IslandPath Analysis: Corynebacterium glutamicum ATCC 13032



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 54.31   STD DEV: 3.83
Corynebacterium glutamicum ATCC 13032, complete genome - 1..3309401
2993 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1366	 53.26	0	1498776..1499648	+	290	19552637	-	NCgl1366	-	ATPase involved in chromosome partitioning
1367	 50.65	0	1499931..1500698	+	255	23308849	-	NCgl1367	-	hypothetical protein
1368	 56.21	0	1500908..1501471	-	187	19552639	-	NCgl1368	-	acetyltransferase
1369	 53.22	0	1501710..1502579	+	289	19552640	-	NCgl1369	-	rhodanese-related sulfurtransferase
1370	 52.50	0	1502601..1503179	+	192	19552641	-	NCgl1370	-	hypothetical protein
1371	 56.18	0	1503279..1504241	+	320	19552642	-	NCgl1371	-	16S rRNA uridine-516 pseudouridylate synthase
1372	 58.79	+1	1504238..1504948	+	236	19552643	cmk	NCgl1372	-	cytidylate kinase
1373	 54.96	0	1504945..1506576	+	543	19552644	engA	NCgl1373	-	GTP-binding protein EngA
1374	 52.17	0	1506659..1507327	-	222	19552645	-	NCgl1374	-	hypothetical protein
1375	 54.29	0	1507402..1507902	-	166	19552646	-	NCgl1375	-	hypothetical protein
1376	 53.80	0	1507914..1508729	-	271	19552647	-	NCgl1376	-	SAM-dependent methyltransferase
1377	 54.82	0	1509002..1510369	+	455	19552648	-	NCgl1377	-	ABC-type transport system, ATPase component
1378	 58.42	+1	1510390..1512135	+	581	19552649	-	NCgl1378	-	ABC-type transport system ATPase component
1379	 57.99	0	1512174..1512980	+	268	19552650	-	NCgl1379	-	zinc transporter ZupT
1380	 55.90	0	1512977..1514527	-	516	19552651	-	NCgl1380	-	NhaP-type Na+/H+ and K+/H+ antiporter
1381	 48.68	-1	1514971..1515159	-	62	19552652	-	NCgl1381	-	hypothetical protein
1382	 57.44	0	1515405..1515794	-	129	19552653	-	NCgl1382	-	hypothetical protein
1383	 55.23	0	1515796..1516932	-	378	19552654	-	NCgl1383	-	alpha/beta fold family hydrolase
1384	 57.94	0	1517170..1519461	+	763	19552655	-	NCgl1384	-	preprotein translocase subunit SecA
1385	 55.79	0	1519601..1520032	+	143	19552656	-	NCgl1385	-	FHA-domain-containing protein
1386	 54.41	0	1520190..1520948	+	252	19552657	-	NCgl1386	-	hypothetical protein
1387	 50.94	0	1520957..1521592	+	211	19552658	-	NCgl1387	-	hypothetical protein
1388	 55.90	0	1521771..1522346	+	191	19552659	-	NCgl1388	-	transcriptional regulator
1389	 53.80	0	1522429..1522941	-	170	19552660	-	NCgl1389	-	hypothetical protein
1390	 57.83	0	1523049..1524440	-	463	19552661	-	NCgl1390	-	hypothetical protein
1391	 55.82	0	1524565..1525458	-	297	19552662	-	NCgl1391	-	hypothetical protein
1392	 55.02	0	1525470..1526534	-	354	19552663	-	NCgl1392	-	CBS domain-containing protein
1393	 55.60	0	1526531..1527913	-	460	19552664	-	NCgl1393	-	CBS domain-containing protein
1394	 56.50	0	1527984..1529330	-	448	19552665	-	NCgl1394	-	putative helicase
1395	 56.91	0	1529486..1530223	+	245	19552666	-	NCgl1395	-	siderophore-interacting protein
1396	 59.18	+1	1530338..1531792	-	484	19552667	-	NCgl1396	-	6-phosphogluconate dehydrogenase
1397	 57.63	0	1531933..1532397	+	154	19552668	-	NCgl1397	-	hypothetical protein
1398	 54.87	0	1532415..1532999	+	194	19552669	-	NCgl1398	-	SAM-dependent methyltransferase
1399	 53.23	0	1533041..1533784	+	247	19552670	-	NCgl1399	-	ABC-type transporter, ATPase component
1400	 54.70	0	1533781..1534524	+	247	19552671	-	NCgl1400	-	ABC-type transporter, permease component
1401	 59.02	+1	1534526..1535401	-	291	19552672	-	NCgl1401	-	transcriptional regulator
1402	 57.24	0	1535379..1536227	-	282	19552673	-	NCgl1402	-	ABC-type transporter, permease component
1403	 54.28	0	1536224..1537030	-	268	19552674	-	NCgl1403	-	ABC-type transporter, permease component
1404	 55.39	0	1537027..1537833	-	268	19552675	-	NCgl1404	-	ABC-type transporter, ATPase component
1405	 53.18	0	1537867..1538919	-	350	19552676	-	NCgl1405	-	ABC-type transporter, periplasmic component
1406	 50.21	-1	1538960..1539664	-	234	19552677	-	NCgl1406	-	hypothetical protein
1407	 57.50	0	1539817..1542108	-	763	161486710	-	NCgl1407	-	multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase
1408	 58.36	+1	1542116..1542922	-	268	19552679	-	NCgl1408	-	hydroxyethylthiazole kinase
1409	 57.05	0	1543151..1544554	-	467	19552680	-	NCgl1409	-	NADH dehydrogenase, FAD-containing subunit
1410	 54.59	0	1544976..1546292	+	438	19552681	-	NCgl1410	-	cyclopropane fatty acid synthase
1411	 54.36	0	1546304..1547692	-	462	19552682	-	NCgl1411	-	major facilitator superfamily permease
1412	 50.94	0	1547964..1548440	-	158	19552683	-	NCgl1412	-	phosphoribosyltransferase
1413	 51.83	0	1548780..1549352	+	190	19552684	-	NCgl1413	-	hypothetical protein
1414	 49.55	-1	1549403..1550401	+	332	19552685	-	NCgl1414	-	arsenite efflux pump ACR3
1415	 53.29	0	1550469..1550954	+	161	19552686	-	NCgl1415	-	hypothetical protein
1416	 51.44	0	1551545..1552240	+	231	19552687	-	NCgl1416	-	hypothetical protein
1417	 56.73	0	1552587..1553975	+	462	19552688	-	NCgl1417	-	sulfate permease
1418	 55.02	0	1554067..1554684	-	205	19552689	-	NCgl1418	-	hypothetical protein
1419	 49.21	-1	1554888..1555076	-	62	19552690	-	NCgl1419	-	hypothetical protein
1420	 52.32	0	1555083..1555835	-	250	19552691	-	NCgl1420	-	hypothetical protein
1421	 52.12	0	1555835..1555999	-	54	19552692	-	NCgl1421	-	hypothetical protein
1422	 55.89	0	1556376..1556774	+	132	19552693	-	NCgl1422	-	hypothetical protein
1423	 58.92	+1	1557011..1557823	-	270	19552694	-	NCgl1423	-	glycosyltransferase
1424	 52.93	0	1557856..1559493	-	545	19552695	-	NCgl1424	-	apolipoprotein N-acyltransferase
1425	 52.60	0	1559494..1560069	-	191	19552696	fxsA	NCgl1425	-	FxsA
1426	 57.78	0	1560434..1561750	-	438	19552697	-	NCgl1426	-	hypothetical protein
1427	 55.34	0	1561780..1562556	+	258	19552698	-	NCgl1427	-	hypothetical protein
1428	 53.71	0	1562522..1563802	-	426	19552699	-	NCgl1428	-	precorrin-6B methylase 1
1429	 55.20	0	1564562..1565302	-	246	19552700	-	NCgl1429	-	hypothetical protein
1430	 54.39	0	1565299..1566438	-	379	19552701	-	NCgl1430	-	Xaa-Pro aminopeptidase
1431	 52.96	0	1566468..1567109	+	213	19552702	-	NCgl1431	-	hypothetical protein
1432	 54.59	0	1567114..1569903	-	929	19552703	-	NCgl1432	-	putative helicase
1433	 54.07	0	1569929..1570873	-	314	19552704	-	NCgl1433	-	Sec-independent protein secretion pathway component TatC
1434	 54.40	0	1571065..1571382	-	105	19552705	tatA	NCgl1434	-	twin argininte translocase protein A
1435	 50.41	-1	1571503..1572486	-	327	19552706	-	NCgl1435	-	transcriptional regulator
1436	 58.77	+1	1572489..1573463	-	324	19552707	-	NCgl1436	-	transcriptional regulator
1437	 51.94	0	1573488..1574927	-	479	19552708	-	NCgl1437	-	hypothetical protein
1438	 52.82	0	1574942..1575136	-	64	19552709	-	NCgl1438	-	hypothetical protein
1439	 54.63	0	1575403..1576947	-	514	19552710	-	NCgl1439	-	hypothetical protein
1440	 54.52	0	1576948..1578528	-	526	19552711	-	NCgl1440	-	ATPase of the AAA+ class
1441	 56.51	0	1578564..1579400	-	278	19552712	-	NCgl1441	-	SAM-dependent methyltransferase involved in tRNA-Met maturation
1442	 55.27	0	1579446..1580708	-	420	19552713	-	NCgl1442	-	putative aminopeptidase 2
1443	 54.12	0	1580807..1581643	+	278	19552714	-	NCgl1443	-	endonuclease
1444	 55.06	0	1581851..1582117	+	88	19552715	-	NCgl1444	-	plasmid maintenance system antidote protein
1445	 54.29	0	1582270..1583481	-	403	19552716	-	NCgl1445	-	major facilitator superfamily permease
1446	 53.38	0	1583910..1585490	-	526	19552717	aspA	NCgl1446	-	aspartate ammonia-lyase
1447	 57.21	0	1585600..1586445	-	281	19552718	hisG	NCgl1447	-	ATP phosphoribosyltransferase
1448	 51.89	0	1586462..1586725	-	87	19552719	hisE	NCgl1448	-	phosphoribosyl-ATP pyrophosphatase
1449	 58.62	+1	1586809..1587504	-	231	19552720	-	NCgl1449	-	phosphatase/phosphohexomutase
1450	 56.06	0	1587570..1591235	-	1221	19552721	-	NCgl1450	-	methionine synthase I cobalamin-binding subunit
1451	 52.53	0	1591343..1591915	+	190	19552722	-	NCgl1451	-	hypothetical protein
1452	 50.15	-1	1591938..1592966	-	342	23308851	-	NCgl1452	-	K+ transport flavoprotein
1453	 46.65	-1	1593337..1594515	+	392	23308852	-	NCgl1453	-	arsenite efflux pump ACR3
1454	 48.23	-1	1594532..1594954	+	140	23308853	-	NCgl1454	-	protein-tyrosine-phosphatase
1455	 45.95	-2	1595030..1595671	+	213	19552726	-	NCgl1455	-	protein-tyrosine-phosphatase
1456	 46.19	-2	1595841..1596221	-	126	19552727	-	NCgl1456	-	hypothetical protein
1457	 57.88	0	1596246..1597508	-	420	19552728	cysS	NCgl1457	-	cysteinyl-tRNA synthetase
1458	 54.99	0	1597742..1598623	-	293	19552729	uppP	NCgl1458	-	undecaprenyl pyrophosphate phosphatase
1459	 57.41	0	1598667..1599617	+	316	23308854	-	NCgl1459	-	oxidoreductase
1460	 56.79	0	1599679..1600680	+	333	23308855	-	NCgl1460	-	hypothetical protein
1461	 56.81	0	1600692..1601807	+	371	19552732	-	NCgl1461	-	dihydroorotate dehydrogenase 2
1462	 44.96	-2	1601928..1602185	-	85	19552733	-	NCgl1462	-	hypothetical protein
1463	 56.30	0	1602660..1603469	+	269	19552734	-	NCgl1463	-	hypothetical protein
1464	 55.73	0	1603472..1604632	+	386	19552735	-	NCgl1464	-	putative transposase
1465	 52.18	0	1604827..1605261	-	144	19552736	-	NCgl1465	-	hypothetical protein
54.31	MEAN

3.83	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.