IslandPath Analysis: Corynebacterium glutamicum ATCC 13032



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 54.31   STD DEV: 3.83
Corynebacterium glutamicum ATCC 13032, complete genome - 1..3309401
2993 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1284	 56.09	0	1402272..1402706	+	144	19552555	-	NCgl1284	-	hypothetical protein
1285	 44.87	-2	1403128..1403994	+	288	19552556	-	NCgl1285	-	hypothetical protein
1286	 39.19	-2	1403997..1404218	+	73	19552557	-	NCgl1286	-	hypothetical protein
1287	 53.33	0	1404691..1404885	-	64	23308843	-	NCgl1287	-	hypothetical protein
1288	 44.60	-2	1404867..1405301	-	144	19552558	-	NCgl1288	-	hypothetical protein
1289	 46.50	-2	1405317..1406174	-	285	19552559	-	NCgl1289	-	hypothetical protein
1290	 41.13	-2	1407164..1407535	-	123	19552560	-	NCgl1290	-	hypothetical protein
1291	 44.03	-2	1407556..1407873	-	105	23308844	-	NCgl1291	-	hypothetical protein
1292	 46.08	-2	1408250..1408453	+	67	19552561	-	NCgl1292	-	hypothetical protein
1293	 49.47	-1	1409425..1409802	-	125	19552562	-	NCgl1293	-	hypothetical protein
1294	 44.58	-2	1410061..1411011	-	316	19552563	-	NCgl1294	-	hypothetical protein
1295	 45.63	-2	1411116..1411424	-	102	19552564	-	NCgl1295	-	hypothetical protein
1296	 49.74	-1	1411434..1412000	-	188	19552565	-	NCgl1296	-	hypothetical protein
1297	 47.56	-1	1412351..1412575	+	74	23308845	-	NCgl1297	-	hypothetical protein
1298	 54.42	0	1412623..1412916	-	97	19552566	-	NCgl1298	-	hypothetical protein
1299	 55.43	0	1413820..1416462	+	880	19552567	-	NCgl1299	-	DNA polymerase I
1300	 55.53	0	1416459..1417859	-	466	19552568	-	NCgl1300	-	major facilitator superfamily permease
1301	 52.35	0	1417896..1418873	+	325	19552569	-	NCgl1301	-	transcriptional regulator
1302	 53.31	0	1418876..1419751	+	291	19552570	-	NCgl1302	-	aldo/keto reductase
1303	 56.28	0	1420068..1420847	-	259	19552571	-	NCgl1303	-	SAM-dependent methyltransferase
1304	 58.93	+1	1421099..1422559	+	486	19552573	rpsA	NCgl1304	-	30S ribosomal protein S1
1305	 52.19	0	1423217..1425268	+	683	19552574	-	NCgl1305	-	phosphotransferase system IIC component, glucose/maltose/N-acetylglucosamine-specific
1306	 52.40	0	1425279..1425881	+	200	19552575	-	NCgl1306	-	dephospho-CoA kinase
1307	 48.14	-1	1426257..1427357	+	366	23308846	-	NCgl1307	-	hypothetical protein
1308	 50.91	0	1427373..1427810	-	145	19552577	-	NCgl1308	-	hypothetical protein
1309	 56.44	0	1428221..1429159	-	312	19552579	-	NCgl1309	-	inosine-uridine nucleoside N-ribohydrolase
1310	 56.20	0	1429191..1430642	-	483	19552580	-	NCgl1310	-	major facilitator superfamily permease
1311	 57.03	0	1430656..1431579	-	307	19552581	-	NCgl1311	-	sugar kinase
1312	 49.86	-1	1431572..1432612	-	346	19552582	-	NCgl1312	-	transcriptional regulator
1313	 47.32	-1	1432750..1433550	+	266	19552583	-	NCgl1313	-	hypothetical protein
1314	 47.15	-1	1433600..1433932	+	110	19552584	-	NCgl1314	-	hypothetical protein
1315	 53.81	0	1434042..1436204	+	720	19552585	-	NCgl1315	-	excinuclease ABC subunit B
1316	 51.35	0	1436335..1436778	+	147	19552586	-	NCgl1316	-	universal stress protein UspA
1317	 51.56	0	1436866..1437249	-	127	19552587	-	NCgl1317	-	transcriptional regulator
1318	 55.05	0	1437344..1438204	+	286	19552588	-	NCgl1318	-	nucleoside-diphosphate-sugar epimerase
1319	 55.25	0	1438209..1440476	-	755	19552589	-	NCgl1319	-	hypothetical protein
1320	 53.33	0	1440672..1441586	-	304	19552590	-	NCgl1320	-	hypothetical protein
1321	 54.23	0	1441790..1442392	-	200	19552591	-	NCgl1321	-	hypothetical protein
1322	 54.56	0	1442487..1445336	+	949	19552593	uvrA	NCgl1322	-	excinuclease ABC subunit A
1323	 56.93	0	1445320..1447446	-	708	19552594	-	NCgl1323	-	hypothetical protein
1324	 53.16	0	1447792..1448361	+	189	19552595	infC	NCgl1324	-	translation initiation factor IF-3
1325	 60.00	+1	1448390..1448584	+	64	19552596	rpmI	NCgl1325	-	50S ribosomal protein L35
1326	 56.51	0	1448645..1449028	+	127	19552597	rplT	NCgl1326	-	50S ribosomal protein L20
1327	 48.59	-1	1449116..1449928	-	270	19552598	-	NCgl1327	-	hypothetical protein
1328	 45.06	-2	1450210..1450695	+	161	19552599	-	NCgl1328	-	hypothetical protein
1329	 49.56	-1	1450918..1451823	+	301	23308847	-	NCgl1329	-	ABC-type transporter, permease component
1330	 48.75	-1	1451820..1452656	+	278	19552601	-	NCgl1330	-	ABC-type transporter, permease component
1331	 56.26	0	1452758..1454074	+	438	19552602	-	NCgl1331	-	ABC-type transporter, periplasmic component
1332	 55.50	0	1454115..1455341	+	408	19552603	-	NCgl1332	-	ABC-type transporter, ATPase component
1333	 56.07	0	1455347..1456054	-	235	19552604	-	NCgl1333	-	glycerophosphoryl diester phosphodiesterase
1334	 58.12	0	1456355..1456951	+	198	23308848	-	NCgl1334	-	rRNA methylase
1335	 57.32	0	1457032..1458069	+	345	19552606	pheS	NCgl1335	-	phenylalanyl-tRNA synthetase subunit alpha
1336	 58.93	+1	1458112..1460619	+	835	19552607	pheT	NCgl1336	-	phenylalanyl-tRNA synthetase subunit beta
1337	 53.85	0	1461157..1462131	+	324	19552608	-	NCgl1337	-	hypothetical protein
1338	 51.30	0	1462134..1463519	+	461	19552609	-	NCgl1338	-	acyltransferase
1339	 60.74	+1	1463533..1463937	+	134	19552610	-	NCgl1339	-	hypothetical protein
1340	 52.89	0	1464053..1465126	+	357	19552611	argC	NCgl1340	-	N-acetyl-gamma-glutamyl-phosphate reductase
1341	 53.30	0	1465210..1466376	+	388	19552612	argJ	NCgl1341	-	bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein
1342	 53.67	0	1466422..1467375	+	317	19552613	-	NCgl1342	-	acetylglutamate kinase
1343	 57.65	0	1467376..1468551	+	391	19552614	argD	NCgl1343	-	acetylornithine aminotransferase
1344	 56.56	0	1468565..1469524	+	319	19552615	-	NCgl1344	-	ornithine carbamoyltransferase
1345	 56.69	0	1469573..1470043	+	156	19552616	-	NCgl1345	-	arginine repressor
1346	 56.80	0	1470211..1471416	+	401	19552617	-	NCgl1346	-	argininosuccinate synthase
1347	 59.34	+1	1471477..1472910	+	477	19552618	-	NCgl1347	-	argininosuccinate lyase
1348	 53.93	0	1472977..1474122	+	381	19552619	-	NCgl1348	-	hypothetical protein
1349	 57.86	0	1474119..1475696	+	525	19552620	-	NCgl1349	-	hypothetical protein
1350	 51.71	0	1475683..1476297	+	204	19552621	-	NCgl1350	-	hypothetical protein
1351	 55.00	0	1476343..1476522	+	59	19552622	-	NCgl1351	-	hypothetical protein
1352	 57.64	0	1476550..1477812	+	420	19552623	-	NCgl1352	-	tyrosyl-tRNA synthetase
1353	 53.63	0	1477926..1478393	-	155	19552624	-	NCgl1353	-	universal stress protein UspA
1354	 57.55	0	1484726..1486030	+	434	19552625	-	NCgl1354	-	TPR repeat-containing protein
1355	 57.35	0	1486042..1487028	+	328	19552626	-	NCgl1355	-	HAD family sugar phosphatase
1356	 50.91	0	1487032..1487196	+	54	19552627	-	NCgl1356	-	hypothetical protein
1357	 55.60	0	1487238..1488059	+	273	19552628	-	NCgl1357	-	rRNA methylase
1358	 54.93	0	1488059..1489021	+	320	19552629	ppnK	NCgl1358	-	inorganic polyphosphate/ATP-NAD kinase
1359	 57.97	0	1489103..1490884	+	593	19552630	-	NCgl1359	-	ATPase involved in DNA repair
1360	 56.62	0	1490944..1492137	+	397	19552631	-	NCgl1360	-	hypothetical protein
1361	 55.28	0	1492147..1493112	+	321	19552632	-	NCgl1361	-	hypothetical protein
1362	 54.59	0	1493513..1495177	+	554	19552633	-	NCgl1362	-	CTP synthetase
1363	 55.21	0	1495193..1495864	+	223	19552634	-	NCgl1363	-	NTP pyrophosphohydrolase
1364	 56.50	0	1495861..1496775	+	304	19552635	xerD	NCgl1364	-	site-specific tyrosine recombinase XerD
1365	 51.27	0	1496792..1498324	-	510	19552636	-	NCgl1365	-	ABC-type transporter, duplicated ATPase component
1366	 53.26	0	1498776..1499648	+	290	19552637	-	NCgl1366	-	ATPase involved in chromosome partitioning
1367	 50.65	0	1499931..1500698	+	255	23308849	-	NCgl1367	-	hypothetical protein
1368	 56.21	0	1500908..1501471	-	187	19552639	-	NCgl1368	-	acetyltransferase
1369	 53.22	0	1501710..1502579	+	289	19552640	-	NCgl1369	-	rhodanese-related sulfurtransferase
1370	 52.50	0	1502601..1503179	+	192	19552641	-	NCgl1370	-	hypothetical protein
1371	 56.18	0	1503279..1504241	+	320	19552642	-	NCgl1371	-	16S rRNA uridine-516 pseudouridylate synthase
1372	 58.79	+1	1504238..1504948	+	236	19552643	cmk	NCgl1372	-	cytidylate kinase
1373	 54.96	0	1504945..1506576	+	543	19552644	engA	NCgl1373	-	GTP-binding protein EngA
1374	 52.17	0	1506659..1507327	-	222	19552645	-	NCgl1374	-	hypothetical protein
1375	 54.29	0	1507402..1507902	-	166	19552646	-	NCgl1375	-	hypothetical protein
1376	 53.80	0	1507914..1508729	-	271	19552647	-	NCgl1376	-	SAM-dependent methyltransferase
1377	 54.82	0	1509002..1510369	+	455	19552648	-	NCgl1377	-	ABC-type transport system, ATPase component
1378	 58.42	+1	1510390..1512135	+	581	19552649	-	NCgl1378	-	ABC-type transport system ATPase component
1379	 57.99	0	1512174..1512980	+	268	19552650	-	NCgl1379	-	zinc transporter ZupT
1380	 55.90	0	1512977..1514527	-	516	19552651	-	NCgl1380	-	NhaP-type Na+/H+ and K+/H+ antiporter
1381	 48.68	-1	1514971..1515159	-	62	19552652	-	NCgl1381	-	hypothetical protein
1382	 57.44	0	1515405..1515794	-	129	19552653	-	NCgl1382	-	hypothetical protein
1383	 55.23	0	1515796..1516932	-	378	19552654	-	NCgl1383	-	alpha/beta fold family hydrolase
54.31	MEAN

3.83	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.