypothetical protein
1713	 42.18	-2	1891829..1893037	-	402	19552988	-	NCgl1713	-	hypothetical protein
1714	 49.92	-1	1893385..1894632	-	415	19552989	-	NCgl1714	-	hypothetical protein
1715	 52.24	0	1894736..1897231	-	831	19552990	-	NCgl1715	-	hypothetical protein
1716	 49.44	-1	1897371..1899158	-	595	19552991	-	NCgl1716	-	ATPase with chaperone activity, ATP-binding subunit
1717	 49.05	-1	1899230..1899808	-	192	19552992	-	NCgl1717	-	hypothetical protein
1718	 53.85	0	1899801..1900775	-	324	19552993	-	NCgl1718	-	hypothetical protein
1719	 53.47	0	1901063..1901911	-	282	19552994	-	NCgl1719	-	hypothetical protein
1720	 55.56	0	1902002..1902883	-	293	19552995	-	NCgl1720	-	hypothetical protein
1721	 52.33	0	1903110..1905878	-	922	19552996	-	NCgl1721	-	hypothetical protein
1722	 50.58	0	1905970..1906572	-	200	19552997	-	NCgl1722	-	hypothetical protein
1723	 51.44	0	1906661..1907914	-	417	19552998	-	NCgl1723	-	hypothetical protein
1724	 52.36	0	1907962..1908660	-	232	19552999	-	NCgl1724	-	hypothetical protein
1725	 50.07	-1	1908782..1909498	-	238	19553000	-	NCgl1725	-	hypothetical protein
1726	 53.02	0	1909498..1910508	-	336	19553001	-	NCgl1726	-	hypothetical protein
1727	 51.50	0	1910639..1912300	-	553	19553002	-	NCgl1727	-	hypothetical protein
1728	 49.43	-1	1912330..1913733	-	467	19553003	-	NCgl1728	-	hypothetical protein
1729	 50.83	0	1913970..1914329	-	119	19553004	-	NCgl1729	-	hypothetical protein
1730	 45.37	-2	1914722..1916233	-	503	19553005	-	NCgl1730	-	hypothetical protein
1731	 45.31	-2	1916428..1916736	+	102	19553006	-	NCgl1731	-	hypothetical protein
1732	 52.44	0	1916944..1917168	+	74	19553007	-	NCgl1732	-	hypothetical protein
1733	 42.86	-2	1917326..1917514	-	62	19553008	-	NCgl1733	-	hypothetical protein
1734	 53.53	0	1917561..1918070	-	169	19553009	-	NCgl1734	-	hypothetical protein
1735	 41.81	-2	1919643..1920161	-	172	19553010	-	NCgl1735	-	hypothetical protein
1736	 43.09	-2	1920344..1921276	-	310	23308871	-	NCgl1736	-	hypothetical protein
1737	 52.74	0	1921544..1926010	-	1488	19553013	-	NCgl1737	-	hypothetical protein
1738	 48.97	-1	1926256..1926837	-	193	19553014	-	NCgl1738	-	hypothetical protein
1739	 41.88	-2	1927242..1928189	-	315	19553015	-	NCgl1739	-	hypothetical protein
1740	 49.43	-1	1928211..1928384	+	57	19553016	-	NCgl1740	-	hypothetical protein
1741	 47.09	-1	1928534..1928911	+	125	23308872	-	NCgl1741	-	hypothetical protein
1742	 41.67	-2	1929056..1930879	-	607	19553018	-	NCgl1742	-	hypothetical protein
1743	 44.61	-2	1930987..1931190	-	67	19553019	-	NCgl1743	-	hypothetical protein
1744	 45.22	-2	1931418..1931888	-	156	19553020	-	NCgl1744	-	hypothetical protein
1745	 47.92	-1	1931932..1932315	-	127	19553021	-	NCgl1745	-	transcriptional regulator
1746	 42.65	-2	1932370..1932777	-	135	19553022	-	NCgl1746	-	hypothetical protein
1747	 48.36	-1	1933519..1934250	-	243	19553023	-	NCgl1747	-	hypothetical protein
1748	 43.17	-2	1934968..1935912	-	314	19553024	-	NCgl1748	-	periplasmic serine protease
1749	 49.30	-1	1936283..1936852	+	189	19553025	-	NCgl1749	-	hypothetical protein
1750	 43.19	-2	1937202..1937414	+	70	19553026	-	NCgl1750	-	hypothetical protein
1751	 48.24	-1	1937483..1937737	-	84	19553027	-	NCgl1751	-	hypothetical protein
54.31	MEAN

3.83	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.