IslandPathversion 1.0

IslandPath Analysis: Corynebacterium glutamicum ATCC 13032



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 54.31 STD DEV: 3.83
Corynebacterium glutamicum ATCC 13032, complete genome - 1..3309401
2993 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1563	 61.44	+1	1721420..1721725	-	101	19552837	-	NCgl1563	-	transcriptional regulator
1564	 58.31	+1	1721780..1722856	+	358	19552838	-	NCgl1564	-	ABC-type transporter, permease component
1565	 53.75	0	1722870..1723829	+	319	23308860	-	NCgl1565	-	ABC-type transporter, periplasmic component
1566	 56.08	0	1723826..1724581	+	251	19552840	-	NCgl1566	-	ABC-type transporter, ATPase component
1567	 61.25	+1	1724609..1725439	-	276	19552841	aroE	NCgl1567	-	shikimate 5-dehydrogenase
1568	 55.98	0	1725456..1726625	-	389	19552842	-	NCgl1568	-	periplasmic solute-binding protein
1569	 56.83	0	1726622..1727170	-	182	19552843	-	NCgl1569	-	Holliday junction resolvase-like protein
1570	 57.74	0	1727382..1730048	-	888	19552844	alaS	NCgl1570	-	alanyl-tRNA synthetase
1571	 54.42	0	1730163..1731542	-	459	19552845	-	NCgl1571	-	recombination factor protein RarA
1572	 55.92	0	1731596..1732795	-	399	19552846	-	NCgl1572	-	hypothetical protein
1573	 58.46	+1	1732985..1734811	-	608	19552847	aspS	NCgl1573	-	aspartyl-tRNA synthetase
1574	 56.40	0	1735044..1735949	+	301	19552848	-	NCgl1574	-	metalloprotease
1575	 57.56	0	1736001..1738679	-	892	19552849	-	NCgl1575	-	helicase
1576	 58.06	0	1738710..1740569	-	619	19552850	-	NCgl1576	-	hypothetical protein
1577	 56.07	0	1740569..1741219	-	216	19552851	-	NCgl1577	-	hypothetical protein
1578	 54.44	0	1741313..1741909	+	198	19552852	-	NCgl1578	-	transcriptional regulator
1579	 51.46	0	1741893..1742609	+	238	19552853	-	NCgl1579	-	hypothetical protein
1580	 57.71	0	1742701..1743816	+	371	19552854	-	NCgl1580	-	coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase
1581	 53.49	0	1743843..1743971	+	42	19552855	-	NCgl1581	-	hypothetical protein
1582	 57.03	0	1744025..1744522	+	165	19552856	-	NCgl1582	-	flavoprotein
1583	 55.11	0	1744884..1746233	+	449	19552857	-	NCgl1583	-	L-serine deaminase
1584	 56.52	0	1746230..1747954	-	574	19552858	-	NCgl1584	-	glycerol-3-phosphate dehydrogenase
1585	 54.50	0	1747987..1749276	-	429	19552859	hisS	NCgl1585	-	histidyl-tRNA synthetase
1586	 51.25	0	1749322..1749963	-	213	19552860	-	NCgl1586	-	putative Zn-dependent hydrolase
1587	 58.72	+1	1750094..1750936	+	280	19552861	-	NCgl1587	-	peptidyl-prolyl cis-trans isomerase (rotamase)
1588	 51.97	0	1751497..1752054	+	185	19552862	-	NCgl1588	-	hypothetical protein
1589	 52.17	0	1752255..1752530	+	91	19552863	-	NCgl1589	-	hypothetical protein
1590	 55.23	0	1752612..1754894	-	760	19552864	-	NCgl1590	-	guanosine polyphosphate pyrophosphohydrolase/synthetase
1591	 53.76	0	1754922..1755479	-	185	19552865	-	NCgl1591	-	adenine phosphoribosyltransferase
1592	 53.50	0	1755483..1757084	-	533	19552866	-	NCgl1592	-	dipeptide-binding protein DciAE
1593	 56.02	0	1757586..1758797	-	403	19552867	secF	NCgl1593	-	preprotein translocase subunit SecF
1594	 55.97	0	1758800..1760734	-	644	23308861	secD	NCgl1594	-	preprotein translocase subunit SecD
1595	 53.01	0	1761002..1761367	-	121	19552869	-	NCgl1595	-	preprotein translocase subunit YajC
1596	 56.04	0	1761416..1762507	-	363	19552870	ruvB	NCgl1596	-	Holliday junction DNA helicase B
1597	 53.62	0	1762514..1763134	-	206	19552871	ruvA	NCgl1597	-	Holliday junction DNA helicase motor protein
1598	 54.35	0	1763174..1763839	-	221	23308862	ruvC	NCgl1598	-	Holliday junction resolvase
1599	 54.10	0	1763987..1764742	-	251	19552873	-	NCgl1599	-	hypothetical protein
1600	 50.77	0	1765012..1765860	-	282	19552874	-	NCgl1600	-	acyl-CoA thioesterase
1601	 50.52	0	1765969..1766445	+	158	19552875	-	NCgl1601	-	hypothetical protein
1602	 56.77	0	1766484..1766948	-	154	19552876	-	NCgl1602	-	hypothetical protein
1603	 58.84	+1	1766945..1768030	-	361	19552877	-	NCgl1603	-	glycosyltransferase
1604	 56.42	0	1768031..1768996	-	321	19552878	-	NCgl1604	-	lipid A biosynthesis lauroyl acyltransferase
1605	 54.39	0	1769019..1769678	-	219	19552879	-	NCgl1605	-	phosphatidylglycerophosphate synthase
1606	 53.22	0	1769678..1770220	-	180	19552880	-	NCgl1606	-	diadenosine tetraphosphate (Ap4A) hydrolase
1607	 55.26	0	1770324..1772384	-	686	19552881	thrS	NCgl1607	-	threonyl-tRNA synthetase
1608	 56.41	0	1772655..1773863	-	402	23308863	-	NCgl1608	-	iron-dependent peroxidase
1609	 53.01	0	1773890..1774438	-	182	19552883	-	NCgl1609	-	hypothetical protein
1610	 50.08	-1	1774454..1775068	-	204	19552884	-	NCgl1610	-	hypothetical protein
1611	 52.27	0	1778099..1779508	-	469	19552885	-	NCgl1611	-	hypothetical protein
1612	 55.09	0	1779551..1780051	-	166	19552886	-	NCgl1612	-	hypothetical protein
1613	 51.68	0	1780504..1780830	-	108	19552887	-	NCgl1613	-	hypothetical protein
1614	 52.46	0	1781016..1781585	-	189	23308864	-	NCgl1614	-	histone acetyltransferase HPA2
1615	 48.39	-1	1781924..1782793	+	289	19552889	-	NCgl1615	-	hypothetical protein
1616	 52.23	0	1782891..1785473	-	860	19552890	-	NCgl1616	-	hypothetical protein
1617	 53.14	0	1785729..1786844	-	371	19552891	-	NCgl1617	-	hypothetical protein
1618	 51.92	0	1786904..1788829	-	641	19552892	-	NCgl1618	-	hypothetical protein
1619	 52.67	0	1789080..1789565	+	161	19552893	-	NCgl1619	-	hypothetical protein
1620	 48.96	-1	1789580..1789771	+	63	19552894	-	NCgl1620	-	hypothetical protein
1621	 49.56	-1	1789833..1790060	+	75	19552895	-	NCgl1621	-	hypothetical protein
1622	 49.57	-1	1790458..1790802	-	114	19552896	-	NCgl1622	-	hypothetical protein
1623	 41.17	-2	1791842..1792441	+	199	19552897	-	NCgl1623	-	ABC-type transporter, ATPase component
1624	 40.42	-2	1792428..1793429	+	333	19552898	-	NCgl1624	-	ABC-type transporter, permease component
1625	 42.43	-2	1793714..1794823	+	369	19552899	-	NCgl1625	-	hypothetical protein
1626	 46.13	-2	1795591..1796184	+	197	23308865	-	NCgl1626	-	phosphopantothenoylcysteine synthetase/decarboxylase
1627	 39.98	-2	1796210..1797052	+	280	19552901	-	NCgl1627	-	hypothetical protein
1628	 53.66	0	1797350..1797772	+	140	19552902	-	NCgl1628	-	hypothetical protein
1629	 41.60	-2	1798020..1798757	-	245	19552903	-	NCgl1629	-	hypothetical protein
1630	 53.95	0	1799182..1799409	+	75	19552904	-	NCgl1630	-	hypothetical protein
1631	 51.05	0	1799704..1800369	+	221	19552905	-	NCgl1631	-	hypothetical protein
1632	 51.60	0	1800873..1801310	+	145	19552907	-	NCgl1632	-	hypothetical protein
1633	 53.30	0	1801494..1802099	+	201	19552908	-	NCgl1633	-	hypothetical protein
1634	 46.71	-1	1802152..1802577	-	141	19552909	-	NCgl1634	-	hypothetical protein
1635	 54.12	0	1802889..1803422	+	177	19552910	-	NCgl1635	-	hypothetical protein
1636	 52.43	0	1803630..1803896	+	88	19552911	-	NCgl1636	-	hypothetical protein
1637	 49.79	-1	1804134..1804601	+	155	19552912	-	NCgl1637	-	hypothetical protein
1638	 53.33	0	1804629..1804868	+	79	19552913	-	NCgl1638	-	hypothetical protein
1639	 49.92	-1	1804988..1805602	+	204	19552914	-	NCgl1639	-	hypothetical protein
1640	 51.80	0	1805775..1806689	+	304	19552915	-	NCgl1640	-	hypothetical protein
1641	 49.67	-1	1806941..1807399	+	152	19552917	-	NCgl1641	-	hypothetical protein
1642	 52.81	0	1807547..1808116	+	189	19552918	-	NCgl1642	-	hypothetical protein
1643	 49.31	-1	1808137..1808424	+	95	19552919	-	NCgl1643	-	hypothetical protein
1644	 50.30	-1	1808500..1808835	+	111	19552920	-	NCgl1644	-	hypothetical protein
1645	 46.50	-2	1809761..1810375	+	204	23308866	-	NCgl1645	-	site-specific recombinase
1646	 47.59	-1	1810637..1811548	+	303	19552922	-	NCgl1646	-	hypothetical protein
1647	 49.21	-1	1811564..1811941	+	125	19552923	-	NCgl1647	-	hypothetical protein
1648	 50.83	0	1812215..1812694	+	159	19552924	-	NCgl1648	-	protein-tyrosine phosphatase
1649	 50.75	0	1812881..1813609	+	242	19552925	-	NCgl1649	-	hypothetical protein
1650	 51.69	0	1813780..1814520	+	246	19552926	-	NCgl1650	-	transcriptional regulator
1651	 46.09	-2	1814887..1815654	+	255	19552927	-	NCgl1651	-	hypothetical protein
1652	 44.66	-2	1815673..1816131	+	152	19552928	-	NCgl1652	-	hypothetical protein
1653	 51.32	0	1816451..1816639	+	62	19552929	-	NCgl1653	-	hypothetical protein
1654	 48.30	-1	1817132..1817806	+	224	19552930	-	NCgl1654	-	hypothetical protein
1655	 53.23	0	1817821..1818222	+	133	19552931	-	NCgl1655	-	hypothetical protein
1656	 43.08	-2	1818460..1818777	+	105	23308867	-	NCgl1656	-	hypothetical protein
1657	 44.10	-2	1818882..1819169	+	95	19552932	-	NCgl1657	-	hypothetical protein
1658	 44.76	-2	1820178..1822391	-	737	19552933	-	NCgl1658	-	hypothetical protein
1659	 45.70	-2	1822628..1824325	+	565	19552934	-	NCgl1659	-	hypothetical protein
1660	 50.90	0	1824371..1824592	+	73	19552935	-	NCgl1660	-	hypothetical protein
1661	 45.14	-2	1825175..1825606	-	143	19552936	-	NCgl1661	-	hypothetical protein
1662	 53.51	0	1825748..1826644	-	298	19552937	-	NCgl1662	-	putative transposase
54.31	MEAN

3.83	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.