IslandPathversion 1.0

IslandPath Analysis: Corynebacterium glutamicum ATCC 13032



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 54.31 STD DEV: 3.83
Corynebacterium glutamicum ATCC 13032, complete genome - 1..3309401
2993 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1495	 55.17	0	1644315..1645514	-	399	19552769	-	NCgl1495	-	hypothetical protein
1496	 59.35	+1	1645661..1646371	+	236	19552770	-	NCgl1496	-	transposase
1497	 51.70	0	1646549..1647136	+	195	19552771	-	NCgl1497	-	hypothetical protein
1498	 54.59	0	1647209..1647622	-	137	19552772	-	NCgl1498	-	putative aromatic ring hydroxylating enzyme
1499	 57.11	0	1647648..1648097	-	149	19552773	-	NCgl1499	-	NifU-like protein
1500	 54.82	0	1648097..1649362	-	421	19552774	-	NCgl1500	-	selenocysteine lyase
1501	 56.39	0	1649364..1650122	-	252	19552775	-	NCgl1501	-	ABC-type transporter, ATPase component
1502	 58.35	+1	1650246..1651424	-	392	19552776	-	NCgl1502	-	iron-regulated ABC-type transporter SufB
1503	 54.98	0	1651430..1652875	-	481	19552777	-	NCgl1503	-	iron-regulated ABC-type transporter SufB
1504	 50.51	0	1652891..1653577	-	228	19552778	-	NCgl1504	-	transcriptional regulator
1505	 56.83	0	1653998..1655674	+	558	19552779	-	NCgl1505	-	hypothetical protein
1506	 54.35	0	1655681..1656703	+	340	19552780	-	NCgl1506	-	ABC-type transporter, ATPase component
1507	 55.14	0	1656712..1657518	+	268	19552781	-	NCgl1507	-	ABC-type transporter, permease component
1508	 53.89	0	1657638..1658678	+	346	19552782	-	NCgl1508	-	cytochrome oxidase assembly protein
1509	 56.51	0	1658788..1661139	+	783	19552783	-	NCgl1509	-	putative helicase
1510	 56.84	0	1661569..1662555	+	328	19552784	-	NCgl1510	-	NADPH:quinone reductase
1511	 55.66	0	1662627..1663598	-	323	19552785	-	NCgl1511	-	protoheme IX farnesyltransferase
1512	 58.49	+1	1664403..1666505	+	700	19552786	-	NCgl1512	-	transketolase
1513	 58.17	+1	1666673..1667755	+	360	19552787	-	NCgl1513	-	transaldolase
1514	 55.28	0	1667860..1669404	+	514	19552788	-	NCgl1514	-	glucose-6-phosphate 1-dehydrogenase
1515	 56.04	0	1669419..1670378	+	319	19552789	-	NCgl1515	-	hypothetical protein
1516	 54.80	0	1670395..1671102	+	235	19552790	-	NCgl1516	-	6-phosphogluconolactonase
1517	 53.43	0	1671270..1671677	-	135	19552791	-	NCgl1517	-	hypothetical protein
1518	 60.20	+1	1671750..1673126	+	458	19552792	-	NCgl1518	-	hypothetical protein
1519	 55.16	0	1673263..1674105	-	280	19552793	-	NCgl1519	-	glycine/D-amino acid oxidase
1520	 58.83	+1	1674120..1675268	-	382	19552794	-	NCgl1520	-	ornithine cyclodeaminase
1521	 55.41	0	1675265..1676623	-	452	19552795	-	NCgl1521	-	ammonia permease
1522	 52.14	0	1677046..1677279	-	77	19552796	secG	NCgl1522	-	preprotein translocase subunit SecG
1523	 56.96	0	1677384..1680143	-	919	19552797	-	NCgl1523	-	phosphoenolpyruvate carboxylase
1524	 57.56	0	1680329..1681108	-	259	19552798	tpiA	NCgl1524	-	triosephosphate isomerase
1525	 57.80	0	1681187..1682404	-	405	19552799	pgk	NCgl1525	-	phosphoglycerate kinase
1526	 56.82	0	1682621..1683625	-	334	19552800	-	NCgl1526	-	glyceraldehyde-3-phosphate dehydrogenase
1527	 52.03	0	1684114..1685097	-	327	19552801	-	NCgl1527	-	hypothetical protein
1528	 55.26	0	1685107..1686132	-	341	19552802	-	NCgl1528	-	hypothetical protein
1529	 52.58	0	1686149..1687078	-	309	19552803	-	NCgl1529	-	hypothetical protein
1530	 56.58	0	1687100..1689190	-	696	19552804	uvrC	NCgl1530	-	excinuclease ABC subunit C
1531	 55.84	0	1689198..1689779	-	193	19552805	-	NCgl1531	-	hypothetical protein
1532	 57.92	0	1689866..1690345	-	159	19552806	ribH	NCgl1532	-	riboflavin synthase subunit beta
1533	 56.82	0	1690357..1691625	-	422	19552807	-	NCgl1533	-	bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein
1534	 54.09	0	1691636..1692271	-	211	19552808	-	NCgl1534	-	riboflavin synthase subunit alpha
1535	 58.66	+1	1692272..1693258	-	328	19552809	-	NCgl1535	-	pyrimidine reductase
1536	 55.61	0	1693259..1693918	-	219	19552810	-	NCgl1536	-	ribulose-phosphate 3-epimerase
1537	 57.75	0	1693964..1695298	-	444	23308856	-	NCgl1537	-	tRNA and rRNA cytosine-C5-methylase
1538	 58.97	+1	1695496..1696443	-	315	19552812	fmt	NCgl1538	-	methionyl-tRNA formyltransferase
1539	 53.92	0	1696463..1696972	-	169	19552813	def	NCgl1539	-	peptide deformylase
1540	 57.18	0	1697081..1699147	-	688	19552814	-	NCgl1540	-	primosome assembly protein PriA
1541	 56.05	0	1699174..1700397	-	407	19552815	-	NCgl1541	-	S-adenosylmethionine synthetase
1542	 57.01	0	1700505..1701767	-	420	19552816	-	NCgl1542	-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase
1543	 54.86	0	1702029..1702316	-	95	19552817	-	NCgl1543	-	DNA-directed RNA polymerase subunit omega
1544	 52.54	0	1702408..1703037	-	209	23308857	gmk	NCgl1544	-	guanylate kinase
1545	 57.94	0	1702988..1703308	-	106	19552819	-	NCgl1545	-	hypothetical protein
1546	 58.54	+1	1703514..1704350	-	278	19552820	pyrF	NCgl1546	-	orotidine 5'-phosphate decarboxylase
1547	 58.20	+1	1704356..1707697	-	1113	19552821	carB	NCgl1547	-	carbamoyl phosphate synthase large subunit
1548	 57.45	0	1707703..1708884	-	393	19552822	-	NCgl1548	-	carbamoyl phosphate synthase small subunit
1549	 57.66	0	1709014..1710357	-	447	19552823	pyrC	NCgl1549	-	dihydroorotase
1550	 57.61	0	1710410..1711348	-	312	19552824	pyrB	NCgl1550	-	aspartate carbamoyltransferase catalytic subunit
1551	 53.89	0	1711349..1711927	-	192	19552825	-	NCgl1551	-	pyrimidine regulatory protein PyrR
1552	 57.84	0	1712596..1713762	+	388	23308858	-	NCgl1552	-	SulA family nucleoside-diphosphate sugar epimerase
1553	 55.00	0	1713830..1714309	+	159	19552827	-	NCgl1553	-	hypothetical protein
1554	 54.84	0	1714299..1714763	+	154	19552828	-	NCgl1554	-	hypothetical protein
1555	 49.77	-1	1714741..1714953	+	70	23308859	-	NCgl1555	-	hypothetical protein
1556	 55.41	0	1715379..1716062	-	227	19552830	nusB	NCgl1556	-	transcription antitermination protein NusB
1557	 57.98	0	1716129..1716692	-	187	19552831	-	NCgl1557	-	elongation factor P
1558	 58.52	+1	1716777..1717868	-	363	19552832	-	NCgl1558	-	Xaa-Pro aminopeptidase
1559	 58.47	+1	1717935..1719032	-	365	19552833	aroB	NCgl1559	-	3-dehydroquinate synthase
1560	 57.77	0	1719104..1719676	-	190	19552834	aroK	NCgl1560	-	shikimate kinase
1561	 56.61	0	1719666..1720898	-	410	19552835	-	NCgl1561	-	chorismate synthase
1562	 49.52	-1	1720968..1721381	-	137	19552836	-	NCgl1562	-	signal peptidase
1563	 61.44	+1	1721420..1721725	-	101	19552837	-	NCgl1563	-	transcriptional regulator
1564	 58.31	+1	1721780..1722856	+	358	19552838	-	NCgl1564	-	ABC-type transporter, permease component
1565	 53.75	0	1722870..1723829	+	319	23308860	-	NCgl1565	-	ABC-type transporter, periplasmic component
1566	 56.08	0	1723826..1724581	+	251	19552840	-	NCgl1566	-	ABC-type transporter, ATPase component
1567	 61.25	+1	1724609..1725439	-	276	19552841	aroE	NCgl1567	-	shikimate 5-dehydrogenase
1568	 55.98	0	1725456..1726625	-	389	19552842	-	NCgl1568	-	periplasmic solute-binding protein
1569	 56.83	0	1726622..1727170	-	182	19552843	-	NCgl1569	-	Holliday junction resolvase-like protein
1570	 57.74	0	1727382..1730048	-	888	19552844	alaS	NCgl1570	-	alanyl-tRNA synthetase
1571	 54.42	0	1730163..1731542	-	459	19552845	-	NCgl1571	-	recombination factor protein RarA
1572	 55.92	0	1731596..1732795	-	399	19552846	-	NCgl1572	-	hypothetical protein
1573	 58.46	+1	1732985..1734811	-	608	19552847	aspS	NCgl1573	-	aspartyl-tRNA synthetase
1574	 56.40	0	1735044..1735949	+	301	19552848	-	NCgl1574	-	metalloprotease
1575	 57.56	0	1736001..1738679	-	892	19552849	-	NCgl1575	-	helicase
1576	 58.06	0	1738710..1740569	-	619	19552850	-	NCgl1576	-	hypothetical protein
1577	 56.07	0	1740569..1741219	-	216	19552851	-	NCgl1577	-	hypothetical protein
1578	 54.44	0	1741313..1741909	+	198	19552852	-	NCgl1578	-	transcriptional regulator
1579	 51.46	0	1741893..1742609	+	238	19552853	-	NCgl1579	-	hypothetical protein
1580	 57.71	0	1742701..1743816	+	371	19552854	-	NCgl1580	-	coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase
1581	 53.49	0	1743843..1743971	+	42	19552855	-	NCgl1581	-	hypothetical protein
1582	 57.03	0	1744025..1744522	+	165	19552856	-	NCgl1582	-	flavoprotein
1583	 55.11	0	1744884..1746233	+	449	19552857	-	NCgl1583	-	L-serine deaminase
1584	 56.52	0	1746230..1747954	-	574	19552858	-	NCgl1584	-	glycerol-3-phosphate dehydrogenase
1585	 54.50	0	1747987..1749276	-	429	19552859	hisS	NCgl1585	-	histidyl-tRNA synthetase
1586	 51.25	0	1749322..1749963	-	213	19552860	-	NCgl1586	-	putative Zn-dependent hydrolase
1587	 58.72	+1	1750094..1750936	+	280	19552861	-	NCgl1587	-	peptidyl-prolyl cis-trans isomerase (rotamase)
1588	 51.97	0	1751497..1752054	+	185	19552862	-	NCgl1588	-	hypothetical protein
1589	 52.17	0	1752255..1752530	+	91	19552863	-	NCgl1589	-	hypothetical protein
1590	 55.23	0	1752612..1754894	-	760	19552864	-	NCgl1590	-	guanosine polyphosphate pyrophosphohydrolase/synthetase
1591	 53.76	0	1754922..1755479	-	185	19552865	-	NCgl1591	-	adenine phosphoribosyltransferase
1592	 53.50	0	1755483..1757084	-	533	19552866	-	NCgl1592	-	dipeptide-binding protein DciAE
1593	 56.02	0	1757586..1758797	-	403	19552867	secF	NCgl1593	-	preprotein translocase subunit SecF
1594	 55.97	0	1758800..1760734	-	644	23308861	secD	NCgl1594	-	preprotein translocase subunit SecD
54.31	MEAN

3.83	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.