IslandPathversion 1.0

IslandPath Analysis: Corynebacterium glutamicum ATCC 13032



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 54.31 STD DEV: 3.83
Corynebacterium glutamicum ATCC 13032, complete genome - 1..3309401
2993 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1246	 58.86	+1	1363139..1363612	-	157	19552515	-	NCgl1246	-	hypothetical protein
1247	 54.29	0	1363729..1364253	-	174	19552516	-	NCgl1247	-	hypothetical protein
1248	 56.67	0	1364337..1364786	-	149	19552517	-	NCgl1248	-	transcriptional regulator
1249	 56.21	0	1364875..1365180	-	101	19552518	-	NCgl1249	-	hypothetical protein
1250	 51.37	0	1365214..1365396	-	60	19552519	-	NCgl1250	-	hypothetical protein
1251	 43.12	-2	1368400..1369554	+	384	19552523	-	NCgl1251	-	hypothetical protein
1252	 51.68	0	1369551..1369877	+	108	19552524	-	NCgl1252	-	hypothetical protein
1253	 56.46	0	1369874..1371637	-	587	19552525	-	NCgl1253	-	thiamine biosynthesis protein ThiC
1254	 47.58	-1	1372805..1373134	+	109	19552526	-	NCgl1254	-	hypothetical protein
1255	 56.20	0	1373347..1375734	-	795	19552527	-	NCgl1255	-	glucan phosphorylase
1256	 54.72	0	1375930..1376088	-	52	19552528	-	NCgl1256	-	hypothetical protein
1257	 53.83	0	1376146..1377555	-	469	19552529	-	NCgl1257	-	Zn-dependent hydrolase
1258	 49.40	-1	1377663..1378415	-	250	23308838	-	NCgl1258	-	hypothetical protein
1259	 50.00	-1	1378463..1378942	-	159	19552531	-	NCgl1259	-	hypothetical protein
1260	 51.15	0	1379003..1379569	+	188	23308839	-	NCgl1260	-	guanosine polyphosphate pyrophosphohydrolase/synthetase
1261	 61.44	+1	1379552..1380259	-	235	19552533	-	NCgl1261	-	transcriptional regulator
1262	 59.41	+1	1380440..1381885	+	481	19552534	-	NCgl1262	-	isopropylmalate isomerase large subunit
1263	 57.91	0	1381902..1382495	+	197	19552535	leuD	NCgl1263	-	isopropylmalate isomerase small subunit
1264	 56.57	0	1382842..1383921	-	359	19552536	-	NCgl1264	-	NTP pyrophosphohydrolase
1265	 52.20	0	1383930..1384088	+	52	19552537	-	NCgl1265	-	hypothetical protein
1266	 56.86	0	1384130..1385128	+	332	19552538	gpsA	NCgl1266	-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
1267	 54.11	0	1385153..1386235	+	360	19552539	ddl	NCgl1267	-	D-alanyl-alanine synthetase A
1268	 61.77	+1	1386290..1387270	-	326	19552540	-	NCgl1268	-	hypothetical protein
1269	 56.87	0	1387338..1388327	+	329	19552541	-	NCgl1269	-	thiamine monophosphate kinase
1270	 54.67	0	1388327..1389076	+	249	19552542	-	NCgl1270	-	uracil-DNA glycosylase
1271	 57.26	0	1389208..1390791	+	527	23308840	-	NCgl1271	-	kinase
1272	 57.44	0	1390796..1392919	+	707	19552544	-	NCgl1272	-	RecG-like helicase
1273	 50.46	-1	1392939..1393154	+	71	19552545	-	NCgl1273	-	pyruvate carboxylase C-terminal domain-containing protein
1274	 59.32	+1	1393154..1393738	+	194	19552546	-	NCgl1274	-	N6-adenine-specific methylase
1275	 56.73	0	1393742..1394224	+	160	19552547	coaD	NCgl1275	-	phosphopantetheine adenylyltransferase
1276	 57.52	0	1394797..1395561	-	254	19552548	-	NCgl1276	-	ABC-type transporter, ATPase component
1277	 55.94	0	1395565..1396515	-	316	19552549	-	NCgl1277	-	ABC-type transporter, permease component
1278	 55.92	0	1396558..1397562	-	334	19552550	-	NCgl1278	-	ABC-type transporter, periplasmic component
1279	 51.60	0	1397662..1398471	+	269	19552551	-	NCgl1279	-	hypothetical protein
1280	 51.99	0	1398554..1399534	-	326	19552552	-	NCgl1280	-	hypothetical protein
1281	 47.43	-1	1400182..1400940	-	252	23308841	-	NCgl1281	-	integrase
1282	 42.58	-2	1400926..1401336	+	136	23308842	-	NCgl1282	-	hypothetical protein
1283	 44.98	-2	1401333..1402079	+	248	19552554	-	NCgl1283	-	hypothetical protein
1284	 56.09	0	1402272..1402706	+	144	19552555	-	NCgl1284	-	hypothetical protein
1285	 44.87	-2	1403128..1403994	+	288	19552556	-	NCgl1285	-	hypothetical protein
1286	 39.19	-2	1403997..1404218	+	73	19552557	-	NCgl1286	-	hypothetical protein
1287	 53.33	0	1404691..1404885	-	64	23308843	-	NCgl1287	-	hypothetical protein
1288	 44.60	-2	1404867..1405301	-	144	19552558	-	NCgl1288	-	hypothetical protein
1289	 46.50	-2	1405317..1406174	-	285	19552559	-	NCgl1289	-	hypothetical protein
1290	 41.13	-2	1407164..1407535	-	123	19552560	-	NCgl1290	-	hypothetical protein
1291	 44.03	-2	1407556..1407873	-	105	23308844	-	NCgl1291	-	hypothetical protein
1292	 46.08	-2	1408250..1408453	+	67	19552561	-	NCgl1292	-	hypothetical protein
1293	 49.47	-1	1409425..1409802	-	125	19552562	-	NCgl1293	-	hypothetical protein
1294	 44.58	-2	1410061..1411011	-	316	19552563	-	NCgl1294	-	hypothetical protein
1295	 45.63	-2	1411116..1411424	-	102	19552564	-	NCgl1295	-	hypothetical protein
1296	 49.74	-1	1411434..1412000	-	188	19552565	-	NCgl1296	-	hypothetical protein
1297	 47.56	-1	1412351..1412575	+	74	23308845	-	NCgl1297	-	hypothetical protein
1298	 54.42	0	1412623..1412916	-	97	19552566	-	NCgl1298	-	hypothetical protein
1299	 55.43	0	1413820..1416462	+	880	19552567	-	NCgl1299	-	DNA polymerase I
1300	 55.53	0	1416459..1417859	-	466	19552568	-	NCgl1300	-	major facilitator superfamily permease
1301	 52.35	0	1417896..1418873	+	325	19552569	-	NCgl1301	-	transcriptional regulator
1302	 53.31	0	1418876..1419751	+	291	19552570	-	NCgl1302	-	aldo/keto reductase
1303	 56.28	0	1420068..1420847	-	259	19552571	-	NCgl1303	-	SAM-dependent methyltransferase
1304	 58.93	+1	1421099..1422559	+	486	19552573	rpsA	NCgl1304	-	30S ribosomal protein S1
1305	 52.19	0	1423217..1425268	+	683	19552574	-	NCgl1305	-	phosphotransferase system IIC component, glucose/maltose/N-acetylglucosamine-specific
1306	 52.40	0	1425279..1425881	+	200	19552575	-	NCgl1306	-	dephospho-CoA kinase
1307	 48.14	-1	1426257..1427357	+	366	23308846	-	NCgl1307	-	hypothetical protein
1308	 50.91	0	1427373..1427810	-	145	19552577	-	NCgl1308	-	hypothetical protein
1309	 56.44	0	1428221..1429159	-	312	19552579	-	NCgl1309	-	inosine-uridine nucleoside N-ribohydrolase
1310	 56.20	0	1429191..1430642	-	483	19552580	-	NCgl1310	-	major facilitator superfamily permease
1311	 57.03	0	1430656..1431579	-	307	19552581	-	NCgl1311	-	sugar kinase
1312	 49.86	-1	1431572..1432612	-	346	19552582	-	NCgl1312	-	transcriptional regulator
1313	 47.32	-1	1432750..1433550	+	266	19552583	-	NCgl1313	-	hypothetical protein
1314	 47.15	-1	1433600..1433932	+	110	19552584	-	NCgl1314	-	hypothetical protein
1315	 53.81	0	1434042..1436204	+	720	19552585	-	NCgl1315	-	excinuclease ABC subunit B
1316	 51.35	0	1436335..1436778	+	147	19552586	-	NCgl1316	-	universal stress protein UspA
1317	 51.56	0	1436866..1437249	-	127	19552587	-	NCgl1317	-	transcriptional regulator
1318	 55.05	0	1437344..1438204	+	286	19552588	-	NCgl1318	-	nucleoside-diphosphate-sugar epimerase
1319	 55.25	0	1438209..1440476	-	755	19552589	-	NCgl1319	-	hypothetical protein
1320	 53.33	0	1440672..1441586	-	304	19552590	-	NCgl1320	-	hypothetical protein
1321	 54.23	0	1441790..1442392	-	200	19552591	-	NCgl1321	-	hypothetical protein
1322	 54.56	0	1442487..1445336	+	949	19552593	uvrA	NCgl1322	-	excinuclease ABC subunit A
1323	 56.93	0	1445320..1447446	-	708	19552594	-	NCgl1323	-	hypothetical protein
1324	 53.16	0	1447792..1448361	+	189	19552595	infC	NCgl1324	-	translation initiation factor IF-3
1325	 60.00	+1	1448390..1448584	+	64	19552596	rpmI	NCgl1325	-	50S ribosomal protein L35
1326	 56.51	0	1448645..1449028	+	127	19552597	rplT	NCgl1326	-	50S ribosomal protein L20
1327	 48.59	-1	1449116..1449928	-	270	19552598	-	NCgl1327	-	hypothetical protein
1328	 45.06	-2	1450210..1450695	+	161	19552599	-	NCgl1328	-	hypothetical protein
1329	 49.56	-1	1450918..1451823	+	301	23308847	-	NCgl1329	-	ABC-type transporter, permease component
1330	 48.75	-1	1451820..1452656	+	278	19552601	-	NCgl1330	-	ABC-type transporter, permease component
1331	 56.26	0	1452758..1454074	+	438	19552602	-	NCgl1331	-	ABC-type transporter, periplasmic component
1332	 55.50	0	1454115..1455341	+	408	19552603	-	NCgl1332	-	ABC-type transporter, ATPase component
1333	 56.07	0	1455347..1456054	-	235	19552604	-	NCgl1333	-	glycerophosphoryl diester phosphodiesterase
1334	 58.12	0	1456355..1456951	+	198	23308848	-	NCgl1334	-	rRNA methylase
1335	 57.32	0	1457032..1458069	+	345	19552606	pheS	NCgl1335	-	phenylalanyl-tRNA synthetase subunit alpha
1336	 58.93	+1	1458112..1460619	+	835	19552607	pheT	NCgl1336	-	phenylalanyl-tRNA synthetase subunit beta
1337	 53.85	0	1461157..1462131	+	324	19552608	-	NCgl1337	-	hypothetical protein
1338	 51.30	0	1462134..1463519	+	461	19552609	-	NCgl1338	-	acyltransferase
1339	 60.74	+1	1463533..1463937	+	134	19552610	-	NCgl1339	-	hypothetical protein
1340	 52.89	0	1464053..1465126	+	357	19552611	argC	NCgl1340	-	N-acetyl-gamma-glutamyl-phosphate reductase
1341	 53.30	0	1465210..1466376	+	388	19552612	argJ	NCgl1341	-	bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein
1342	 53.67	0	1466422..1467375	+	317	19552613	-	NCgl1342	-	acetylglutamate kinase
1343	 57.65	0	1467376..1468551	+	391	19552614	argD	NCgl1343	-	acetylornithine aminotransferase
1344	 56.56	0	1468565..1469524	+	319	19552615	-	NCgl1344	-	ornithine carbamoyltransferase
1345	 56.69	0	1469573..1470043	+	156	19552616	-	NCgl1345	-	arginine repressor
54.31	MEAN

3.83	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.