IslandPath Analysis: Corynebacterium glutamicum ATCC 13032



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 54.31   STD DEV: 3.83
Corynebacterium glutamicum ATCC 13032, complete genome - 1..3309401
2993 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1424	 52.93	0	1557856..1559493	-	545	19552695	-	NCgl1424	-	apolipoprotein N-acyltransferase
1425	 52.60	0	1559494..1560069	-	191	19552696	fxsA	NCgl1425	-	FxsA
1426	 57.78	0	1560434..1561750	-	438	19552697	-	NCgl1426	-	hypothetical protein
1427	 55.34	0	1561780..1562556	+	258	19552698	-	NCgl1427	-	hypothetical protein
1428	 53.71	0	1562522..1563802	-	426	19552699	-	NCgl1428	-	precorrin-6B methylase 1
1429	 55.20	0	1564562..1565302	-	246	19552700	-	NCgl1429	-	hypothetical protein
1430	 54.39	0	1565299..1566438	-	379	19552701	-	NCgl1430	-	Xaa-Pro aminopeptidase
1431	 52.96	0	1566468..1567109	+	213	19552702	-	NCgl1431	-	hypothetical protein
1432	 54.59	0	1567114..1569903	-	929	19552703	-	NCgl1432	-	putative helicase
1433	 54.07	0	1569929..1570873	-	314	19552704	-	NCgl1433	-	Sec-independent protein secretion pathway component TatC
1434	 54.40	0	1571065..1571382	-	105	19552705	tatA	NCgl1434	-	twin argininte translocase protein A
1435	 50.41	-1	1571503..1572486	-	327	19552706	-	NCgl1435	-	transcriptional regulator
1436	 58.77	+1	1572489..1573463	-	324	19552707	-	NCgl1436	-	transcriptional regulator
1437	 51.94	0	1573488..1574927	-	479	19552708	-	NCgl1437	-	hypothetical protein
1438	 52.82	0	1574942..1575136	-	64	19552709	-	NCgl1438	-	hypothetical protein
1439	 54.63	0	1575403..1576947	-	514	19552710	-	NCgl1439	-	hypothetical protein
1440	 54.52	0	1576948..1578528	-	526	19552711	-	NCgl1440	-	ATPase of the AAA+ class
1441	 56.51	0	1578564..1579400	-	278	19552712	-	NCgl1441	-	SAM-dependent methyltransferase involved in tRNA-Met maturation
1442	 55.27	0	1579446..1580708	-	420	19552713	-	NCgl1442	-	putative aminopeptidase 2
1443	 54.12	0	1580807..1581643	+	278	19552714	-	NCgl1443	-	endonuclease
1444	 55.06	0	1581851..1582117	+	88	19552715	-	NCgl1444	-	plasmid maintenance system antidote protein
1445	 54.29	0	1582270..1583481	-	403	19552716	-	NCgl1445	-	major facilitator superfamily permease
1446	 53.38	0	1583910..1585490	-	526	19552717	aspA	NCgl1446	-	aspartate ammonia-lyase
1447	 57.21	0	1585600..1586445	-	281	19552718	hisG	NCgl1447	-	ATP phosphoribosyltransferase
1448	 51.89	0	1586462..1586725	-	87	19552719	hisE	NCgl1448	-	phosphoribosyl-ATP pyrophosphatase
1449	 58.62	+1	1586809..1587504	-	231	19552720	-	NCgl1449	-	phosphatase/phosphohexomutase
1450	 56.06	0	1587570..1591235	-	1221	19552721	-	NCgl1450	-	methionine synthase I cobalamin-binding subunit
1451	 52.53	0	1591343..1591915	+	190	19552722	-	NCgl1451	-	hypothetical protein
1452	 50.15	-1	1591938..1592966	-	342	23308851	-	NCgl1452	-	K+ transport flavoprotein
1453	 46.65	-1	1593337..1594515	+	392	23308852	-	NCgl1453	-	arsenite efflux pump ACR3
1454	 48.23	-1	1594532..1594954	+	140	23308853	-	NCgl1454	-	protein-tyrosine-phosphatase
1455	 45.95	-2	1595030..1595671	+	213	19552726	-	NCgl1455	-	protein-tyrosine-phosphatase
1456	 46.19	-2	1595841..1596221	-	126	19552727	-	NCgl1456	-	hypothetical protein
1457	 57.88	0	1596246..1597508	-	420	19552728	cysS	NCgl1457	-	cysteinyl-tRNA synthetase
1458	 54.99	0	1597742..1598623	-	293	19552729	uppP	NCgl1458	-	undecaprenyl pyrophosphate phosphatase
1459	 57.41	0	1598667..1599617	+	316	23308854	-	NCgl1459	-	oxidoreductase
1460	 56.79	0	1599679..1600680	+	333	23308855	-	NCgl1460	-	hypothetical protein
1461	 56.81	0	1600692..1601807	+	371	19552732	-	NCgl1461	-	dihydroorotate dehydrogenase 2
1462	 44.96	-2	1601928..1602185	-	85	19552733	-	NCgl1462	-	hypothetical protein
1463	 56.30	0	1602660..1603469	+	269	19552734	-	NCgl1463	-	hypothetical protein
1464	 55.73	0	1603472..1604632	+	386	19552735	-	NCgl1464	-	putative transposase
1465	 52.18	0	1604827..1605261	-	144	19552736	-	NCgl1465	-	hypothetical protein
1466	 57.68	0	1605278..1605811	-	177	19552737	-	NCgl1466	-	phospholipid-binding protein
1467	 57.17	0	1605858..1607657	-	599	19552738	-	NCgl1467	-	ABC-type transporter, ATPase component and permease component
1468	 54.21	0	1607658..1609247	-	529	19552739	-	NCgl1468	-	ABC-type transporter, ATPase component and permease component
1469	 53.76	0	1610236..1610847	+	203	19552740	-	NCgl1469	-	histone acetyltransferase HPA2 and related acetyltransferase
1470	 57.51	0	1611147..1612238	-	363	19552741	-	NCgl1470	-	arginine/ornithine transport system ATPase
1471	 56.82	0	1612231..1614444	-	737	19552742	-	NCgl1471	-	methylmalonyl-CoA mutase
1472	 54.51	0	1614448..1616298	-	616	19552743	-	NCgl1472	-	methylmalonyl-CoA mutase N-terminal domain-containing protein
1473	 50.32	-1	1616527..1617303	+	258	19552744	-	NCgl1473	-	hypothetical protein
1474	 54.33	0	1617398..1617997	+	199	19552745	-	NCgl1474	-	hypothetical protein
1475	 55.35	0	1618318..1619616	-	432	19552746	-	NCgl1475	-	membrane protease subunit
1476	 54.08	0	1619669..1620097	-	142	19552747	-	NCgl1476	-	membrane protein
1477	 55.32	0	1620164..1621009	-	281	19552748	-	NCgl1477	-	hypothetical protein
1478	 57.76	0	1621056..1621841	+	261	19552749	-	NCgl1478	-	hypothetical protein
1479	 55.88	0	1621838..1622950	-	370	19552750	hemH	NCgl1479	-	ferrochelatase
1480	 58.13	0	1623024..1624838	-	604	19552751	-	NCgl1480	-	cell wall-associated hydrolase
1481	 49.50	-1	1625425..1625925	-	166	19552752	-	NCgl1481	-	hypothetical protein
1482	 58.26	+1	1626279..1629110	+	943	19552753	-	NCgl1482	-	aconitate hydratase
1483	 54.85	0	1629298..1629864	+	188	19552754	-	NCgl1483	-	transcriptional regulator
1484	 53.23	0	1629913..1630671	+	252	19552755	-	NCgl1484	-	glutamine amidotransferase
1485	 55.26	0	1630664..1631338	-	224	19552756	-	NCgl1485	-	nucleoside-diphosphate-sugar epimerase
1486	 47.78	-1	1631660..1631929	+	89	19552758	-	NCgl1486	-	hypothetical protein
1487	 53.64	0	1631939..1633327	+	462	19552759	-	NCgl1487	-	hypothetical protein
1488	 57.97	0	1633566..1636244	+	892	19552760	-	NCgl1488	-	cation transport ATPase
1489	 51.57	0	1636241..1636717	-	158	19552761	-	NCgl1489	-	hypothetical protein
1490	 46.74	-1	1637081..1638445	+	454	19552762	-	NCgl1490	-	hypothetical protein
1491	 48.15	-1	1639916..1640158	+	80	19552764	-	NCgl1491	-	hypothetical protein
1492	 55.02	0	1640567..1641004	+	145	19552766	-	NCgl1492	-	integrase
1493	 60.29	+1	1641043..1642674	-	543	19552767	-	NCgl1493	-	ABC-type transporter, duplicated ATPase component
1494	 51.05	0	1642740..1644218	-	492	19552768	-	NCgl1494	-	hypothetical protein
1495	 55.17	0	1644315..1645514	-	399	19552769	-	NCgl1495	-	hypothetical protein
1496	 59.35	+1	1645661..1646371	+	236	19552770	-	NCgl1496	-	transposase
1497	 51.70	0	1646549..1647136	+	195	19552771	-	NCgl1497	-	hypothetical protein
1498	 54.59	0	1647209..1647622	-	137	19552772	-	NCgl1498	-	putative aromatic ring hydroxylating enzyme
1499	 57.11	0	1647648..1648097	-	149	19552773	-	NCgl1499	-	NifU-like protein
1500	 54.82	0	1648097..1649362	-	421	19552774	-	NCgl1500	-	selenocysteine lyase
1501	 56.39	0	1649364..1650122	-	252	19552775	-	NCgl1501	-	ABC-type transporter, ATPase component
1502	 58.35	+1	1650246..1651424	-	392	19552776	-	NCgl1502	-	iron-regulated ABC-type transporter SufB
1503	 54.98	0	1651430..1652875	-	481	19552777	-	NCgl1503	-	iron-regulated ABC-type transporter SufB
1504	 50.51	0	1652891..1653577	-	228	19552778	-	NCgl1504	-	transcriptional regulator
1505	 56.83	0	1653998..1655674	+	558	19552779	-	NCgl1505	-	hypothetical protein
1506	 54.35	0	1655681..1656703	+	340	19552780	-	NCgl1506	-	ABC-type transporter, ATPase component
1507	 55.14	0	1656712..1657518	+	268	19552781	-	NCgl1507	-	ABC-type transporter, permease component
1508	 53.89	0	1657638..1658678	+	346	19552782	-	NCgl1508	-	cytochrome oxidase assembly protein
1509	 56.51	0	1658788..1661139	+	783	19552783	-	NCgl1509	-	putative helicase
1510	 56.84	0	1661569..1662555	+	328	19552784	-	NCgl1510	-	NADPH:quinone reductase
1511	 55.66	0	1662627..1663598	-	323	19552785	-	NCgl1511	-	protoheme IX farnesyltransferase
1512	 58.49	+1	1664403..1666505	+	700	19552786	-	NCgl1512	-	transketolase
1513	 58.17	+1	1666673..1667755	+	360	19552787	-	NCgl1513	-	transaldolase
1514	 55.28	0	1667860..1669404	+	514	19552788	-	NCgl1514	-	glucose-6-phosphate 1-dehydrogenase
1515	 56.04	0	1669419..1670378	+	319	19552789	-	NCgl1515	-	hypothetical protein
1516	 54.80	0	1670395..1671102	+	235	19552790	-	NCgl1516	-	6-phosphogluconolactonase
1517	 53.43	0	1671270..1671677	-	135	19552791	-	NCgl1517	-	hypothetical protein
1518	 60.20	+1	1671750..1673126	+	458	19552792	-	NCgl1518	-	hypothetical protein
1519	 55.16	0	1673263..1674105	-	280	19552793	-	NCgl1519	-	glycine/D-amino acid oxidase
1520	 58.83	+1	1674120..1675268	-	382	19552794	-	NCgl1520	-	ornithine cyclodeaminase
1521	 55.41	0	1675265..1676623	-	452	19552795	-	NCgl1521	-	ammonia permease
1522	 52.14	0	1677046..1677279	-	77	19552796	secG	NCgl1522	-	preprotein translocase subunit SecG
1523	 56.96	0	1677384..1680143	-	919	19552797	-	NCgl1523	-	phosphoenolpyruvate carboxylase
54.31	MEAN

3.83	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.